Wall clock time and date at job start Tue Mar 31 2020 15:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 N 1.46506 * 109.47098 * 179.97438 * 3 2 1 5 5 C 1.36934 * 120.00116 * 74.87890 * 4 3 2 6 6 H 1.07997 * 120.00319 * 181.57542 * 5 4 3 7 7 C 1.38821 * 119.99812 * 1.57124 * 5 4 3 8 8 N 1.31621 * 120.00220 * 5.70963 * 7 5 4 9 9 Si 1.86804 * 119.99915 * 185.70311 * 7 5 4 10 10 H 1.48498 * 109.46862 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46795 * 120.00370 * 9 7 5 12 12 H 1.48499 * 109.47346 * 240.00470 * 9 7 5 13 13 S 1.65596 * 119.99722 * 255.15316 * 4 3 2 14 14 O 1.42105 * 106.39741 * 205.70583 * 13 4 3 15 15 O 1.42098 * 106.40442 * 338.62134 * 13 4 3 16 16 C 1.76198 * 107.22163 * 92.16844 * 13 4 3 17 17 C 1.38166 * 120.02582 * 245.97669 * 16 13 4 18 18 C 1.38249 * 120.05040 * 179.78721 * 17 16 13 19 19 C 1.50706 * 119.93951 * 180.25179 * 18 17 16 20 20 C 1.38284 * 120.11538 * 0.46121 * 18 17 16 21 21 C 1.38123 * 120.05261 * 359.79137 * 20 18 17 22 22 C 1.50706 * 120.02484 * 179.97438 * 21 20 18 23 23 C 1.38710 * 120.02841 * 66.24199 * 16 13 4 24 24 O 1.35899 * 120.05761 * 359.96505 * 23 16 13 25 25 C 1.42903 * 117.00026 * 97.20075 * 24 23 16 26 26 H 1.09005 * 109.46734 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47293 * 299.99678 * 1 2 3 28 28 H 1.08997 * 109.47041 * 60.00181 * 1 2 3 29 29 H 1.09003 * 109.47235 * 239.99792 * 2 1 3 30 30 H 1.09002 * 109.47502 * 119.99750 * 2 1 3 31 31 H 1.08993 * 109.47372 * 59.99663 * 3 2 1 32 32 H 1.08997 * 109.47046 * 299.99816 * 3 2 1 33 33 H 0.96994 * 120.00369 * 179.97438 * 8 7 5 34 34 H 1.07995 * 119.97407 * 0.02562 * 17 16 13 35 35 H 1.09000 * 109.47231 * 270.20776 * 19 18 17 36 36 H 1.08998 * 109.47073 * 30.20603 * 19 18 17 37 37 H 1.08997 * 109.47016 * 150.21296 * 19 18 17 38 38 H 1.08000 * 119.97181 * 179.76417 * 20 18 17 39 39 H 1.09004 * 109.46767 * 270.01999 * 22 21 20 40 40 H 1.08995 * 109.46748 * 30.01927 * 22 21 20 41 41 H 1.09001 * 109.46931 * 150.02120 * 22 21 20 42 42 H 1.09008 * 109.47021 * 185.51675 * 25 24 23 43 43 H 1.08994 * 109.47244 * 305.51571 * 25 24 23 44 44 H 1.08999 * 109.47250 * 65.52068 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1902 1.1330 -1.1439 6 1 5.2698 1.1081 -1.1369 7 6 3.4969 0.8511 -2.3131 8 7 2.1887 0.9903 -2.3524 9 14 4.4209 0.2743 -3.8307 10 1 5.8727 0.1996 -3.5277 11 1 3.9289 -1.0691 -4.2288 12 1 4.1954 1.2333 -4.9418 13 16 4.3323 1.8102 1.3872 14 8 5.5968 2.3134 0.9783 15 8 3.4333 2.5423 2.2087 16 6 4.6479 0.2923 2.2244 17 6 4.0536 0.0399 3.4459 18 6 4.2975 -1.1527 4.1012 19 6 3.6434 -1.4278 5.4308 20 6 5.1438 -2.0919 3.5408 21 6 5.7444 -1.8421 2.3223 22 6 6.6671 -2.8658 1.7125 23 6 5.4975 -0.6479 1.6603 24 8 6.0870 -0.4001 0.4612 25 6 7.4224 0.1078 0.4873 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 1.7044 0.7937 -3.1694 34 1 3.3951 0.7733 3.8873 35 1 4.2841 -1.0623 6.2334 36 1 2.6806 -0.9188 5.4743 37 1 3.4928 -2.5011 5.5464 38 1 5.3356 -3.0212 4.0565 39 1 7.6876 -2.6805 2.0478 40 1 6.3581 -3.8639 2.0228 41 1 6.6228 -2.7931 0.6258 42 1 7.7377 0.3534 -0.5269 43 1 7.4581 1.0044 1.1060 44 1 8.0902 -0.6471 0.9025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337740151.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:21 Heat of formation + Delta-G solvation = -89.135303 kcal Electronic energy + Delta-G solvation = -28337.691064 eV Core-core repulsion = 24575.602342 eV Total energy + Delta-G solvation = -3762.088722 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.11824 -38.68919 -38.21713 -37.67815 -36.52563 -34.05210 -33.68993 -32.86778 -32.84532 -28.64395 -28.22713 -27.61023 -26.39935 -25.29721 -23.97648 -22.05142 -21.74116 -20.29095 -19.06952 -18.86489 -18.42297 -17.50455 -17.42927 -16.53209 -16.25025 -16.05478 -15.39897 -15.33340 -15.07519 -14.91444 -14.73224 -14.61634 -14.30108 -14.00410 -13.72120 -13.48667 -13.22338 -13.15445 -13.05510 -13.01407 -12.91334 -12.77917 -12.71174 -12.66186 -12.49114 -12.20165 -12.14635 -12.07209 -11.93547 -11.76984 -11.48095 -11.40011 -10.90889 -10.64332 -10.07756 -9.75035 -9.37407 -7.87209 -5.61977 -0.26643 -0.00455 0.19484 1.52228 1.53710 1.64926 2.24840 2.38406 2.66821 2.92441 3.00479 3.32408 3.63978 3.82298 3.96759 4.19556 4.26983 4.34588 4.40405 4.43877 4.55783 4.56587 4.57859 4.65912 4.71771 4.76457 4.77880 4.82764 4.88907 4.95963 5.05148 5.15349 5.17248 5.26502 5.28023 5.36303 5.36606 5.46300 5.53053 5.62746 5.80478 5.96335 6.14830 6.54117 6.72523 7.09068 7.47900 8.90070 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.006733 C = 0.005733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.901960 B = 4157.387242 C = 4882.470216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.109 4.109 3 C 0.123 3.877 4 N -0.831 5.831 5 C -0.266 4.266 6 H 0.109 0.891 7 C -0.009 4.009 8 N -0.875 5.875 9 Si 0.975 3.025 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.282 1.282 13 S 2.614 3.386 14 O -0.993 6.993 15 O -1.015 7.015 16 C -0.702 4.702 17 C -0.048 4.048 18 C -0.116 4.116 19 C -0.108 4.108 20 C -0.065 4.065 21 C -0.136 4.136 22 C -0.106 4.106 23 C 0.168 3.832 24 O -0.340 6.340 25 C 0.033 3.967 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.014 0.986 31 H 0.037 0.963 32 H 0.127 0.873 33 H 0.265 0.735 34 H 0.131 0.869 35 H 0.085 0.915 36 H 0.068 0.932 37 H 0.090 0.910 38 H 0.168 0.832 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.100 0.900 43 H 0.046 0.954 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.176 -9.567 8.958 13.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.148 4.148 3 C -0.002 4.002 4 N -0.659 5.659 5 C -0.403 4.403 6 H 0.127 0.873 7 C -0.211 4.211 8 N -0.519 5.519 9 Si 0.800 3.200 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.208 1.208 13 S 2.709 3.291 14 O -0.983 6.983 15 O -1.005 7.005 16 C -0.786 4.786 17 C -0.067 4.067 18 C -0.117 4.117 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.137 4.137 22 C -0.163 4.163 23 C 0.123 3.877 24 O -0.257 6.257 25 C -0.060 4.060 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.055 0.945 32 H 0.144 0.856 33 H 0.076 0.924 34 H 0.149 0.851 35 H 0.103 0.897 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.185 0.815 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.065 0.935 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.267 -8.754 9.080 13.315 hybrid contribution 0.284 -0.583 -0.610 0.891 sum 4.552 -9.338 8.470 13.403 Atomic orbital electron populations 1.21526 0.95024 1.00946 1.01288 1.21795 0.96170 0.97571 0.99302 1.21965 0.78581 0.97787 1.01906 1.53860 1.13541 1.79825 1.18651 1.19856 0.92566 1.42469 0.85447 0.87307 1.25791 0.96480 0.97750 1.01112 1.70078 1.06759 1.47225 1.27881 0.85127 0.78928 0.77662 0.78273 1.18984 1.20711 1.20788 1.05992 0.72891 0.77733 0.72490 1.93356 1.42723 1.80122 1.82108 1.93347 1.65542 1.72362 1.69261 1.31946 1.11567 1.26059 1.09028 1.20840 0.96430 0.97690 0.91789 1.20424 0.98841 0.93528 0.98866 1.20843 1.00301 1.03795 0.91528 1.21406 0.93762 0.99678 0.93422 1.20675 1.01314 0.95712 0.96039 1.20756 0.97870 0.96763 1.00891 1.18195 0.92254 0.92242 0.85056 1.86101 1.30780 1.84295 1.24534 1.23172 0.80200 0.98230 1.04430 0.92780 0.93166 0.92644 0.91549 0.96752 0.94514 0.85593 0.92398 0.85101 0.89661 0.91322 0.89142 0.81478 0.89730 0.89020 0.91936 0.88144 0.93523 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.75 9.91 71.98 0.71 -4.04 16 2 C -0.11 -4.87 5.45 30.59 0.17 -4.70 16 3 C 0.12 6.01 5.04 86.38 0.44 6.45 16 4 N -0.83 -42.44 2.97 -343.45 -1.02 -43.46 16 5 C -0.27 -13.88 8.47 84.04 0.71 -13.17 16 6 H 0.11 5.72 6.02 -2.91 -0.02 5.70 16 7 C -0.01 -0.45 4.86 84.86 0.41 -0.04 16 8 N -0.87 -43.53 7.71 21.65 0.17 -43.36 16 9 Si 0.97 40.91 29.56 68.60 2.03 42.94 16 10 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 13 S 2.61 128.50 5.27 -56.49 -0.30 128.20 16 14 O -0.99 -51.33 14.09 -122.53 -1.73 -53.06 16 15 O -1.01 -52.19 15.42 -128.00 -1.97 -54.17 16 16 C -0.70 -29.96 5.92 22.37 0.13 -29.82 16 17 C -0.05 -1.78 9.20 22.25 0.20 -1.58 16 18 C -0.12 -3.31 5.88 -19.85 -0.12 -3.42 16 19 C -0.11 -2.10 10.01 71.24 0.71 -1.38 16 20 C -0.06 -1.69 9.35 22.25 0.21 -1.48 16 21 C -0.14 -4.21 5.89 -19.77 -0.12 -4.33 16 22 C -0.11 -2.47 9.10 71.24 0.65 -1.82 16 23 C 0.17 6.63 5.65 22.51 0.13 6.75 16 24 O -0.34 -13.95 6.31 -81.72 -0.52 -14.46 16 25 C 0.03 1.14 10.26 113.37 1.16 2.30 16 26 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.67 16 28 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 3.26 5.99 -2.39 -0.01 3.25 16 30 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.04 1.76 6.77 -2.39 -0.02 1.75 16 32 H 0.13 6.51 5.59 -2.39 -0.01 6.50 16 33 H 0.26 12.50 8.31 -92.71 -0.77 11.73 16 34 H 0.13 4.80 7.33 -2.91 -0.02 4.78 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.07 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.09 1.31 8.08 -2.39 -0.02 1.29 16 38 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 39 H 0.08 1.63 8.06 -2.38 -0.02 1.61 16 40 H 0.09 1.62 8.09 -2.39 -0.02 1.60 16 41 H 0.06 1.64 7.53 -2.39 -0.02 1.62 16 42 H 0.10 3.21 8.14 -2.38 -0.02 3.19 16 43 H 0.05 1.76 6.65 -2.39 -0.02 1.74 16 44 H 0.07 1.79 7.50 -2.39 -0.02 1.77 16 Total: -1.00 -64.74 358.56 3.06 -61.68 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: 1.00 Total: 25.96 kcal Atomic # 6 Polarization: -55.68 SS G_CDS: 5.40 Total: -50.28 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -0.85 Total: -86.82 kcal Atomic # 8 Polarization: -117.47 SS G_CDS: -4.22 Total: -121.68 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: 128.50 SS G_CDS: -0.30 Total: 128.20 kcal Total: -64.74 3.06 -61.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337740151.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.453 kcal (2) G-P(sol) polarization free energy of solvation -64.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds