Wall clock time and date at job start Tue Mar 31 2020 15:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47267 * 2 1 4 4 C 1.50705 * 109.47166 * 240.00223 * 2 1 3 5 5 H 1.07998 * 120.00339 * 240.00647 * 4 2 1 6 6 C 1.37880 * 119.99534 * 59.99858 * 4 2 1 7 7 N 1.31510 * 120.00316 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99558 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47557 * 60.00420 * 8 6 4 10 10 H 1.48508 * 109.47066 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47320 * 299.99832 * 8 6 4 12 12 C 1.52996 * 109.47346 * 120.00559 * 2 1 3 13 13 S 1.81401 * 109.46939 * 299.99657 * 12 2 1 14 14 O 1.42100 * 110.54450 * 68.37497 * 13 12 2 15 15 O 1.42106 * 110.54438 * 291.62483 * 13 12 2 16 16 N 1.65600 * 104.45109 * 179.97438 * 13 12 2 17 17 C 1.47431 * 125.64810 * 269.96032 * 16 13 12 18 18 C 1.55392 * 104.87127 * 204.16730 * 17 16 13 19 19 C 1.55157 * 101.36576 * 323.01456 * 18 17 16 20 20 C 1.47019 * 125.65047 * 89.99960 * 16 13 12 21 21 H 1.09004 * 109.88394 * 298.32333 * 20 16 13 22 22 C 1.50704 * 110.01260 * 59.41546 * 20 16 13 23 23 C 1.34505 * 125.79015 * 219.34422 * 22 20 16 24 24 C 1.41390 * 106.84004 * 179.97438 * 23 22 20 25 25 C 1.34513 * 106.84044 * 359.97438 * 24 23 22 26 26 O 1.34305 * 108.41977 * 359.74231 * 25 24 23 27 27 H 1.09000 * 109.46927 * 299.99863 * 1 2 3 28 28 H 1.09002 * 109.47337 * 59.99482 * 1 2 3 29 29 H 1.08996 * 109.47207 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.46758 * 179.97438 * 3 2 1 31 31 H 1.08991 * 109.47427 * 299.99983 * 3 2 1 32 32 H 1.09004 * 109.47139 * 60.00688 * 3 2 1 33 33 H 0.96999 * 120.00348 * 180.02562 * 7 6 4 34 34 H 1.08996 * 109.47363 * 179.97438 * 12 2 1 35 35 H 1.09003 * 109.47526 * 59.99300 * 12 2 1 36 36 H 1.08999 * 110.36190 * 322.99782 * 17 16 13 37 37 H 1.08998 * 110.36491 * 85.21461 * 17 16 13 38 38 H 1.09004 * 111.18705 * 204.97719 * 18 17 16 39 39 H 1.09001 * 111.02055 * 80.98222 * 18 17 16 40 40 H 1.09002 * 110.72219 * 277.04408 * 19 18 17 41 41 H 1.09003 * 110.71618 * 153.95021 * 19 18 17 42 42 H 1.08003 * 126.58318 * 0.03102 * 23 22 20 43 43 H 1.08000 * 126.58137 * 179.97438 * 24 23 22 44 44 H 1.07996 * 125.78887 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1201 -4.0080 9 1 1.8257 -2.5200 -4.0079 10 1 1.8268 -0.4196 -5.2205 11 1 3.8063 -1.1207 -4.0083 12 6 2.0400 -0.7213 1.2491 13 16 1.4354 0.1337 2.7303 14 8 0.0281 -0.0184 2.8544 15 8 2.0481 1.4099 2.8544 16 7 2.0531 -0.7410 3.9935 17 6 1.3947 -1.8857 4.6492 18 6 2.0140 -1.9398 6.0733 19 6 3.4849 -1.5409 5.7825 20 6 3.3484 -0.5043 4.6474 21 1 4.1564 -0.6344 3.9275 22 6 3.3907 0.8896 5.2186 23 6 4.4532 1.7142 5.2031 24 6 4.0527 2.9105 5.8414 25 6 2.7691 2.7456 6.2083 26 8 2.3715 1.5219 5.8231 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8899 32 1 1.6768 1.9563 0.8901 33 1 0.7088 1.1616 -3.4843 34 1 3.1300 -0.7217 1.2489 35 1 1.6766 -1.7490 1.2492 36 1 0.3190 -1.7207 4.7098 37 1 1.6067 -2.8069 4.1066 38 1 1.9569 -2.9455 6.4898 39 1 1.5367 -1.2170 6.7350 40 1 4.0600 -2.4047 5.4488 41 1 3.9437 -1.0907 6.6629 42 1 5.4255 1.5033 4.7828 43 1 4.6606 3.7884 6.0034 44 1 2.1603 3.4750 6.7218 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332351499.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:51 Heat of formation + Delta-G solvation = -70.212517 kcal Electronic energy + Delta-G solvation = -27736.431732 eV Core-core repulsion = 23975.163564 eV Total energy + Delta-G solvation = -3761.268168 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.38934 -39.42701 -38.15595 -38.13577 -36.88062 -33.87985 -33.65277 -31.96220 -31.84241 -28.42135 -28.26731 -27.73933 -27.26966 -23.81569 -22.71217 -22.39417 -21.43580 -21.24670 -19.85215 -18.94337 -18.25296 -17.88707 -17.08030 -16.99328 -16.75856 -16.69526 -16.21922 -15.30989 -15.05510 -14.97251 -14.68582 -14.53352 -14.45934 -13.97494 -13.85000 -13.62956 -13.51729 -13.32323 -13.17396 -13.05478 -12.86944 -12.82594 -12.67322 -12.55646 -12.27279 -12.22288 -12.15052 -12.00181 -11.98597 -11.68182 -11.60404 -11.40540 -10.71882 -10.68738 -10.43006 -10.09665 -9.24549 -8.04268 -6.23677 -0.70900 0.90456 1.45300 1.45515 1.53084 1.70171 1.87055 2.23579 2.43654 2.91752 3.10675 3.18643 3.55389 3.72158 3.77801 3.98443 4.08132 4.18411 4.25357 4.29203 4.34055 4.55121 4.59762 4.75657 4.81513 4.81857 4.87367 4.92171 4.94434 4.98668 5.01741 5.04920 5.11046 5.16857 5.25206 5.33563 5.34402 5.44782 5.50934 5.61957 5.73392 5.92281 6.07538 6.31006 6.32712 6.80711 7.44795 8.95675 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.004129 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.546037 B = 6780.078007 C = 7208.796083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.070 3.930 3 C -0.157 4.157 4 C -0.519 4.519 5 H 0.065 0.935 6 C 0.017 3.983 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.288 1.288 11 H -0.271 1.271 12 C -0.584 4.584 13 S 2.619 3.381 14 O -0.992 6.992 15 O -0.974 6.974 16 N -1.012 6.012 17 C 0.098 3.902 18 C -0.120 4.120 19 C -0.111 4.111 20 C 0.217 3.783 21 H 0.120 0.880 22 C -0.030 4.030 23 C -0.215 4.215 24 C -0.222 4.222 25 C -0.060 4.060 26 O -0.190 6.190 27 H 0.027 0.973 28 H 0.072 0.928 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.070 0.930 32 H 0.029 0.971 33 H 0.262 0.738 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.067 0.933 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.163 0.837 43 H 0.166 0.834 44 H 0.225 0.775 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.379 -5.546 19.129 21.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.068 3.932 3 C -0.215 4.215 4 C -0.558 4.558 5 H 0.083 0.917 6 C -0.182 4.182 7 N -0.548 5.548 8 Si 0.782 3.218 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.196 1.196 12 C -0.716 4.716 13 S 2.719 3.281 14 O -0.982 6.982 15 O -0.964 6.964 16 N -0.850 5.850 17 C -0.026 4.026 18 C -0.159 4.159 19 C -0.150 4.150 20 C 0.111 3.889 21 H 0.137 0.863 22 C -0.081 4.081 23 C -0.235 4.235 24 C -0.241 4.241 25 C -0.127 4.127 26 O -0.086 6.086 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.048 0.952 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.086 0.914 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.135 0.865 41 H 0.110 0.890 42 H 0.181 0.819 43 H 0.184 0.816 44 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 6.403 -4.741 19.068 20.665 hybrid contribution 0.402 -0.040 -1.540 1.592 sum 6.805 -4.781 17.527 19.401 Atomic orbital electron populations 1.22201 0.97919 1.00430 1.01136 1.17917 0.92203 0.92161 0.90913 1.22177 0.99751 0.98376 1.01150 1.21250 1.31854 1.12385 0.90270 0.91722 1.25709 0.95103 0.95628 1.01776 1.69941 1.37132 1.23716 1.23983 0.85639 0.78793 0.78743 0.78618 1.19548 1.21317 1.19568 1.30507 1.12443 1.13319 1.15374 1.04658 0.73705 0.74536 0.75172 1.93477 1.31422 1.87019 1.86286 1.93526 1.78127 1.38984 1.85786 1.58727 1.30159 1.47893 1.48205 1.22501 0.97441 0.88018 0.94616 1.22861 0.94684 1.03855 0.94462 1.22780 0.98045 0.97727 0.96420 1.20297 0.85891 0.87139 0.95548 0.86251 1.23099 0.86601 0.97229 1.01215 1.21822 1.00968 0.94293 1.06394 1.22098 0.96664 1.00527 1.04783 1.24646 0.97149 0.86370 1.04514 1.83966 1.39072 1.26449 1.59104 0.95380 0.90963 0.94083 0.94133 0.91094 0.95216 0.92880 0.84561 0.84672 0.91416 0.88598 0.86318 0.91932 0.86506 0.89020 0.81941 0.81605 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -8.16 7.77 71.98 0.56 -7.60 16 2 C 0.07 3.46 0.52 -52.93 -0.03 3.44 16 3 C -0.16 -8.01 7.78 71.98 0.56 -7.45 16 4 C -0.52 -27.19 8.01 25.60 0.21 -26.99 16 5 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 6 C 0.02 0.92 5.15 84.66 0.44 1.36 16 7 N -0.91 -50.93 9.35 21.45 0.20 -50.73 16 8 Si 0.96 42.09 29.54 68.60 2.03 44.12 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 10 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 12 C -0.58 -22.78 5.12 71.98 0.37 -22.42 16 13 S 2.62 101.94 4.67 -56.49 -0.26 101.68 16 14 O -0.99 -44.28 14.90 -127.65 -1.90 -46.19 16 15 O -0.97 -42.80 13.63 -127.47 -1.74 -44.54 16 16 N -1.01 -28.77 3.33 -487.21 -1.62 -30.39 16 17 C 0.10 2.13 7.09 87.02 0.62 2.75 16 18 C -0.12 -1.84 7.12 32.16 0.23 -1.61 16 19 C -0.11 -1.60 6.47 31.78 0.21 -1.39 16 20 C 0.22 5.06 3.54 44.60 0.16 5.22 16 21 H 0.12 2.32 8.14 -2.38 -0.02 2.30 16 22 C -0.03 -0.85 4.21 24.83 0.10 -0.75 16 23 C -0.22 -5.75 10.80 22.19 0.24 -5.51 16 24 C -0.22 -5.64 10.91 22.19 0.24 -5.40 16 25 C -0.06 -1.58 12.09 66.97 0.81 -0.77 16 26 O -0.19 -6.02 10.59 -2.55 -0.03 -6.05 16 27 H 0.03 1.39 5.46 -2.39 -0.01 1.38 16 28 H 0.07 4.02 6.07 -2.39 -0.01 4.00 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 31 H 0.07 3.94 6.07 -2.39 -0.01 3.93 16 32 H 0.03 1.46 5.46 -2.38 -0.01 1.45 16 33 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 34 H 0.14 4.70 8.14 -2.39 -0.02 4.68 16 35 H 0.14 4.69 8.14 -2.39 -0.02 4.67 16 36 H 0.07 1.69 7.66 -2.39 -0.02 1.67 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.09 1.22 7.82 -2.39 -0.02 1.20 16 42 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 43 H 0.17 3.26 8.06 -2.91 -0.02 3.23 16 44 H 0.23 4.10 8.06 -2.91 -0.02 4.07 16 Total: -1.00 -74.00 355.96 2.37 -71.63 By element: Atomic # 1 Polarization: 26.58 SS G_CDS: 0.99 Total: 27.57 kcal Atomic # 6 Polarization: -71.81 SS G_CDS: 4.71 Total: -67.11 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -1.42 Total: -81.12 kcal Atomic # 8 Polarization: -93.10 SS G_CDS: -3.67 Total: -96.77 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Atomic # 16 Polarization: 101.94 SS G_CDS: -0.26 Total: 101.68 kcal Total: -74.00 2.37 -71.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332351499.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.419 kcal (2) G-P(sol) polarization free energy of solvation -74.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds