Wall clock time and date at job start Tue Mar 31 2020 15:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 13 13 S 1.81399 * 109.47147 * 59.99923 * 12 2 1 14 14 O 1.42106 * 110.54352 * 291.62304 * 13 12 2 15 15 O 1.42104 * 110.53977 * 68.37293 * 13 12 2 16 16 N 1.65593 * 104.45079 * 179.97438 * 13 12 2 17 17 C 1.47433 * 125.64981 * 269.69305 * 16 13 12 18 18 C 1.55122 * 104.72201 * 155.81625 * 17 16 13 19 19 C 1.55157 * 101.48998 * 37.29655 * 18 17 16 20 20 C 1.47022 * 125.65065 * 89.99666 * 16 13 12 21 21 H 1.09005 * 109.88125 * 61.60687 * 20 16 13 22 22 C 1.50693 * 109.88358 * 300.59973 * 20 16 13 23 23 C 1.34513 * 125.79221 * 139.99824 * 22 20 16 24 24 C 1.41386 * 106.84390 * 179.97438 * 23 22 20 25 25 C 1.34509 * 106.83709 * 359.97438 * 24 23 22 26 26 O 1.34301 * 108.42215 * 359.73640 * 25 24 23 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47261 * 299.99863 * 12 2 1 36 36 H 1.08998 * 110.36489 * 274.74750 * 17 16 13 37 37 H 1.09000 * 110.36282 * 37.06797 * 17 16 13 38 38 H 1.09003 * 111.19635 * 279.18765 * 18 17 16 39 39 H 1.09005 * 110.90637 * 155.27534 * 18 17 16 40 40 H 1.09001 * 110.72011 * 205.96636 * 19 18 17 41 41 H 1.09003 * 110.71936 * 82.69354 * 19 18 17 42 42 H 1.08004 * 126.57733 * 0.03830 * 23 22 20 43 43 H 1.07995 * 126.57660 * 179.97438 * 24 23 22 44 44 H 1.08004 * 125.78542 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0279 -0.0184 -2.8544 15 8 2.0480 1.4100 -2.8543 16 7 2.0541 -0.7400 -3.9935 17 6 3.3503 -0.4974 -4.6529 18 6 3.7366 -1.8637 -5.2775 19 6 2.3549 -2.3905 -5.7474 20 6 1.3991 -1.8824 -4.6474 21 1 0.4568 -1.5640 -5.0933 22 6 1.1460 -2.9738 -3.6396 23 6 0.0409 -3.7372 -3.5677 24 6 0.2259 -4.6246 -2.4826 25 6 1.4333 -4.3507 -1.9568 26 8 1.9886 -3.3541 -2.6654 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7087 1.1612 3.4844 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7490 -1.2492 36 1 3.2451 0.2609 -5.4287 37 1 4.0970 -0.1910 -3.9203 38 1 4.1752 -2.5278 -4.5326 39 1 4.4111 -1.7281 -6.1231 40 1 2.3511 -3.4798 -5.7886 41 1 2.0892 -1.9660 -6.7155 42 1 -0.8218 -3.6835 -4.2153 43 1 -0.4689 -5.3778 -2.1416 44 1 1.8821 -4.8508 -1.1113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332351501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:55 Heat of formation + Delta-G solvation = -49.478957 kcal Electronic energy + Delta-G solvation = -28268.521140 eV Core-core repulsion = 24508.152046 eV Total energy + Delta-G solvation = -3760.369094 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.49579 -38.50560 -36.52981 -36.22686 -35.26449 -32.93632 -31.63514 -30.97069 -30.94468 -27.43401 -26.58146 -25.68973 -25.20259 -22.82077 -21.81467 -21.48241 -20.37909 -19.36833 -18.58911 -17.65140 -17.10666 -16.20591 -15.95828 -15.58198 -15.32151 -14.97783 -14.79093 -14.14482 -13.96298 -13.73981 -13.19102 -12.96580 -12.91183 -12.68746 -12.60454 -12.46078 -12.37071 -12.04383 -11.60241 -11.48983 -11.45714 -11.20526 -11.05705 -11.02499 -10.97712 -10.90781 -10.65310 -10.38489 -10.24999 -10.07892 -9.76324 -9.61235 -9.57579 -9.02265 -8.61048 -8.37974 -8.36191 -6.01002 -4.12628 0.83869 1.80562 2.71947 3.04595 3.18408 3.27108 3.32737 3.33959 4.29995 4.34257 4.41233 4.43136 4.63927 4.82677 4.95314 5.13062 5.20286 5.23937 5.25859 5.38762 5.58443 5.61755 5.69214 5.70075 5.78106 5.79202 5.92338 5.97642 6.06049 6.15591 6.21749 6.46227 6.46705 6.62022 6.75433 6.82821 6.93678 7.06814 7.26255 7.34582 7.53452 7.69695 8.00138 8.12125 8.35880 8.85270 9.52089 11.00425 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.005414 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.238970 B = 5170.838215 C = 6056.738489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.084 3.916 3 C -0.164 4.164 4 C -0.498 4.498 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 C -0.575 4.575 13 S 2.601 3.399 14 O -0.957 6.957 15 O -0.960 6.960 16 N -1.015 6.015 17 C 0.120 3.880 18 C -0.131 4.131 19 C -0.122 4.122 20 C 0.236 3.764 21 H 0.108 0.892 22 C -0.046 4.046 23 C -0.187 4.187 24 C -0.217 4.217 25 C -0.030 4.030 26 O -0.164 6.164 27 H 0.095 0.905 28 H 0.026 0.974 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.026 0.974 32 H 0.095 0.905 33 H 0.262 0.738 34 H 0.115 0.885 35 H 0.121 0.879 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.148 0.852 43 H 0.148 0.852 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.175 -9.205 -15.426 18.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.081 3.919 3 C -0.221 4.221 4 C -0.538 4.538 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.723 3.277 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 C -0.709 4.709 13 S 2.702 3.298 14 O -0.948 6.948 15 O -0.951 6.951 16 N -0.850 5.850 17 C -0.005 4.005 18 C -0.170 4.170 19 C -0.160 4.160 20 C 0.129 3.871 21 H 0.126 0.874 22 C -0.098 4.098 23 C -0.206 4.206 24 C -0.236 4.236 25 C -0.098 4.098 26 O -0.060 6.060 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.044 0.956 32 H 0.114 0.886 33 H 0.073 0.927 34 H 0.134 0.866 35 H 0.139 0.861 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.166 0.834 43 H 0.166 0.834 44 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 2.794 -8.085 -15.312 17.540 hybrid contribution 0.430 -1.257 1.356 1.899 sum 3.224 -9.343 -13.956 17.101 Atomic orbital electron populations 1.22252 0.96975 1.00534 1.02157 1.17920 0.92755 0.92086 0.89112 1.22278 0.99710 0.97922 1.02226 1.20878 1.31574 1.11994 0.89319 0.92431 1.24932 0.94937 0.95006 0.98844 1.69798 1.36326 1.22615 1.23511 0.86611 0.79137 0.79697 0.82246 1.20297 1.21176 1.20320 1.30555 1.11061 1.13093 1.16200 1.05531 0.74568 0.74592 0.75093 1.93532 1.29122 1.86520 1.85596 1.93536 1.78327 1.37500 1.85746 1.59164 1.30178 1.45442 1.50171 1.22020 0.84094 0.97256 0.97149 1.22857 0.96707 0.96454 1.00967 1.22729 0.94387 1.01705 0.97224 1.19775 0.97920 0.80926 0.88487 0.87420 1.22890 0.91162 1.01435 0.94272 1.21569 0.99121 0.98678 1.01280 1.21800 0.98478 1.04069 0.99250 1.24146 0.95304 0.91742 0.98641 1.84079 1.42572 1.43200 1.36111 0.88668 0.95555 0.94589 0.94478 0.95551 0.88611 0.92722 0.86648 0.86100 0.91105 0.90485 0.90259 0.89879 0.89767 0.89748 0.83381 0.83436 0.78044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.15 7.78 37.16 0.29 -3.86 16 2 C 0.08 2.10 0.52 -155.66 -0.08 2.02 16 3 C -0.16 -4.17 7.77 37.16 0.29 -3.88 16 4 C -0.50 -13.32 8.01 -34.44 -0.28 -13.60 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.88 -24.47 9.35 55.43 0.52 -23.95 16 8 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 C -0.58 -12.21 4.89 37.16 0.18 -12.03 16 13 S 2.60 52.79 4.35 -107.50 -0.47 52.32 16 14 O -0.96 -21.42 15.23 -57.54 -0.88 -22.30 16 15 O -0.96 -21.42 15.22 -57.54 -0.88 -22.29 16 16 N -1.01 -15.64 3.33 -105.51 -0.35 -15.99 16 17 C 0.12 1.46 6.89 -2.41 -0.02 1.44 16 18 C -0.13 -1.20 7.10 -24.47 -0.17 -1.37 16 19 C -0.12 -1.11 6.48 -24.90 -0.16 -1.27 16 20 C 0.24 3.08 3.21 -68.11 -0.22 2.86 16 21 H 0.11 1.34 8.14 -51.93 -0.42 0.91 16 22 C -0.05 -0.66 5.53 -35.63 -0.20 -0.86 16 23 C -0.19 -2.54 10.80 -39.70 -0.43 -2.97 16 24 C -0.22 -2.84 10.91 -39.70 -0.43 -3.27 16 25 C -0.03 -0.41 11.84 29.41 0.35 -0.06 16 26 O -0.16 -2.46 8.43 5.72 0.05 -2.41 16 27 H 0.09 2.60 6.07 -51.93 -0.32 2.28 16 28 H 0.03 0.65 5.46 -51.93 -0.28 0.36 16 29 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.03 0.64 5.46 -51.93 -0.28 0.36 16 32 H 0.10 2.60 6.07 -51.93 -0.32 2.29 16 33 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.12 2.26 8.14 -51.92 -0.42 1.84 16 35 H 0.12 2.48 5.55 -51.92 -0.29 2.19 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 41 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.15 1.70 8.06 -52.48 -0.42 1.28 16 43 H 0.15 1.59 8.06 -52.49 -0.42 1.16 16 44 H 0.20 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -32.89 353.58 -9.17 -42.07 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -6.51 Total: 6.64 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: -0.97 Total: -35.19 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.17 Total: -39.95 kcal Atomic # 8 Polarization: -45.30 SS G_CDS: -1.70 Total: -47.00 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 52.79 SS G_CDS: -0.47 Total: 52.32 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.89 -9.17 -42.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332351501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.412 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds