Wall clock time and date at job start Tue Mar 31 2020 15:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 N 1.46506 * 109.47098 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00116 * 74.87890 * 4 3 2 6 6 H 1.07997 * 120.00319 * 181.57542 * 5 4 3 7 7 C 1.38821 * 119.99812 * 1.57124 * 5 4 3 8 8 N 1.31621 * 120.00220 * 5.70963 * 7 5 4 9 9 Si 1.86804 * 119.99915 * 185.70311 * 7 5 4 10 10 H 1.48498 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46795 * 120.00370 * 9 7 5 12 12 H 1.48499 * 109.47346 * 240.00470 * 9 7 5 13 13 S 1.65596 * 119.99722 * 255.15316 * 4 3 2 14 14 O 1.42105 * 106.39741 * 205.70583 * 13 4 3 15 15 O 1.42098 * 106.40442 * 338.62134 * 13 4 3 16 16 C 1.76198 * 107.22163 * 92.16844 * 13 4 3 17 17 C 1.38166 * 120.02582 * 245.97669 * 16 13 4 18 18 C 1.38249 * 120.05040 * 179.78721 * 17 16 13 19 19 C 1.50706 * 119.93951 * 180.25179 * 18 17 16 20 20 C 1.38284 * 120.11538 * 0.46121 * 18 17 16 21 21 C 1.38123 * 120.05261 * 359.79137 * 20 18 17 22 22 C 1.50706 * 120.02484 * 179.97438 * 21 20 18 23 23 C 1.38710 * 120.02841 * 66.24199 * 16 13 4 24 24 O 1.35899 * 120.05761 * 359.96505 * 23 16 13 25 25 C 1.42903 * 117.00026 * 97.20075 * 24 23 16 26 26 H 1.09005 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47293 * 299.99678 * 1 2 3 28 28 H 1.08997 * 109.47041 * 60.00181 * 1 2 3 29 29 H 1.09003 * 109.47235 * 239.99792 * 2 1 3 30 30 H 1.09002 * 109.47502 * 119.99750 * 2 1 3 31 31 H 1.08993 * 109.47372 * 59.99663 * 3 2 1 32 32 H 1.08997 * 109.47046 * 299.99816 * 3 2 1 33 33 H 0.96994 * 120.00369 * 179.97438 * 8 7 5 34 34 H 1.07995 * 119.97407 * 0.02562 * 17 16 13 35 35 H 1.09000 * 109.47231 * 270.20776 * 19 18 17 36 36 H 1.08998 * 109.47073 * 30.20603 * 19 18 17 37 37 H 1.08997 * 109.47016 * 150.21296 * 19 18 17 38 38 H 1.08000 * 119.97181 * 179.76417 * 20 18 17 39 39 H 1.09004 * 109.46767 * 270.01999 * 22 21 20 40 40 H 1.08995 * 109.46748 * 30.01927 * 22 21 20 41 41 H 1.09001 * 109.46931 * 150.02120 * 22 21 20 42 42 H 1.09008 * 109.47021 * 185.51675 * 25 24 23 43 43 H 1.08994 * 109.47244 * 305.51571 * 25 24 23 44 44 H 1.08999 * 109.47250 * 65.52068 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.1330 -1.1439 6 1 5.2698 1.1081 -1.1369 7 6 3.4969 0.8511 -2.3131 8 7 2.1887 0.9903 -2.3524 9 14 4.4209 0.2743 -3.8307 10 1 5.8727 0.1996 -3.5277 11 1 3.9289 -1.0691 -4.2288 12 1 4.1954 1.2333 -4.9418 13 16 4.3323 1.8102 1.3872 14 8 5.5968 2.3134 0.9783 15 8 3.4333 2.5423 2.2087 16 6 4.6479 0.2923 2.2244 17 6 4.0536 0.0399 3.4459 18 6 4.2975 -1.1527 4.1012 19 6 3.6434 -1.4278 5.4308 20 6 5.1438 -2.0919 3.5408 21 6 5.7444 -1.8421 2.3223 22 6 6.6671 -2.8658 1.7125 23 6 5.4975 -0.6479 1.6603 24 8 6.0870 -0.4001 0.4612 25 6 7.4224 0.1078 0.4873 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.7044 0.7937 -3.1694 34 1 3.3951 0.7733 3.8873 35 1 4.2841 -1.0623 6.2334 36 1 2.6806 -0.9188 5.4743 37 1 3.4928 -2.5011 5.5464 38 1 5.3356 -3.0212 4.0565 39 1 7.6876 -2.6805 2.0478 40 1 6.3581 -3.8639 2.0228 41 1 6.6228 -2.7931 0.6258 42 1 7.7377 0.3534 -0.5269 43 1 7.4581 1.0044 1.1060 44 1 8.0902 -0.6471 0.9025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337740151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:22 Heat of formation + Delta-G solvation = -73.145131 kcal Electronic energy + Delta-G solvation = -28336.997678 eV Core-core repulsion = 24575.602342 eV Total energy + Delta-G solvation = -3761.395336 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.72451 -37.22578 -36.41863 -35.74625 -34.49930 -32.82848 -31.99483 -31.50220 -31.07568 -27.31298 -27.13273 -25.86733 -25.08892 -23.51613 -22.49719 -20.48326 -20.28515 -18.44342 -17.49769 -17.06624 -16.69553 -15.99884 -15.77058 -15.08284 -14.44079 -14.24604 -14.05981 -13.68651 -13.61293 -13.57540 -13.29767 -13.27259 -13.03202 -12.62282 -12.39286 -12.03265 -11.91086 -11.87411 -11.55797 -11.51498 -11.28037 -11.07952 -10.99691 -10.87958 -10.79610 -10.76934 -10.51365 -10.38242 -10.23650 -10.03756 -9.75964 -9.63211 -9.38897 -8.91592 -8.67337 -8.04305 -7.94491 -6.12256 -3.74771 1.26814 1.55251 1.75250 3.20561 3.26314 3.31541 3.64688 4.08360 4.30376 4.50731 4.83759 4.94899 5.00385 5.18513 5.36687 5.40590 5.47926 5.62982 5.64679 5.67642 5.74540 5.85651 5.94225 5.95888 5.99723 6.11553 6.13599 6.17089 6.31591 6.33327 6.40531 6.50515 6.56590 6.68134 6.75006 6.78240 7.02536 7.05819 7.08277 7.20677 7.40396 7.77242 7.96850 7.97877 8.54446 8.88120 9.28363 10.63072 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.006733 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.901960 B = 4157.387242 C = 4882.470216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.120 4.120 3 C 0.119 3.881 4 N -0.805 5.805 5 C -0.229 4.229 6 H 0.120 0.880 7 C 0.023 3.977 8 N -0.850 5.850 9 Si 0.924 3.076 10 H -0.266 1.266 11 H -0.282 1.282 12 H -0.282 1.282 13 S 2.576 3.424 14 O -0.976 6.976 15 O -0.997 6.997 16 C -0.675 4.675 17 C -0.028 4.028 18 C -0.122 4.122 19 C -0.109 4.109 20 C -0.078 4.078 21 C -0.134 4.134 22 C -0.108 4.108 23 C 0.190 3.810 24 O -0.320 6.320 25 C 0.038 3.962 26 H 0.034 0.966 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.087 0.913 30 H 0.021 0.979 31 H 0.042 0.958 32 H 0.141 0.859 33 H 0.266 0.734 34 H 0.135 0.865 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.121 0.879 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.075 0.925 42 H 0.093 0.907 43 H 0.067 0.933 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.447 -6.671 6.761 10.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.159 4.159 3 C -0.007 4.007 4 N -0.631 5.631 5 C -0.370 4.370 6 H 0.137 0.863 7 C -0.182 4.182 8 N -0.495 5.495 9 Si 0.750 3.250 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.208 1.208 13 S 2.668 3.332 14 O -0.965 6.965 15 O -0.987 6.987 16 C -0.753 4.753 17 C -0.047 4.047 18 C -0.123 4.123 19 C -0.165 4.165 20 C -0.096 4.096 21 C -0.135 4.135 22 C -0.165 4.165 23 C 0.145 3.855 24 O -0.236 6.236 25 C -0.056 4.056 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.105 0.895 30 H 0.040 0.960 31 H 0.060 0.940 32 H 0.158 0.842 33 H 0.077 0.923 34 H 0.153 0.847 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.139 0.861 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.094 0.906 42 H 0.112 0.888 43 H 0.085 0.915 44 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 3.561 -5.897 6.986 9.811 hybrid contribution 0.380 -1.441 -0.287 1.517 sum 3.941 -7.338 6.699 10.689 Atomic orbital electron populations 1.21595 0.97575 0.99550 1.00817 1.21962 0.94034 0.99114 1.00839 1.22076 0.78834 0.96839 1.02977 1.54405 1.13342 1.77328 1.18062 1.20000 0.92959 1.39701 0.84390 0.86267 1.25296 0.95677 0.97610 0.99659 1.70010 1.06377 1.45415 1.27691 0.85888 0.79915 0.78317 0.80832 1.19060 1.20782 1.20831 1.08807 0.73550 0.78147 0.72650 1.93362 1.42229 1.79429 1.81495 1.93360 1.64882 1.71629 1.68830 1.32618 1.08091 1.27406 1.07177 1.20681 0.95944 0.95890 0.92148 1.19968 0.99598 0.95092 0.97658 1.20730 1.00300 1.01842 0.93656 1.20833 0.95895 0.98540 0.94345 1.20248 1.01102 0.96471 0.95655 1.20678 0.97484 0.96479 1.01838 1.17891 0.91797 0.91018 0.84764 1.86132 1.29511 1.84110 1.23878 1.23045 0.80531 0.98010 1.04044 0.94685 0.94404 0.92377 0.89453 0.96006 0.93987 0.84221 0.92256 0.84740 0.91542 0.91430 0.91849 0.86104 0.91808 0.91857 0.90626 0.88810 0.91474 0.94878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.91 37.16 0.37 -2.17 16 2 C -0.12 -2.62 5.45 -26.73 -0.15 -2.76 16 3 C 0.12 2.77 5.04 -4.04 -0.02 2.75 16 4 N -0.81 -19.67 2.97 -59.91 -0.18 -19.85 16 5 C -0.23 -5.70 8.47 -15.06 -0.13 -5.83 16 6 H 0.12 2.96 6.02 -52.49 -0.32 2.65 16 7 C 0.02 0.56 4.86 -17.43 -0.08 0.47 16 8 N -0.85 -20.26 7.71 55.49 0.43 -19.84 16 9 Si 0.92 19.30 29.56 -169.99 -5.02 14.28 16 10 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 13 S 2.58 61.24 5.27 -107.50 -0.57 60.67 16 14 O -0.98 -24.27 14.09 -62.89 -0.89 -25.15 16 15 O -1.00 -24.91 15.42 -57.17 -0.88 -25.80 16 16 C -0.68 -14.35 5.92 -39.43 -0.23 -14.58 16 17 C -0.03 -0.52 9.20 -39.60 -0.36 -0.89 16 18 C -0.12 -1.96 5.88 -104.60 -0.62 -2.57 16 19 C -0.11 -1.30 10.01 36.01 0.36 -0.94 16 20 C -0.08 -1.19 9.35 -39.61 -0.37 -1.56 16 21 C -0.13 -2.27 5.89 -104.47 -0.62 -2.88 16 22 C -0.11 -1.47 9.10 36.01 0.33 -1.14 16 23 C 0.19 3.83 5.65 -39.22 -0.22 3.60 16 24 O -0.32 -6.51 6.31 -30.60 -0.19 -6.70 16 25 C 0.04 0.65 10.26 101.05 1.04 1.68 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 29 H 0.09 2.07 5.99 -51.93 -0.31 1.76 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.04 0.97 6.77 -51.93 -0.35 0.61 16 32 H 0.14 3.42 5.59 -51.93 -0.29 3.13 16 33 H 0.27 6.02 8.31 -40.82 -0.34 5.68 16 34 H 0.13 2.47 7.33 -52.49 -0.38 2.09 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 38 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 39 H 0.06 0.76 8.06 -51.93 -0.42 0.34 16 40 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.07 1.09 7.53 -51.93 -0.39 0.70 16 42 H 0.09 1.48 8.14 -51.92 -0.42 1.06 16 43 H 0.07 1.24 6.65 -51.93 -0.35 0.90 16 44 H 0.03 0.46 7.50 -51.93 -0.39 0.08 16 LS Contribution 358.56 15.07 5.40 5.40 Total: -1.00 -28.47 358.56 -9.16 -37.63 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -6.55 Total: 6.17 kcal Atomic # 6 Polarization: -26.10 SS G_CDS: -0.71 Total: -26.81 kcal Atomic # 7 Polarization: -39.94 SS G_CDS: 0.25 Total: -39.69 kcal Atomic # 8 Polarization: -55.69 SS G_CDS: -1.96 Total: -57.65 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: 61.24 SS G_CDS: -0.57 Total: 60.67 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.47 -9.16 -37.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.516 kcal (2) G-P(sol) polarization free energy of solvation -28.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds