Wall clock time and date at job start Tue Mar 31 2020 14:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99693 * 2 1 4 4 C 1.38752 * 120.05972 * 0.24756 * 3 2 1 5 5 C 1.38121 * 119.94447 * 180.31728 * 4 3 2 6 6 C 1.38285 * 120.05515 * 359.68652 * 5 4 3 7 7 C 1.38241 * 120.11398 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05368 * 0.02562 * 7 6 5 9 9 S 1.76196 * 120.02601 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40640 * 1.45888 * 9 8 7 11 11 O 1.42101 * 106.40221 * 228.54180 * 9 8 7 12 12 N 1.65597 * 107.22133 * 115.00048 * 9 8 7 13 13 C 1.46506 * 119.99791 * 64.99502 * 12 9 8 14 14 C 1.53001 * 109.46867 * 165.00419 * 13 12 9 15 15 C 1.53000 * 109.47024 * 300.00115 * 14 13 12 16 16 C 1.52996 * 109.47230 * 59.99763 * 14 13 12 17 17 C 1.52996 * 109.47221 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47630 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99705 * 0.02562 * 18 17 14 20 20 C 1.37871 * 120.00635 * 179.97438 * 18 17 14 21 21 N 1.31518 * 119.99578 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00324 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47137 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47013 * 120.00598 * 22 20 18 25 25 H 1.48502 * 109.47068 * 240.00030 * 22 20 18 26 26 H 1.08993 * 109.47138 * 300.00219 * 1 2 3 27 27 H 1.09007 * 109.47298 * 60.00348 * 1 2 3 28 28 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02529 * 0.02832 * 4 3 2 30 30 H 1.08004 * 119.96910 * 179.70270 * 5 4 3 31 31 H 1.08007 * 119.94434 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.97086 * 180.02562 * 7 6 5 33 33 H 0.96995 * 120.00100 * 245.27417 * 12 9 8 34 34 H 1.08998 * 109.47105 * 285.00387 * 13 12 9 35 35 H 1.09002 * 109.47033 * 45.00797 * 13 12 9 36 36 H 1.09002 * 109.47250 * 60.00212 * 15 14 13 37 37 H 1.08996 * 109.47311 * 180.02562 * 15 14 13 38 38 H 1.09002 * 109.47430 * 299.99961 * 15 14 13 39 39 H 1.09002 * 109.46665 * 60.00390 * 16 14 13 40 40 H 1.09006 * 109.47348 * 179.97438 * 16 14 13 41 41 H 1.08992 * 109.47468 * 300.00038 * 16 14 13 42 42 H 1.09002 * 109.47313 * 300.00001 * 17 14 13 43 43 H 1.09008 * 109.46851 * 59.99810 * 17 14 13 44 44 H 0.97005 * 120.00103 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0003 9 16 4.3929 -0.1914 0.0001 10 8 5.7539 0.2163 0.0287 11 8 3.8520 -1.0230 -1.0174 12 7 4.1057 -0.9633 1.4367 13 6 2.7684 -1.4819 1.7350 14 6 2.8497 -2.4537 2.9140 15 6 3.7787 -3.6151 2.5545 16 6 3.3985 -1.7226 4.1407 17 6 1.4532 -2.9959 3.2252 18 6 1.5332 -3.9536 4.3860 19 1 2.4849 -4.1550 4.8551 20 6 0.3915 -4.5718 4.8498 21 7 -0.7675 -4.3260 4.2787 22 14 0.4907 -5.7583 6.2891 23 1 1.8986 -5.8608 6.7500 24 1 -0.3586 -5.2601 7.4007 25 1 0.0106 -7.0968 5.8611 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2127 2.3203 0.0097 30 1 1.3338 4.5114 -0.0023 31 1 3.7921 4.6381 -0.0115 32 1 5.1344 2.5753 -0.0096 33 1 4.8219 -1.0685 2.0824 34 1 2.1066 -0.6546 1.9911 35 1 2.3775 -2.0029 0.8610 36 1 4.7736 -3.2291 2.3326 37 1 3.8362 -4.3076 3.3942 38 1 3.3877 -4.1360 1.6805 39 1 2.7366 -0.8952 4.3968 40 1 3.4560 -2.4148 4.9808 41 1 4.3934 -1.3367 3.9188 42 1 0.7910 -2.1688 3.4811 43 1 1.0627 -3.5170 2.3510 44 1 -1.5708 -4.7612 4.6047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345044961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:56 Heat of formation + Delta-G solvation = -97.081130 kcal Electronic energy + Delta-G solvation = -27183.077039 eV Core-core repulsion = 23420.643760 eV Total energy + Delta-G solvation = -3762.433279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.40062 -37.85969 -37.46977 -36.85275 -35.61665 -33.48597 -31.87098 -31.63789 -30.37125 -27.43818 -27.01347 -26.41599 -25.74524 -23.47948 -22.71216 -22.42371 -19.46171 -18.70903 -18.33804 -17.36204 -16.82219 -16.44998 -16.33358 -16.03655 -15.38094 -15.15392 -14.61816 -14.54913 -14.23333 -14.06283 -13.84388 -13.30901 -13.00952 -12.74998 -12.59327 -12.33662 -12.07002 -12.00029 -11.89038 -11.83015 -11.71900 -11.66900 -11.32147 -11.17111 -10.99336 -10.81060 -10.65380 -10.59161 -10.32939 -10.18238 -9.85786 -9.61809 -9.18046 -9.07556 -8.86216 -8.57585 -8.36176 -6.01260 -4.00980 0.52604 0.77139 1.14162 3.00407 3.13525 3.29750 3.38148 3.40835 3.42575 3.87935 4.37399 4.45475 4.53087 4.78479 4.85024 5.05618 5.13575 5.15945 5.32321 5.35365 5.45879 5.49083 5.58993 5.68727 5.78853 5.85799 5.91632 5.98023 6.11598 6.24011 6.37150 6.43089 6.43438 6.48942 6.71747 6.76113 7.01104 7.11844 7.14359 7.19240 7.32918 7.63879 7.77883 7.98721 8.42441 9.03902 9.62161 11.10371 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003842 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.003760 B = 7285.591451 C = 8083.310256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.301 6.301 3 C 0.227 3.773 4 C -0.229 4.229 5 C -0.029 4.029 6 C -0.183 4.183 7 C 0.012 3.988 8 C -0.709 4.709 9 S 2.701 3.299 10 O -0.974 6.974 11 O -0.948 6.948 12 N -1.108 6.108 13 C 0.134 3.866 14 C -0.068 4.068 15 C -0.128 4.128 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.508 4.508 19 H 0.060 0.940 20 C 0.056 3.944 21 N -0.897 5.897 22 Si 0.887 3.113 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.285 1.285 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.115 0.885 29 H 0.138 0.862 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.147 0.853 33 H 0.415 0.585 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.064 0.936 38 H 0.048 0.952 39 H 0.045 0.955 40 H 0.066 0.934 41 H 0.031 0.969 42 H 0.016 0.984 43 H 0.019 0.981 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.805 15.625 -8.423 18.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.212 6.212 3 C 0.178 3.822 4 C -0.248 4.248 5 C -0.047 4.047 6 C -0.202 4.202 7 C -0.007 4.007 8 C -0.795 4.795 9 S 2.789 3.211 10 O -0.965 6.965 11 O -0.938 6.938 12 N -0.870 5.870 13 C 0.008 3.992 14 C -0.069 4.069 15 C -0.186 4.186 16 C -0.185 4.185 17 C -0.001 4.001 18 C -0.546 4.546 19 H 0.078 0.922 20 C -0.145 4.145 21 N -0.537 5.537 22 Si 0.716 3.284 23 H -0.198 1.198 24 H -0.212 1.212 25 H -0.211 1.211 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.133 0.867 29 H 0.155 0.845 30 H 0.148 0.852 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.251 0.749 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.083 0.917 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.034 0.966 43 H 0.037 0.963 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.066 15.118 -9.222 18.419 hybrid contribution -0.705 0.094 1.423 1.591 sum 4.360 15.212 -7.798 17.641 Atomic orbital electron populations 1.23270 0.76561 1.05745 1.01506 1.86302 1.23147 1.25442 1.86349 1.18425 0.90574 0.85393 0.87792 1.21372 1.00630 0.92310 1.10502 1.21235 0.94842 0.97189 0.91477 1.21161 0.94053 0.98609 1.06380 1.20827 1.00556 0.90118 0.89200 1.30285 1.04303 1.20298 1.24652 1.01614 0.72727 0.73329 0.73414 1.93543 1.32543 1.83537 1.86828 1.93595 1.79996 1.64875 1.55355 1.55447 1.20320 1.72771 1.38502 1.21630 0.80399 0.97196 0.99937 1.20853 0.99985 0.93781 0.92308 1.21755 0.96908 0.98183 1.01713 1.21764 0.97998 1.00019 0.98752 1.19102 0.88492 0.95723 0.96826 1.21260 0.93608 1.24676 1.15052 0.92187 1.24989 0.95601 0.96946 0.96930 1.69964 0.98468 1.43733 1.41487 0.86610 0.78042 0.81086 0.82688 1.19787 1.21226 1.21147 0.91771 0.92303 0.86664 0.84463 0.85155 0.85073 0.83522 0.74863 0.92354 0.90148 0.94860 0.91706 0.93281 0.93565 0.91511 0.95016 0.96555 0.96269 0.93213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 101.05 0.99 1.24 16 2 O -0.30 -4.22 5.59 -29.44 -0.16 -4.39 16 3 C 0.23 3.03 6.31 -39.22 -0.25 2.79 16 4 C -0.23 -2.45 9.04 -39.43 -0.36 -2.81 16 5 C -0.03 -0.27 10.04 -39.61 -0.40 -0.67 16 6 C -0.18 -1.75 10.04 -39.56 -0.40 -2.15 16 7 C 0.01 0.14 9.55 -39.61 -0.38 -0.24 16 8 C -0.71 -9.73 5.90 -39.43 -0.23 -9.96 16 9 S 2.70 41.39 5.46 -107.50 -0.59 40.81 16 10 O -0.97 -15.87 16.97 -57.17 -0.97 -16.84 16 11 O -0.95 -17.38 16.76 -62.57 -1.05 -18.43 16 12 N -1.11 -16.53 5.32 -10.61 -0.06 -16.58 16 13 C 0.13 2.25 3.40 -4.04 -0.01 2.24 16 14 C -0.07 -1.28 0.55 -154.51 -0.08 -1.37 16 15 C -0.13 -2.37 8.05 37.16 0.30 -2.07 16 16 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 17 C 0.04 0.86 4.04 -27.89 -0.11 0.75 16 18 C -0.51 -13.27 7.65 -34.44 -0.26 -13.54 16 19 H 0.06 1.53 5.68 -52.49 -0.30 1.23 16 20 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 21 N -0.90 -25.68 13.29 55.43 0.74 -24.95 16 22 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 23 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.06 0.61 7.65 -51.93 -0.40 0.21 16 27 H 0.06 0.49 7.67 -51.93 -0.40 0.09 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.79 16 29 H 0.14 1.15 6.30 -52.48 -0.33 0.82 16 30 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 31 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 32 H 0.15 1.50 7.33 -52.48 -0.38 1.12 16 33 H 0.42 5.57 6.48 -34.47 -0.22 5.35 16 34 H 0.06 0.95 6.67 -51.93 -0.35 0.60 16 35 H 0.08 1.43 7.14 -51.93 -0.37 1.06 16 36 H 0.03 0.53 7.20 -51.93 -0.37 0.15 16 37 H 0.06 1.27 6.62 -51.93 -0.34 0.92 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.27 6.62 -51.93 -0.34 0.92 16 41 H 0.03 0.46 6.60 -51.93 -0.34 0.12 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.02 0.49 8.14 -51.92 -0.42 0.06 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -33.15 359.23 -8.94 -42.08 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -6.25 Total: 3.22 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: -0.99 Total: -26.31 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: 0.68 Total: -41.53 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -2.18 Total: -39.66 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: 41.39 SS G_CDS: -0.59 Total: 40.81 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -33.15 -8.94 -42.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345044961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.998 kcal (2) G-P(sol) polarization free energy of solvation -33.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds