Wall clock time and date at job start Tue Mar 31 2020 14:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35900 * 116.99693 * 2 1 4 4 C 1.38752 * 120.05972 * 0.24756 * 3 2 1 5 5 C 1.38121 * 119.94447 * 180.31728 * 4 3 2 6 6 C 1.38285 * 120.05515 * 359.68652 * 5 4 3 7 7 C 1.38241 * 120.11398 * 0.02562 * 6 5 4 8 8 C 1.38166 * 120.05368 * 0.02562 * 7 6 5 9 9 S 1.76196 * 120.02601 * 179.97438 * 8 7 6 10 10 O 1.42102 * 106.40640 * 1.45888 * 9 8 7 11 11 O 1.42101 * 106.40221 * 228.54180 * 9 8 7 12 12 N 1.65597 * 107.22133 * 115.00048 * 9 8 7 13 13 C 1.46506 * 119.99791 * 64.99502 * 12 9 8 14 14 C 1.53001 * 109.46867 * 165.00419 * 13 12 9 15 15 C 1.53000 * 109.47024 * 300.00115 * 14 13 12 16 16 C 1.52996 * 109.47230 * 59.99763 * 14 13 12 17 17 C 1.52996 * 109.47221 * 180.02562 * 14 13 12 18 18 C 1.50696 * 109.47630 * 179.97438 * 17 14 13 19 19 H 1.08000 * 119.99705 * 0.02562 * 18 17 14 20 20 C 1.37871 * 120.00635 * 179.97438 * 18 17 14 21 21 N 1.31518 * 119.99578 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00324 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47137 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47013 * 120.00598 * 22 20 18 25 25 H 1.48502 * 109.47068 * 240.00030 * 22 20 18 26 26 H 1.08993 * 109.47138 * 300.00219 * 1 2 3 27 27 H 1.09007 * 109.47298 * 60.00348 * 1 2 3 28 28 H 1.09004 * 109.47108 * 179.97438 * 1 2 3 29 29 H 1.08004 * 120.02529 * 0.02832 * 4 3 2 30 30 H 1.08004 * 119.96910 * 179.70270 * 5 4 3 31 31 H 1.08007 * 119.94434 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.97086 * 180.02562 * 7 6 5 33 33 H 0.96995 * 120.00100 * 245.27417 * 12 9 8 34 34 H 1.08998 * 109.47105 * 285.00387 * 13 12 9 35 35 H 1.09002 * 109.47033 * 45.00797 * 13 12 9 36 36 H 1.09002 * 109.47250 * 60.00212 * 15 14 13 37 37 H 1.08996 * 109.47311 * 180.02562 * 15 14 13 38 38 H 1.09002 * 109.47430 * 299.99961 * 15 14 13 39 39 H 1.09002 * 109.46665 * 60.00390 * 16 14 13 40 40 H 1.09006 * 109.47348 * 179.97438 * 16 14 13 41 41 H 1.08992 * 109.47468 * 300.00038 * 16 14 13 42 42 H 1.09002 * 109.47313 * 300.00001 * 17 14 13 43 43 H 1.09008 * 109.46851 * 59.99810 * 17 14 13 44 44 H 0.97005 * 120.00103 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3753 0.0052 5 6 1.9208 3.6048 -0.0015 6 6 3.3018 3.6758 -0.0067 7 6 4.0559 2.5172 -0.0059 8 6 3.4311 1.2849 -0.0003 9 16 4.3929 -0.1914 0.0001 10 8 5.7539 0.2163 0.0287 11 8 3.8520 -1.0230 -1.0174 12 7 4.1057 -0.9633 1.4367 13 6 2.7684 -1.4819 1.7350 14 6 2.8497 -2.4537 2.9140 15 6 3.7787 -3.6151 2.5545 16 6 3.3985 -1.7226 4.1407 17 6 1.4532 -2.9959 3.2252 18 6 1.5332 -3.9536 4.3860 19 1 2.4849 -4.1550 4.8551 20 6 0.3915 -4.5718 4.8498 21 7 -0.7675 -4.3260 4.2787 22 14 0.4907 -5.7583 6.2891 23 1 1.8986 -5.8608 6.7500 24 1 -0.3586 -5.2601 7.4007 25 1 0.0106 -7.0968 5.8611 26 1 -0.3633 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3633 -1.0277 -0.0005 29 1 0.2127 2.3203 0.0097 30 1 1.3338 4.5114 -0.0023 31 1 3.7921 4.6381 -0.0115 32 1 5.1344 2.5753 -0.0096 33 1 4.8219 -1.0685 2.0824 34 1 2.1066 -0.6546 1.9911 35 1 2.3775 -2.0029 0.8610 36 1 4.7736 -3.2291 2.3326 37 1 3.8362 -4.3076 3.3942 38 1 3.3877 -4.1360 1.6805 39 1 2.7366 -0.8952 4.3968 40 1 3.4560 -2.4148 4.9808 41 1 4.3934 -1.3367 3.9188 42 1 0.7910 -2.1688 3.4811 43 1 1.0627 -3.5170 2.3510 44 1 -1.5708 -4.7612 4.6047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345044961.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:55 Heat of formation + Delta-G solvation = -119.357128 kcal Electronic energy + Delta-G solvation = -27184.042998 eV Core-core repulsion = 23420.643760 eV Total energy + Delta-G solvation = -3763.399239 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.27825 -39.19659 -38.58147 -38.07045 -36.91562 -35.19791 -33.62554 -32.47997 -31.19222 -28.93653 -28.27230 -27.90834 -27.22328 -24.61664 -24.34486 -23.25212 -20.58916 -19.96336 -19.61967 -18.51767 -18.31824 -17.93221 -17.41369 -17.08647 -16.55762 -16.45837 -16.00354 -15.57299 -15.46525 -15.39204 -14.98208 -14.72566 -14.36549 -13.98141 -13.88896 -13.81863 -13.41425 -13.25027 -13.17367 -13.06312 -12.90995 -12.80103 -12.64026 -12.60086 -12.53261 -12.27858 -12.18716 -12.11040 -11.84946 -11.65162 -11.47294 -10.92342 -10.78264 -10.49135 -10.46435 -10.30256 -9.43652 -8.10682 -6.16044 -0.57139 -0.17169 0.32030 1.41969 1.44503 1.55006 2.02614 2.15004 2.46621 2.49871 2.74350 3.24250 3.35717 3.78831 3.89719 4.02534 4.15645 4.19033 4.27373 4.32099 4.33851 4.36736 4.49815 4.57538 4.72602 4.76770 4.81703 4.85817 4.96937 5.02578 5.04146 5.17851 5.18899 5.26009 5.35545 5.52163 5.55039 5.58166 5.63837 5.67355 5.88198 5.95485 6.13425 6.17142 6.38691 6.98056 7.50678 9.01526 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003842 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.003760 B = 7285.591451 C = 8083.310256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.203 3.797 4 C -0.234 4.234 5 C -0.022 4.022 6 C -0.177 4.177 7 C -0.003 4.003 8 C -0.725 4.725 9 S 2.714 3.286 10 O -0.986 6.986 11 O -0.986 6.986 12 N -1.104 6.104 13 C 0.148 3.852 14 C -0.065 4.065 15 C -0.127 4.127 16 C -0.124 4.124 17 C 0.044 3.956 18 C -0.513 4.513 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.933 5.933 22 Si 0.951 3.049 23 H -0.263 1.263 24 H -0.283 1.283 25 H -0.286 1.286 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.165 0.835 32 H 0.155 0.845 33 H 0.423 0.577 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.052 0.948 38 H 0.036 0.964 39 H 0.045 0.955 40 H 0.051 0.949 41 H 0.064 0.936 42 H -0.004 1.004 43 H -0.010 1.010 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 17.894 -7.835 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.155 3.845 4 C -0.253 4.253 5 C -0.039 4.039 6 C -0.196 4.196 7 C -0.022 4.022 8 C -0.815 4.815 9 S 2.805 3.195 10 O -0.977 6.977 11 O -0.976 6.976 12 N -0.866 5.866 13 C 0.022 3.978 14 C -0.067 4.067 15 C -0.184 4.184 16 C -0.181 4.181 17 C 0.006 3.994 18 C -0.551 4.551 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.575 5.575 22 Si 0.777 3.223 23 H -0.187 1.187 24 H -0.209 1.209 25 H -0.212 1.212 26 H 0.092 0.908 27 H 0.100 0.900 28 H 0.124 0.876 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.183 0.817 32 H 0.173 0.827 33 H 0.260 0.740 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.014 0.986 43 H 0.008 0.992 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.850 17.355 -8.624 20.243 hybrid contribution -0.964 -0.489 1.189 1.607 sum 4.886 16.866 -7.435 19.069 Atomic orbital electron populations 1.23433 0.75470 1.05748 1.03156 1.86250 1.24530 1.26512 1.86770 1.18700 0.90749 0.86043 0.89053 1.21718 1.01745 0.92007 1.09839 1.21750 0.95110 0.97943 0.89141 1.21600 0.94383 0.99179 1.04429 1.21100 1.01344 0.90146 0.89594 1.29940 1.04441 1.19769 1.27342 1.00893 0.72378 0.73490 0.72696 1.93516 1.33498 1.83773 1.86890 1.93545 1.80551 1.66745 1.56781 1.55251 1.19654 1.73188 1.38539 1.21308 0.81425 0.96753 0.98293 1.20726 0.97273 0.94627 0.94061 1.21729 0.98256 0.97742 1.00681 1.21707 0.99769 0.99446 0.97206 1.18948 0.91011 0.94486 0.94959 1.21640 0.93709 1.24492 1.15277 0.91595 1.25804 0.95422 0.98807 0.99593 1.70090 0.99137 1.45104 1.43135 0.85608 0.78436 0.78723 0.79541 1.18664 1.20915 1.21173 0.90754 0.89957 0.87624 0.82397 0.81321 0.81731 0.82703 0.73962 0.91740 0.91677 0.91981 0.92867 0.94455 0.93627 0.92950 0.91687 0.98552 0.99187 0.93239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.36 5.59 -82.85 -0.46 -9.82 16 3 C 0.20 5.27 6.31 22.51 0.14 5.41 16 4 C -0.23 -4.45 9.04 22.36 0.20 -4.25 16 5 C -0.02 -0.31 10.04 22.25 0.22 -0.09 16 6 C -0.18 -2.75 10.04 22.28 0.22 -2.53 16 7 C 0.00 -0.05 9.55 22.25 0.21 0.16 16 8 C -0.73 -19.36 5.90 22.37 0.13 -19.23 16 9 S 2.71 83.35 5.46 -56.49 -0.31 83.05 16 10 O -0.99 -31.68 16.97 -128.00 -2.17 -33.85 16 11 O -0.99 -37.24 16.76 -122.84 -2.06 -39.30 16 12 N -1.10 -32.48 5.32 -187.48 -1.00 -33.47 16 13 C 0.15 5.07 3.40 86.38 0.29 5.36 16 14 C -0.07 -2.50 0.55 -52.18 -0.03 -2.52 16 15 C -0.13 -4.68 8.05 71.98 0.58 -4.10 16 16 C -0.12 -4.23 8.05 71.98 0.58 -3.65 16 17 C 0.04 2.15 4.04 29.85 0.12 2.27 16 18 C -0.51 -27.21 7.65 25.60 0.20 -27.01 16 19 H 0.07 3.36 5.68 -2.91 -0.02 3.34 16 20 C 0.00 0.04 5.46 84.65 0.46 0.51 16 21 N -0.93 -54.73 13.29 21.45 0.28 -54.45 16 22 Si 0.95 43.30 29.54 68.60 2.03 45.32 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H 0.07 1.39 7.65 -2.39 -0.02 1.37 16 27 H 0.08 1.31 7.67 -2.38 -0.02 1.30 16 28 H 0.11 2.40 8.14 -2.38 -0.02 2.38 16 29 H 0.16 2.21 6.30 -2.91 -0.02 2.19 16 30 H 0.17 1.13 8.06 -2.91 -0.02 1.11 16 31 H 0.17 1.42 8.06 -2.91 -0.02 1.39 16 32 H 0.16 2.91 7.33 -2.91 -0.02 2.89 16 33 H 0.42 10.77 6.48 -96.75 -0.63 10.14 16 34 H 0.06 2.13 6.67 -2.39 -0.02 2.12 16 35 H 0.06 2.44 7.14 -2.39 -0.02 2.42 16 36 H 0.06 1.90 7.20 -2.39 -0.02 1.88 16 37 H 0.05 2.07 6.62 -2.39 -0.02 2.05 16 38 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.93 6.62 -2.38 -0.02 1.92 16 41 H 0.06 1.77 6.60 -2.39 -0.02 1.75 16 42 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 43 H -0.01 -0.56 8.14 -2.38 -0.02 -0.58 16 44 H 0.26 14.41 8.31 -92.70 -0.77 13.64 16 Total: -1.00 -72.80 359.23 1.15 -71.65 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: 0.39 Total: 19.11 kcal Atomic # 6 Polarization: -52.68 SS G_CDS: 4.45 Total: -48.23 kcal Atomic # 7 Polarization: -87.21 SS G_CDS: -0.71 Total: -87.92 kcal Atomic # 8 Polarization: -78.28 SS G_CDS: -4.69 Total: -82.98 kcal Atomic # 14 Polarization: 43.30 SS G_CDS: 2.03 Total: 45.32 kcal Atomic # 16 Polarization: 83.35 SS G_CDS: -0.31 Total: 83.05 kcal Total: -72.80 1.15 -71.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345044961.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.712 kcal (2) G-P(sol) polarization free energy of solvation -72.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds