Wall clock time and date at job start Tue Mar 31 2020 15:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99885 * 2 1 4 4 N 1.46507 * 109.46860 * 124.99826 * 3 2 1 5 5 C 1.46497 * 120.00207 * 265.84381 * 4 3 2 6 6 C 1.50700 * 109.47314 * 270.00508 * 5 4 3 7 7 H 1.08000 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00078 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00427 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00022 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47087 * 89.99508 * 10 8 6 12 12 H 1.48497 * 109.46711 * 209.99655 * 10 8 6 13 13 H 1.48502 * 109.46783 * 329.99490 * 10 8 6 14 14 C 1.34774 * 119.99786 * 85.85176 * 4 3 2 15 15 O 1.21769 * 120.00012 * 174.59810 * 14 4 3 16 16 C 1.46138 * 120.00131 * 354.59010 * 14 4 3 17 17 C 1.37839 * 126.03045 * 174.36026 * 16 14 4 18 18 C 1.39893 * 106.68515 * 180.02562 * 17 16 14 19 19 C 1.36112 * 107.17484 * 0.02562 * 18 17 16 20 20 O 1.35356 * 125.58003 * 180.02562 * 19 18 17 21 21 C 1.35884 * 117.99714 * 258.64368 * 20 19 18 22 22 C 1.38767 * 120.05928 * 354.51932 * 21 20 19 23 23 C 1.38135 * 119.94357 * 179.76330 * 22 21 20 24 24 C 1.38277 * 120.05640 * 0.49393 * 23 22 21 25 25 C 1.38271 * 120.11611 * 359.76203 * 24 23 22 26 26 C 1.38142 * 120.06065 * 0.02562 * 25 24 23 27 27 O 1.34032 * 108.83867 * 0.25856 * 19 18 17 28 28 H 1.07993 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00033 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00033 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47015 * 5.00052 * 3 2 1 32 32 H 1.09001 * 109.47184 * 244.99411 * 3 2 1 33 33 H 1.09005 * 109.46469 * 30.00497 * 5 4 3 34 34 H 1.08997 * 109.47096 * 150.00357 * 5 4 3 35 35 H 0.97003 * 120.00759 * 180.02562 * 9 8 6 36 36 H 1.08006 * 126.65614 * 0.02562 * 17 16 14 37 37 H 1.08000 * 126.41270 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02723 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.97144 * 180.23067 * 23 22 21 40 40 H 1.07997 * 119.94205 * 179.73844 * 24 23 22 41 41 H 1.08000 * 119.97279 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.02677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5893 1.9474 2.3979 6 6 2.9570 3.4088 2.3862 7 1 3.4436 3.8363 1.5220 8 6 2.6721 4.2001 3.4787 9 7 2.9933 5.4753 3.4687 10 14 1.8309 3.4605 4.9738 11 1 2.8577 2.9551 5.9199 12 1 1.0092 4.5001 5.6440 13 1 0.9572 2.3387 4.5457 14 6 4.2216 0.7904 1.0073 15 8 5.0293 0.8988 1.9122 16 6 4.5838 0.0729 -0.2133 17 6 5.8298 -0.4319 -0.5176 18 6 5.7226 -1.0350 -1.7753 19 6 4.4349 -0.8785 -2.1876 20 8 3.9233 -1.3242 -3.3588 21 6 3.7595 -0.4268 -4.3660 22 6 4.0048 0.9207 -4.1430 23 6 3.8422 1.8302 -5.1698 24 6 3.4255 1.4004 -6.4163 25 6 3.1752 0.0590 -6.6397 26 6 3.3405 -0.8554 -5.6174 27 8 3.7577 -0.2064 -1.2463 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 1.5114 1.8448 2.5237 34 1 3.1003 1.4508 3.2227 35 1 2.7932 6.0320 4.2375 36 1 6.7167 -0.3733 0.0960 37 1 6.5137 -1.5311 -2.3179 38 1 4.3267 1.2574 -3.1686 39 1 4.0367 2.8786 -4.9978 40 1 3.2949 2.1137 -7.2166 41 1 2.8494 -0.2741 -7.6140 42 1 3.1445 -1.9029 -5.7924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359447786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:02 Heat of formation + Delta-G solvation = 18.489666 kcal Electronic energy + Delta-G solvation = -27475.691435 eV Core-core repulsion = 23582.825730 eV Total energy + Delta-G solvation = -3892.865705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.90134 -40.45785 -39.01524 -37.90750 -35.99785 -33.26823 -33.19273 -32.18273 -31.34996 -30.64410 -29.50208 -27.89845 -25.73720 -24.23824 -23.05326 -22.80813 -21.81073 -21.28970 -20.19388 -19.33069 -19.12014 -17.51629 -17.14253 -16.91716 -16.37984 -15.90895 -15.82018 -15.45621 -14.83278 -14.69923 -14.36078 -14.08381 -13.95604 -13.72375 -13.49284 -13.29951 -13.19709 -13.09220 -12.79946 -12.36588 -12.05896 -11.90633 -11.73071 -11.67647 -11.34426 -11.18718 -10.98445 -10.58051 -10.20999 -10.15094 -9.72100 -9.50949 -9.31482 -9.24223 -8.75621 -8.62894 -8.51920 -7.89745 -6.12507 -4.12334 0.82492 1.03047 1.07249 1.87538 2.24461 2.40050 3.26750 3.30583 3.33701 3.35398 3.48502 3.53855 3.81913 4.36101 4.52084 4.59711 4.67678 4.80483 4.86052 4.98633 5.07226 5.16294 5.20174 5.21844 5.34581 5.49651 5.54018 5.65214 5.68954 5.70726 5.94151 5.97784 6.09347 6.12750 6.18114 6.22695 6.47764 6.54285 6.71833 6.76547 6.82213 6.86428 7.13734 7.18969 7.53302 7.98589 8.37694 8.64003 8.90523 9.46473 11.00590 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003396 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.698469 B = 8242.739522 C = 8576.611993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.159 4.159 3 C 0.136 3.864 4 N -0.574 5.574 5 C 0.217 3.783 6 C -0.532 4.532 7 H 0.076 0.924 8 C 0.075 3.925 9 N -0.895 5.895 10 Si 0.874 3.126 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.588 3.412 15 O -0.509 6.509 16 C -0.035 4.035 17 C -0.126 4.126 18 C -0.185 4.185 19 C 0.147 3.853 20 O -0.204 6.204 21 C 0.104 3.896 22 C -0.181 4.181 23 C -0.080 4.080 24 C -0.147 4.147 25 C -0.086 4.086 26 C -0.138 4.138 27 O -0.161 6.161 28 H 0.099 0.901 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.036 0.964 34 H 0.039 0.961 35 H 0.265 0.735 36 H 0.169 0.831 37 H 0.163 0.837 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.388 -13.114 -19.207 23.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.178 4.178 3 C 0.013 3.987 4 N -0.303 5.303 5 C 0.098 3.902 6 C -0.570 4.570 7 H 0.094 0.906 8 C -0.128 4.128 9 N -0.533 5.533 10 Si 0.701 3.299 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.373 3.627 15 O -0.387 6.387 16 C -0.087 4.087 17 C -0.146 4.146 18 C -0.204 4.204 19 C 0.054 3.946 20 O -0.115 6.115 21 C 0.062 3.938 22 C -0.199 4.199 23 C -0.098 4.098 24 C -0.165 4.165 25 C -0.104 4.104 26 C -0.157 4.157 27 O -0.060 6.060 28 H 0.118 0.882 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.100 0.900 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.187 0.813 37 H 0.181 0.819 38 H 0.147 0.853 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.150 0.850 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.353 -12.958 -18.616 22.685 hybrid contribution -0.403 -0.238 0.732 0.869 sum -0.756 -13.196 -17.884 22.239 Atomic orbital electron populations 1.23812 0.95724 1.01785 1.01073 1.23364 0.96217 0.98860 0.99371 1.20759 0.92973 0.95697 0.89305 1.47888 1.12219 1.55125 1.15030 1.19789 0.95596 0.94370 0.80483 1.21276 1.40287 0.91415 1.04009 0.90565 1.24829 0.95192 0.94682 0.98090 1.69886 1.47139 1.05400 1.30856 0.86882 0.80165 0.79270 0.83625 1.19783 1.20960 1.18961 1.16497 0.83103 0.79329 0.83763 1.90907 1.49019 1.60124 1.38611 1.22892 0.89527 1.06115 0.90211 1.22031 0.97708 0.98691 0.96196 1.21497 0.94069 1.06463 0.98390 1.20002 0.88813 1.01108 0.84646 1.84578 1.79625 1.32005 1.15333 1.19361 0.98263 0.88484 0.87687 1.21402 1.05404 0.92068 1.01048 1.21053 0.96717 0.99711 0.92343 1.21175 1.01867 0.96042 0.97441 1.20983 0.98247 0.92829 0.98380 1.20405 1.04177 1.01048 0.90027 1.84385 1.39655 1.57046 1.24905 0.88242 0.88691 0.87742 0.88729 0.89995 0.94627 0.94303 0.92462 0.81327 0.81939 0.85286 0.85186 0.85536 0.84990 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.48 14.32 29.01 0.42 -2.06 16 2 C -0.16 -2.41 8.74 -36.03 -0.31 -2.72 16 3 C 0.14 2.34 5.43 -5.19 -0.03 2.31 16 4 N -0.57 -12.06 2.45 -178.17 -0.44 -12.49 16 5 C 0.22 5.27 4.17 -5.19 -0.02 5.25 16 6 C -0.53 -15.07 9.94 -34.44 -0.34 -15.41 16 7 H 0.08 2.37 8.06 -52.49 -0.42 1.95 16 8 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 9 N -0.89 -27.26 13.96 55.43 0.77 -26.48 16 10 Si 0.87 21.25 27.47 -169.99 -4.67 16.58 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.59 12.30 7.58 -13.09 -0.10 12.20 16 15 O -0.51 -12.34 16.51 5.13 0.08 -12.26 16 16 C -0.03 -0.58 6.69 -36.56 -0.24 -0.83 16 17 C -0.13 -1.79 10.67 -39.11 -0.42 -2.20 16 18 C -0.18 -2.26 10.89 -39.73 -0.43 -2.69 16 19 C 0.15 2.00 5.86 29.97 0.18 2.18 16 20 O -0.20 -2.62 10.11 -25.13 -0.25 -2.88 16 21 C 0.10 1.23 6.66 -39.19 -0.26 0.97 16 22 C -0.18 -2.15 9.20 -39.42 -0.36 -2.52 16 23 C -0.08 -0.81 10.04 -39.61 -0.40 -1.20 16 24 C -0.15 -1.24 10.04 -39.56 -0.40 -1.64 16 25 C -0.09 -0.70 10.04 -39.60 -0.40 -1.09 16 26 C -0.14 -1.32 9.99 -39.42 -0.39 -1.71 16 27 O -0.16 -2.45 5.58 -19.31 -0.11 -2.56 16 28 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 29 H 0.09 1.09 8.06 -52.49 -0.42 0.67 16 30 H 0.10 1.59 7.33 -52.49 -0.38 1.21 16 31 H 0.09 1.64 7.69 -51.93 -0.40 1.24 16 32 H 0.08 1.34 5.85 -51.93 -0.30 1.04 16 33 H 0.04 0.83 7.13 -51.93 -0.37 0.46 16 34 H 0.04 0.99 6.93 -51.93 -0.36 0.63 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.17 2.19 8.06 -52.48 -0.42 1.77 16 37 H 0.16 1.52 8.06 -52.49 -0.42 1.09 16 38 H 0.13 1.68 6.54 -52.49 -0.34 1.34 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 41 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 LS Contribution 364.64 15.07 5.50 5.50 Total: -1.00 -32.81 364.64 -7.85 -40.67 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.12 Total: 3.05 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -3.62 Total: -9.13 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.34 Total: -38.98 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.28 Total: -17.69 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.81 -7.85 -40.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359447786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.156 kcal (2) G-P(sol) polarization free energy of solvation -32.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds