Wall clock time and date at job start Tue Mar 31 2020 15:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46925 * 119.99837 * 2 1 3 5 5 H 1.07999 * 119.99515 * 120.00667 * 4 2 1 6 6 C 1.37870 * 120.00176 * 300.00134 * 4 2 1 7 7 N 1.31520 * 119.99883 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00043 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47288 * 59.99994 * 8 6 4 10 10 H 1.48503 * 109.47086 * 179.97438 * 8 6 4 11 11 H 1.48505 * 109.46819 * 299.99648 * 8 6 4 12 12 C 1.52997 * 109.47143 * 239.99871 * 2 1 3 13 13 S 1.81399 * 109.47147 * 59.99923 * 12 2 1 14 14 O 1.42106 * 110.54352 * 291.62304 * 13 12 2 15 15 O 1.42104 * 110.53977 * 68.37293 * 13 12 2 16 16 N 1.65593 * 104.45079 * 179.97438 * 13 12 2 17 17 C 1.47433 * 125.64981 * 269.69305 * 16 13 12 18 18 C 1.55122 * 104.72201 * 155.81625 * 17 16 13 19 19 C 1.55157 * 101.48998 * 37.29655 * 18 17 16 20 20 C 1.47022 * 125.65065 * 89.99666 * 16 13 12 21 21 H 1.09005 * 109.88125 * 61.60687 * 20 16 13 22 22 C 1.50693 * 109.88358 * 300.59973 * 20 16 13 23 23 C 1.34513 * 125.79221 * 139.99824 * 22 20 16 24 24 C 1.41386 * 106.84390 * 179.97438 * 23 22 20 25 25 C 1.34509 * 106.83709 * 359.97438 * 24 23 22 26 26 O 1.34301 * 108.42215 * 359.73640 * 25 24 23 27 27 H 1.09004 * 109.47059 * 299.99666 * 1 2 3 28 28 H 1.08992 * 109.47060 * 60.00150 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.47280 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.46777 * 300.00347 * 3 2 1 32 32 H 1.09000 * 109.47140 * 59.99774 * 3 2 1 33 33 H 0.97004 * 119.99507 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.46832 * 179.97438 * 12 2 1 35 35 H 1.09004 * 109.47261 * 299.99863 * 12 2 1 36 36 H 1.08998 * 110.36489 * 274.74750 * 17 16 13 37 37 H 1.09000 * 110.36282 * 37.06797 * 17 16 13 38 38 H 1.09003 * 111.19635 * 279.18765 * 18 17 16 39 39 H 1.09005 * 110.90637 * 155.27534 * 18 17 16 40 40 H 1.09001 * 110.72011 * 205.96636 * 19 18 17 41 41 H 1.09003 * 110.71936 * 82.69354 * 19 18 17 42 42 H 1.08004 * 126.57733 * 0.03830 * 23 22 20 43 43 H 1.07995 * 126.57660 * 179.97438 * 24 23 22 44 44 H 1.08004 * 125.78542 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8296 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.8074 -1.1190 4.0078 10 1 1.8278 -0.4192 5.2205 11 1 1.8279 -2.5198 4.0082 12 6 2.0400 -0.7213 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0279 -0.0184 -2.8544 15 8 2.0480 1.4100 -2.8543 16 7 2.0541 -0.7400 -3.9935 17 6 3.3503 -0.4974 -4.6529 18 6 3.7366 -1.8637 -5.2775 19 6 2.3549 -2.3905 -5.7474 20 6 1.3991 -1.8824 -4.6474 21 1 0.4568 -1.5640 -5.0933 22 6 1.1460 -2.9738 -3.6396 23 6 0.0409 -3.7372 -3.5677 24 6 0.2259 -4.6246 -2.4826 25 6 1.4333 -4.3507 -1.9568 26 8 1.9886 -3.3541 -2.6654 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4425 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 0.7087 1.1612 3.4844 34 1 3.1300 -0.7208 -1.2494 35 1 1.6767 -1.7490 -1.2492 36 1 3.2451 0.2609 -5.4287 37 1 4.0970 -0.1910 -3.9203 38 1 4.1752 -2.5278 -4.5326 39 1 4.4111 -1.7281 -6.1231 40 1 2.3511 -3.4798 -5.7886 41 1 2.0892 -1.9660 -6.7155 42 1 -0.8218 -3.6835 -4.2153 43 1 -0.4689 -5.3778 -2.1416 44 1 1.8821 -4.8508 -1.1113 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332351501.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:54 Heat of formation + Delta-G solvation = -70.115507 kcal Electronic energy + Delta-G solvation = -28269.416008 eV Core-core repulsion = 24508.152046 eV Total energy + Delta-G solvation = -3761.263962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.52054 -39.47271 -38.21579 -38.16586 -36.97677 -33.96549 -33.65658 -31.97397 -31.89918 -28.40308 -28.35558 -27.75951 -27.27640 -23.84993 -22.75581 -22.42424 -21.50570 -21.19143 -19.91287 -19.09288 -18.25985 -17.91122 -17.31310 -17.01237 -16.76456 -16.59226 -16.34644 -15.42194 -15.00444 -14.94318 -14.71149 -14.58455 -14.47057 -14.03816 -13.89891 -13.69179 -13.55926 -13.34517 -13.24030 -13.14438 -12.89413 -12.84494 -12.68291 -12.57024 -12.29461 -12.23086 -12.16952 -12.03820 -12.01060 -11.68207 -11.62433 -11.43266 -10.80826 -10.70384 -10.43652 -10.11657 -9.37765 -8.04677 -6.23499 -0.73782 0.76642 1.43503 1.44091 1.51601 1.63296 1.82362 2.09962 2.42616 2.80184 3.05705 3.17820 3.52410 3.68399 3.75150 3.98123 4.09417 4.14759 4.20909 4.26770 4.32494 4.53496 4.58092 4.74458 4.79482 4.79883 4.84075 4.89392 4.92386 4.97164 4.99243 5.03013 5.08391 5.15478 5.19469 5.32241 5.34291 5.42927 5.48020 5.60948 5.63906 5.90773 6.06351 6.23223 6.31017 6.79688 7.44317 8.95547 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.005414 C = 0.004622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.238970 B = 5170.838215 C = 6056.738489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.073 3.927 3 C -0.159 4.159 4 C -0.515 4.515 5 H 0.061 0.939 6 C 0.019 3.981 7 N -0.909 5.909 8 Si 0.956 3.044 9 H -0.272 1.272 10 H -0.286 1.286 11 H -0.270 1.270 12 C -0.577 4.577 13 S 2.619 3.381 14 O -0.983 6.983 15 O -0.985 6.985 16 N -1.012 6.012 17 C 0.104 3.896 18 C -0.121 4.121 19 C -0.111 4.111 20 C 0.223 3.777 21 H 0.111 0.889 22 C -0.062 4.062 23 C -0.199 4.199 24 C -0.225 4.225 25 C -0.046 4.046 26 O -0.179 6.179 27 H 0.074 0.926 28 H 0.028 0.972 29 H 0.034 0.966 30 H 0.040 0.960 31 H 0.028 0.972 32 H 0.074 0.926 33 H 0.262 0.738 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.117 0.883 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.164 0.836 43 H 0.168 0.832 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.250 -10.841 -16.844 20.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.071 3.929 3 C -0.217 4.217 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.181 4.181 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.197 1.197 10 H -0.212 1.212 11 H -0.196 1.196 12 C -0.710 4.710 13 S 2.719 3.281 14 O -0.974 6.974 15 O -0.976 6.976 16 N -0.850 5.850 17 C -0.020 4.020 18 C -0.160 4.160 19 C -0.150 4.150 20 C 0.117 3.883 21 H 0.129 0.871 22 C -0.113 4.113 23 C -0.219 4.219 24 C -0.244 4.244 25 C -0.114 4.114 26 O -0.075 6.075 27 H 0.093 0.907 28 H 0.047 0.953 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.135 0.865 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.182 0.818 43 H 0.185 0.815 44 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 3.873 -9.727 -16.721 19.728 hybrid contribution 0.083 -0.770 1.727 1.892 sum 3.955 -10.497 -14.994 18.725 Atomic orbital electron populations 1.22159 0.97855 1.00052 1.01182 1.17903 0.92175 0.92052 0.90766 1.22205 0.99842 0.98372 1.01273 1.21182 1.31741 1.12263 0.90252 0.92122 1.25683 0.95099 0.95649 1.01635 1.69936 1.37092 1.23696 1.23988 0.85654 0.78753 0.78785 0.78697 1.19671 1.21151 1.19558 1.30479 1.11798 1.13069 1.15672 1.04593 0.73859 0.74282 0.75353 1.93487 1.30895 1.86938 1.86064 1.93494 1.78632 1.39250 1.86215 1.58753 1.31717 1.45856 1.48705 1.22421 0.82428 0.99757 0.97398 1.22862 0.97267 0.94127 1.01705 1.22781 0.92988 1.02451 0.96737 1.20203 0.99143 0.79783 0.89132 0.87120 1.23218 0.91459 1.02038 0.94627 1.21930 0.99495 0.98753 1.01724 1.22147 0.98788 1.04390 0.99037 1.24717 0.95794 0.91644 0.99207 1.84054 1.43156 1.43775 1.36540 0.90735 0.95345 0.94717 0.94077 0.95296 0.90700 0.92826 0.85458 0.85556 0.89653 0.90883 0.90924 0.86516 0.88602 0.87108 0.81816 0.81493 0.75948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -8.11 7.78 71.98 0.56 -7.55 16 2 C 0.07 3.72 0.52 -52.93 -0.03 3.69 16 3 C -0.16 -8.26 7.77 71.98 0.56 -7.70 16 4 C -0.52 -27.60 8.01 25.60 0.21 -27.40 16 5 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 6 C 0.02 1.01 5.15 84.65 0.44 1.44 16 7 N -0.91 -51.09 9.35 21.45 0.20 -50.89 16 8 Si 0.96 42.48 29.54 68.60 2.03 44.51 16 9 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 10 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 12 C -0.58 -24.46 4.89 71.98 0.35 -24.11 16 13 S 2.62 105.78 4.35 -56.49 -0.25 105.53 16 14 O -0.98 -44.19 15.23 -127.65 -1.94 -46.13 16 15 O -0.99 -43.95 15.22 -127.65 -1.94 -45.89 16 16 N -1.01 -29.85 3.33 -487.72 -1.62 -31.48 16 17 C 0.10 2.30 6.89 86.93 0.60 2.90 16 18 C -0.12 -1.80 7.10 32.06 0.23 -1.57 16 19 C -0.11 -1.64 6.48 31.78 0.21 -1.43 16 20 C 0.22 5.41 3.21 44.59 0.14 5.55 16 21 H 0.11 2.57 8.14 -2.38 -0.02 2.55 16 22 C -0.06 -1.70 5.53 24.83 0.14 -1.57 16 23 C -0.20 -5.18 10.80 22.19 0.24 -4.94 16 24 C -0.22 -5.59 10.91 22.19 0.24 -5.35 16 25 C -0.05 -1.19 11.84 66.97 0.79 -0.40 16 26 O -0.18 -5.18 8.43 -2.45 -0.02 -5.20 16 27 H 0.07 4.19 6.07 -2.39 -0.01 4.18 16 28 H 0.03 1.43 5.46 -2.39 -0.01 1.42 16 29 H 0.03 1.75 8.14 -2.38 -0.02 1.73 16 30 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.03 1.44 5.46 -2.39 -0.01 1.43 16 32 H 0.07 4.18 6.07 -2.39 -0.01 4.16 16 33 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 34 H 0.13 4.96 8.14 -2.39 -0.02 4.94 16 35 H 0.13 5.17 5.55 -2.39 -0.01 5.16 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 40 H 0.10 1.25 7.83 -2.39 -0.02 1.23 16 41 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.16 3.53 8.06 -2.91 -0.02 3.50 16 43 H 0.17 3.31 8.06 -2.91 -0.02 3.28 16 44 H 0.22 4.40 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -71.06 353.58 2.12 -68.94 By element: Atomic # 1 Polarization: 28.05 SS G_CDS: 1.00 Total: 29.05 kcal Atomic # 6 Polarization: -73.10 SS G_CDS: 4.67 Total: -68.43 kcal Atomic # 7 Polarization: -80.95 SS G_CDS: -1.42 Total: -82.37 kcal Atomic # 8 Polarization: -93.32 SS G_CDS: -3.91 Total: -97.23 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Atomic # 16 Polarization: 105.78 SS G_CDS: -0.25 Total: 105.53 kcal Total: -71.06 2.12 -68.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332351501.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.180 kcal (2) G-P(sol) polarization free energy of solvation -71.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds