Wall clock time and date at job start Tue Mar 31 2020 15:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46901 * 2 1 4 4 C 1.53001 * 109.47275 * 239.99960 * 2 1 3 5 5 O 1.42896 * 109.47122 * 119.99652 * 2 1 3 6 6 C 1.35678 * 117.00168 * 60.00250 * 5 2 1 7 7 C 1.38918 * 119.68692 * 180.02562 * 6 5 2 8 8 C 1.38377 * 119.11104 * 179.97438 * 7 6 5 9 9 C 1.38836 * 118.48651 * 359.97438 * 8 7 6 10 10 C 1.38042 * 119.28569 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.57928 * 179.97438 * 10 9 8 12 12 S 1.81398 * 109.47325 * 90.00210 * 11 10 9 13 13 O 1.42105 * 108.57879 * 65.51020 * 12 11 10 14 14 O 1.42097 * 108.57629 * 294.48781 * 12 11 10 15 15 C 1.81391 * 101.92304 * 179.97438 * 12 11 10 16 16 C 1.53001 * 109.47348 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47176 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00043 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99618 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47276 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47258 * 120.00400 * 21 19 17 24 24 H 1.48496 * 109.47308 * 240.00400 * 21 19 17 25 25 N 1.31966 * 120.83932 * 0.27464 * 10 9 8 26 26 H 1.08999 * 109.47203 * 300.00334 * 1 2 3 27 27 H 1.09001 * 109.46533 * 60.00252 * 1 2 3 28 28 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46634 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46958 * 299.99562 * 3 2 1 31 31 H 1.08999 * 109.47464 * 59.99826 * 3 2 1 32 32 H 1.08996 * 109.46911 * 299.99957 * 4 2 1 33 33 H 1.08994 * 109.47153 * 60.00227 * 4 2 1 34 34 H 1.09000 * 109.47143 * 179.97438 * 4 2 1 35 35 H 1.07997 * 120.44217 * 359.97438 * 7 6 5 36 36 H 1.07995 * 120.75596 * 179.97438 * 8 7 6 37 37 H 1.07997 * 120.35399 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47154 * 330.00098 * 11 10 9 39 39 H 1.09006 * 109.47117 * 210.00388 * 11 10 9 40 40 H 1.09003 * 109.47583 * 300.00163 * 15 12 11 41 41 H 1.09003 * 109.47643 * 59.99714 * 15 12 11 42 42 H 1.08998 * 109.46690 * 299.99953 * 16 15 12 43 43 H 1.09002 * 109.47143 * 60.00103 * 16 15 12 44 44 H 0.97004 * 119.99712 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.6418 -1.9713 1.3208 7 6 2.0733 -2.6795 2.4354 8 6 1.6940 -4.0023 2.5808 9 6 0.8920 -4.5727 1.6015 10 6 0.5005 -3.8093 0.5201 11 6 -0.3695 -4.4219 -0.5471 12 16 -2.1151 -4.1734 -0.1207 13 8 -2.3969 -2.7811 -0.1599 14 8 -2.4007 -4.9059 1.0629 15 6 -2.9586 -4.9726 -1.5135 16 6 -4.4728 -4.8617 -1.3244 17 6 -5.1735 -5.5251 -2.4819 18 1 -4.5966 -5.9808 -3.2731 19 6 -6.5512 -5.5514 -2.5304 20 7 -7.2537 -4.9970 -1.5666 21 14 -7.4198 -6.3732 -3.9655 22 1 -6.4106 -6.9163 -4.9097 23 1 -8.2710 -7.4804 -3.4606 24 1 -8.2685 -5.3767 -4.6667 25 7 0.8832 -2.5515 0.4060 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.6963 -2.2040 3.1783 36 1 2.0145 -4.5778 3.4365 37 1 0.5780 -5.6027 1.6849 38 1 -0.1611 -5.4895 -0.6172 39 1 -0.1583 -3.9468 -1.5051 40 1 -2.6711 -4.4810 -2.4430 41 1 -2.6741 -6.0240 -1.5557 42 1 -4.7598 -5.3537 -0.3951 43 1 -4.7576 -3.8104 -1.2821 44 1 -8.2230 -5.0152 -1.6009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358708121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:59 Heat of formation + Delta-G solvation = -76.893415 kcal Electronic energy + Delta-G solvation = -26241.875278 eV Core-core repulsion = 22480.317404 eV Total energy + Delta-G solvation = -3761.557874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.11306 -38.77309 -36.49157 -35.53852 -34.45454 -33.89618 -33.03807 -31.85702 -31.19651 -28.06961 -27.48451 -27.29101 -25.62026 -23.77781 -22.75619 -21.39923 -20.67140 -18.47369 -17.45584 -17.06500 -16.99578 -16.17374 -16.01937 -15.70096 -15.57511 -15.34556 -14.93758 -14.54078 -14.45881 -14.18679 -13.67401 -13.50553 -13.11550 -12.80395 -12.63310 -12.60902 -12.51025 -12.21071 -12.13427 -11.92814 -11.76651 -11.71278 -11.54313 -11.49557 -11.09971 -11.04725 -10.95070 -10.87063 -10.60553 -10.38891 -10.36479 -9.88383 -9.67076 -9.49810 -9.15900 -8.53126 -8.50632 -6.12529 -4.18442 0.20156 1.04513 1.12138 2.87602 3.18235 3.25143 3.32468 3.35535 3.54015 3.65341 4.11053 4.29984 4.37585 4.56953 4.73686 4.74460 4.79475 4.89175 4.93844 4.99110 5.07575 5.19570 5.22701 5.40031 5.51287 5.54127 5.61653 5.65617 5.66084 5.67264 5.76184 5.81671 5.91508 5.98906 6.01281 6.23411 6.31220 6.45545 6.60333 7.21228 7.33200 7.38459 7.65974 7.80306 8.16442 8.85383 9.46234 10.98373 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003063 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.274360 B = 9139.190607 C = 9988.736760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.117 3.883 3 C -0.139 4.139 4 C -0.183 4.183 5 O -0.300 6.300 6 C 0.333 3.667 7 C -0.193 4.193 8 C -0.038 4.038 9 C -0.196 4.196 10 C 0.169 3.831 11 C -0.580 4.580 12 S 2.398 3.602 13 O -0.930 6.930 14 O -0.938 6.938 15 C -0.570 4.570 16 C 0.028 3.972 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.058 3.942 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 N -0.516 5.516 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.103 0.897 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.914 5.351 4.189 22.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C 0.080 3.920 3 C -0.196 4.196 4 C -0.240 4.240 5 O -0.208 6.208 6 C 0.154 3.846 7 C -0.214 4.214 8 C -0.063 4.063 9 C -0.217 4.217 10 C 0.032 3.968 11 C -0.704 4.704 12 S 2.581 3.419 13 O -0.927 6.927 14 O -0.935 6.935 15 C -0.703 4.703 16 C -0.010 4.010 17 C -0.561 4.561 18 H 0.081 0.919 19 C -0.145 4.145 20 N -0.527 5.527 21 Si 0.727 3.273 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 N -0.241 5.241 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.121 0.879 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.161 0.839 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.165 0.835 39 H 0.167 0.833 40 H 0.140 0.860 41 H 0.140 0.860 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 21.352 6.509 4.443 22.760 hybrid contribution 0.043 -1.259 -0.964 1.586 sum 21.395 5.250 3.479 22.303 Atomic orbital electron populations 1.22629 0.93227 1.06414 1.02255 1.21800 0.95150 0.91703 0.83379 1.21839 1.01659 0.93044 1.03072 1.22575 1.00720 1.03879 0.96838 1.86276 1.69984 1.19464 1.45050 1.19709 0.89892 0.84966 0.90011 1.21127 1.06232 0.95107 0.98902 1.21401 0.93554 0.93605 0.97747 1.21889 1.01727 1.02386 0.95697 1.19731 0.94976 0.88845 0.93202 1.29610 1.24619 1.09623 1.06572 1.08979 0.76709 0.76958 0.79236 1.93554 1.81590 1.30243 1.87276 1.93546 1.81766 1.74018 1.44170 1.30234 1.12425 1.11932 1.15718 1.18999 0.83188 0.99355 0.99480 1.21052 0.91239 1.37167 1.06618 0.91936 1.25073 0.97591 0.95414 0.96422 1.69975 1.06604 1.43811 1.32299 0.86414 0.79609 0.79183 0.82078 1.19626 1.20798 1.20787 1.67281 1.15115 1.11968 1.29716 0.92607 0.91334 0.87880 0.91917 0.90322 0.91663 0.88990 0.91370 0.92849 0.83925 0.83626 0.83722 0.83469 0.83333 0.85965 0.86038 0.94612 0.94568 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.35 37.16 0.31 -2.26 16 2 C 0.12 1.38 1.11 -90.62 -0.10 1.28 16 3 C -0.14 -1.25 8.84 37.16 0.33 -0.93 16 4 C -0.18 -2.02 8.35 37.16 0.31 -1.71 16 5 O -0.30 -3.90 9.77 -18.74 -0.18 -4.08 16 6 C 0.33 4.47 6.77 -17.12 -0.12 4.35 16 7 C -0.19 -2.12 10.04 -39.28 -0.39 -2.51 16 8 C -0.04 -0.38 10.17 -39.31 -0.40 -0.78 16 9 C -0.20 -2.29 9.73 -39.43 -0.38 -2.68 16 10 C 0.17 2.29 6.04 -82.61 -0.50 1.79 16 11 C -0.58 -6.95 6.09 36.01 0.22 -6.73 16 12 S 2.40 41.16 4.70 -107.50 -0.51 40.66 16 13 O -0.93 -19.00 17.97 -57.83 -1.04 -20.04 16 14 O -0.94 -18.74 18.10 -57.83 -1.05 -19.78 16 15 C -0.57 -10.33 5.74 37.16 0.21 -10.12 16 16 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 17 C -0.52 -14.23 9.11 -34.44 -0.31 -14.54 16 18 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 21 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 N -0.52 -7.34 4.49 -9.55 -0.04 -7.38 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.10 1.67 5.46 -51.93 -0.28 1.38 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.14 5.57 -51.93 -0.29 0.86 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 38 H 0.15 1.22 8.08 -51.93 -0.42 0.80 16 39 H 0.15 1.48 8.14 -51.92 -0.42 1.06 16 40 H 0.12 1.92 8.14 -51.92 -0.42 1.50 16 41 H 0.12 1.87 8.14 -51.92 -0.42 1.45 16 42 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 376.99 15.07 5.68 5.68 Total: -1.00 -35.79 376.99 -9.36 -45.14 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -6.87 Total: 2.18 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: -1.06 Total: -32.73 kcal Atomic # 7 Polarization: -33.71 SS G_CDS: 0.69 Total: -33.02 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -2.27 Total: -43.90 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Atomic # 16 Polarization: 41.16 SS G_CDS: -0.51 Total: 40.66 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.79 -9.36 -45.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358708121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.750 kcal (2) G-P(sol) polarization free energy of solvation -35.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds