Wall clock time and date at job start Tue Mar 31 2020 15:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.46901 * 2 1 4 4 C 1.53001 * 109.47275 * 239.99960 * 2 1 3 5 5 O 1.42896 * 109.47122 * 119.99652 * 2 1 3 6 6 C 1.35678 * 117.00168 * 60.00250 * 5 2 1 7 7 C 1.38918 * 119.68692 * 180.02562 * 6 5 2 8 8 C 1.38377 * 119.11104 * 179.97438 * 7 6 5 9 9 C 1.38836 * 118.48651 * 359.97438 * 8 7 6 10 10 C 1.38042 * 119.28569 * 0.02562 * 9 8 7 11 11 C 1.50702 * 119.57928 * 179.97438 * 10 9 8 12 12 S 1.81398 * 109.47325 * 90.00210 * 11 10 9 13 13 O 1.42105 * 108.57879 * 65.51020 * 12 11 10 14 14 O 1.42097 * 108.57629 * 294.48781 * 12 11 10 15 15 C 1.81391 * 101.92304 * 179.97438 * 12 11 10 16 16 C 1.53001 * 109.47348 * 179.97438 * 15 12 11 17 17 C 1.50698 * 109.47176 * 179.97438 * 16 15 12 18 18 H 1.07994 * 120.00378 * 0.02562 * 17 16 15 19 19 C 1.37880 * 120.00043 * 179.97438 * 17 16 15 20 20 N 1.31518 * 119.99618 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47276 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47258 * 120.00400 * 21 19 17 24 24 H 1.48496 * 109.47308 * 240.00400 * 21 19 17 25 25 N 1.31966 * 120.83932 * 0.27464 * 10 9 8 26 26 H 1.08999 * 109.47203 * 300.00334 * 1 2 3 27 27 H 1.09001 * 109.46533 * 60.00252 * 1 2 3 28 28 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46634 * 179.97438 * 3 2 1 30 30 H 1.09006 * 109.46958 * 299.99562 * 3 2 1 31 31 H 1.08999 * 109.47464 * 59.99826 * 3 2 1 32 32 H 1.08996 * 109.46911 * 299.99957 * 4 2 1 33 33 H 1.08994 * 109.47153 * 60.00227 * 4 2 1 34 34 H 1.09000 * 109.47143 * 179.97438 * 4 2 1 35 35 H 1.07997 * 120.44217 * 359.97438 * 7 6 5 36 36 H 1.07995 * 120.75596 * 179.97438 * 8 7 6 37 37 H 1.07997 * 120.35399 * 180.02562 * 9 8 7 38 38 H 1.08998 * 109.47154 * 330.00098 * 11 10 9 39 39 H 1.09006 * 109.47117 * 210.00388 * 11 10 9 40 40 H 1.09003 * 109.47583 * 300.00163 * 15 12 11 41 41 H 1.09003 * 109.47643 * 59.99714 * 15 12 11 42 42 H 1.08998 * 109.46690 * 299.99953 * 16 15 12 43 43 H 1.09002 * 109.47143 * 60.00103 * 16 15 12 44 44 H 0.97004 * 119.99712 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6735 1.1668 6 6 1.6418 -1.9713 1.3208 7 6 2.0733 -2.6795 2.4354 8 6 1.6940 -4.0023 2.5808 9 6 0.8920 -4.5727 1.6015 10 6 0.5005 -3.8093 0.5201 11 6 -0.3695 -4.4219 -0.5471 12 16 -2.1151 -4.1734 -0.1207 13 8 -2.3969 -2.7811 -0.1599 14 8 -2.4007 -4.9059 1.0629 15 6 -2.9586 -4.9726 -1.5135 16 6 -4.4728 -4.8617 -1.3244 17 6 -5.1735 -5.5251 -2.4819 18 1 -4.5966 -5.9808 -3.2731 19 6 -6.5512 -5.5514 -2.5304 20 7 -7.2537 -4.9970 -1.5666 21 14 -7.4198 -6.3732 -3.9655 22 1 -6.4106 -6.9163 -4.9097 23 1 -8.2710 -7.4804 -3.4606 24 1 -8.2685 -5.3767 -4.6667 25 7 0.8832 -2.5515 0.4060 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 3.1300 1.4425 0.0005 30 1 1.6766 1.9564 -0.8901 31 1 1.6766 1.9565 0.8899 32 1 1.6767 -1.7489 -1.2492 33 1 1.6768 -0.2074 -2.1392 34 1 3.1300 -0.7208 -1.2494 35 1 2.6963 -2.2040 3.1783 36 1 2.0145 -4.5778 3.4365 37 1 0.5780 -5.6027 1.6849 38 1 -0.1611 -5.4895 -0.6172 39 1 -0.1583 -3.9468 -1.5051 40 1 -2.6711 -4.4810 -2.4430 41 1 -2.6741 -6.0240 -1.5557 42 1 -4.7598 -5.3537 -0.3951 43 1 -4.7576 -3.8104 -1.2821 44 1 -8.2230 -5.0152 -1.6009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358708121.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:58 Heat of formation + Delta-G solvation = -102.245002 kcal Electronic energy + Delta-G solvation = -26242.974606 eV Core-core repulsion = 22480.317404 eV Total energy + Delta-G solvation = -3762.657201 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00423 -39.66191 -37.96352 -37.00644 -35.86420 -35.34396 -33.89924 -33.12112 -32.79335 -29.05260 -28.27627 -28.24887 -27.53262 -24.66144 -23.98031 -23.00174 -21.55145 -19.86657 -18.87149 -18.38110 -17.97967 -17.49973 -17.05904 -16.99234 -16.76780 -16.58443 -16.41178 -15.87933 -15.39843 -15.14649 -15.12072 -14.61726 -14.42450 -13.97153 -13.71282 -13.69302 -13.49051 -13.37788 -13.09675 -13.02423 -13.01097 -12.94013 -12.92691 -12.90865 -12.73197 -12.58704 -12.21727 -12.15667 -12.04135 -11.80099 -11.68306 -11.52435 -11.03787 -10.68326 -10.64601 -10.40686 -9.45685 -8.24774 -6.39207 -1.10870 0.11718 0.27277 1.41926 1.42757 1.56102 1.88895 2.02341 2.38539 2.53763 2.70783 2.98805 3.08569 3.11496 3.57242 3.86127 3.88189 3.98415 4.03857 4.05044 4.07044 4.10768 4.21499 4.29170 4.38694 4.62995 4.68536 4.69663 4.81580 4.82404 4.83466 4.92118 4.96224 4.98923 5.16766 5.18919 5.31395 5.31546 5.39349 5.45016 5.53335 5.70385 6.06898 6.29941 6.74202 6.76003 7.31195 8.87837 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003063 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.274360 B = 9139.190607 C = 9988.736760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.113 3.887 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.308 6.308 6 C 0.305 3.695 7 C -0.189 4.189 8 C -0.035 4.035 9 C -0.199 4.199 10 C 0.133 3.867 11 C -0.544 4.544 12 S 2.399 3.601 13 O -0.976 6.976 14 O -0.977 6.977 15 C -0.573 4.573 16 C 0.020 3.980 17 C -0.538 4.538 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.936 5.936 21 Si 0.976 3.024 22 H -0.252 1.252 23 H -0.279 1.279 24 H -0.280 1.280 25 N -0.531 5.531 26 H 0.046 0.954 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.062 0.938 35 H 0.166 0.834 36 H 0.185 0.815 37 H 0.166 0.834 38 H 0.194 0.806 39 H 0.173 0.827 40 H 0.148 0.852 41 H 0.154 0.846 42 H 0.004 0.996 43 H 0.001 0.999 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.702 4.073 3.090 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.075 3.925 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.216 6.216 6 C 0.126 3.874 7 C -0.210 4.210 8 C -0.060 4.060 9 C -0.221 4.221 10 C -0.003 4.003 11 C -0.673 4.673 12 S 2.588 3.412 13 O -0.974 6.974 14 O -0.974 6.974 15 C -0.704 4.704 16 C -0.018 4.018 17 C -0.577 4.577 18 H 0.099 0.901 19 C -0.205 4.205 20 N -0.576 5.576 21 Si 0.799 3.201 22 H -0.176 1.176 23 H -0.204 1.204 24 H -0.206 1.206 25 N -0.256 5.256 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.097 0.903 34 H 0.081 0.919 35 H 0.184 0.816 36 H 0.202 0.798 37 H 0.183 0.817 38 H 0.211 0.789 39 H 0.191 0.809 40 H 0.166 0.834 41 H 0.172 0.828 42 H 0.022 0.978 43 H 0.019 0.981 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 24.072 5.226 3.335 24.858 hybrid contribution -0.682 -0.833 -0.523 1.197 sum 23.390 4.393 2.812 23.965 Atomic orbital electron populations 1.22627 0.95214 1.04752 1.02175 1.21931 0.93679 0.93252 0.83590 1.21849 1.02336 0.91238 1.03765 1.22536 1.01199 1.03101 0.96880 1.86266 1.70162 1.19601 1.45590 1.20123 0.90859 0.85362 0.91051 1.21542 1.05597 0.95533 0.98362 1.21896 0.92361 0.93376 0.98332 1.22303 1.01215 1.03345 0.95190 1.20018 0.96484 0.89256 0.94590 1.29254 1.17665 1.13005 1.07409 1.08489 0.79090 0.75435 0.78195 1.93498 1.83926 1.32421 1.87507 1.93490 1.83956 1.74226 1.45688 1.30115 1.07615 1.14785 1.17927 1.18816 0.88565 0.96626 0.97824 1.21609 0.91957 1.36746 1.07367 0.90116 1.26171 0.98805 0.96100 0.99449 1.70135 1.06964 1.45686 1.34838 0.85239 0.78469 0.77941 0.78444 1.17552 1.20428 1.20560 1.67223 1.15403 1.12407 1.30532 0.93531 0.90586 0.90315 0.90775 0.88859 0.91799 0.90351 0.90294 0.91945 0.81608 0.79768 0.81659 0.78872 0.80889 0.83379 0.82835 0.97776 0.98061 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.32 8.35 71.98 0.60 -4.72 16 2 C 0.11 2.59 1.11 -10.79 -0.01 2.58 16 3 C -0.13 -2.26 8.84 71.98 0.64 -1.62 16 4 C -0.18 -3.76 8.35 71.98 0.60 -3.16 16 5 O -0.31 -7.80 9.77 -89.96 -0.88 -8.68 16 6 C 0.30 7.90 6.77 84.79 0.57 8.47 16 7 C -0.19 -3.75 10.04 22.47 0.23 -3.53 16 8 C -0.03 -0.59 10.17 22.45 0.23 -0.36 16 9 C -0.20 -4.11 9.73 22.37 0.22 -3.90 16 10 C 0.13 3.35 6.04 42.49 0.26 3.60 16 11 C -0.54 -11.62 6.09 71.24 0.43 -11.18 16 12 S 2.40 82.94 4.70 -56.49 -0.27 82.67 16 13 O -0.98 -41.92 17.97 -127.37 -2.29 -44.21 16 14 O -0.98 -39.87 18.10 -127.37 -2.31 -42.18 16 15 C -0.57 -20.53 5.74 71.98 0.41 -20.11 16 16 C 0.02 1.06 4.98 29.85 0.15 1.21 16 17 C -0.54 -29.68 9.11 25.60 0.23 -29.45 16 18 H 0.08 4.03 7.74 -2.91 -0.02 4.01 16 19 C -0.01 -0.41 5.46 84.65 0.46 0.05 16 20 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 21 Si 0.98 43.18 29.54 68.60 2.03 45.21 16 22 H -0.25 -10.26 7.11 99.48 0.71 -9.55 16 23 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 24 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 25 N -0.53 -14.65 4.49 -296.99 -1.33 -15.99 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.08 2.64 5.46 -2.39 -0.01 2.63 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.08 1.88 5.57 -2.39 -0.01 1.87 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 37 H 0.17 2.62 8.06 -2.91 -0.02 2.59 16 38 H 0.19 2.31 8.08 -2.39 -0.02 2.29 16 39 H 0.17 2.91 8.14 -2.39 -0.02 2.89 16 40 H 0.15 4.45 8.14 -2.39 -0.02 4.43 16 41 H 0.15 4.41 8.14 -2.39 -0.02 4.39 16 42 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 43 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 44 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -83.51 376.99 1.24 -82.28 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.98 Total: 20.47 kcal Atomic # 6 Polarization: -67.14 SS G_CDS: 5.02 Total: -62.12 kcal Atomic # 7 Polarization: -72.38 SS G_CDS: -1.05 Total: -73.43 kcal Atomic # 8 Polarization: -89.60 SS G_CDS: -5.47 Total: -95.07 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 82.94 SS G_CDS: -0.27 Total: 82.67 kcal Total: -83.51 1.24 -82.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358708121.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.969 kcal (2) G-P(sol) polarization free energy of solvation -83.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds