Wall clock time and date at job start Tue Mar 31 2020 15:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50698 * 119.99885 * 2 1 4 4 N 1.46507 * 109.46860 * 124.99826 * 3 2 1 5 5 C 1.46497 * 120.00207 * 265.84381 * 4 3 2 6 6 C 1.50700 * 109.47314 * 270.00508 * 5 4 3 7 7 H 1.08000 * 120.00265 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00078 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00427 * 179.97438 * 8 6 5 10 10 Si 1.86809 * 120.00022 * 0.02562 * 8 6 5 11 11 H 1.48492 * 109.47087 * 89.99508 * 10 8 6 12 12 H 1.48497 * 109.46711 * 209.99655 * 10 8 6 13 13 H 1.48502 * 109.46783 * 329.99490 * 10 8 6 14 14 C 1.34774 * 119.99786 * 85.85176 * 4 3 2 15 15 O 1.21769 * 120.00012 * 174.59810 * 14 4 3 16 16 C 1.46138 * 120.00131 * 354.59010 * 14 4 3 17 17 C 1.37839 * 126.03045 * 174.36026 * 16 14 4 18 18 C 1.39893 * 106.68515 * 180.02562 * 17 16 14 19 19 C 1.36112 * 107.17484 * 0.02562 * 18 17 16 20 20 O 1.35356 * 125.58003 * 180.02562 * 19 18 17 21 21 C 1.35884 * 117.99714 * 258.64368 * 20 19 18 22 22 C 1.38767 * 120.05928 * 354.51932 * 21 20 19 23 23 C 1.38135 * 119.94357 * 179.76330 * 22 21 20 24 24 C 1.38277 * 120.05640 * 0.49393 * 23 22 21 25 25 C 1.38271 * 120.11611 * 359.76203 * 24 23 22 26 26 C 1.38142 * 120.06065 * 0.02562 * 25 24 23 27 27 O 1.34032 * 108.83867 * 0.25856 * 19 18 17 28 28 H 1.07993 * 120.00096 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00033 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00033 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47015 * 5.00052 * 3 2 1 32 32 H 1.09001 * 109.47184 * 244.99411 * 3 2 1 33 33 H 1.09005 * 109.46469 * 30.00497 * 5 4 3 34 34 H 1.08997 * 109.47096 * 150.00357 * 5 4 3 35 35 H 0.97003 * 120.00759 * 180.02562 * 9 8 6 36 36 H 1.08006 * 126.65614 * 0.02562 * 17 16 14 37 37 H 1.08000 * 126.41270 * 179.97438 * 18 17 16 38 38 H 1.07999 * 120.02723 * 0.02562 * 22 21 20 39 39 H 1.08001 * 119.97144 * 180.23067 * 23 22 21 40 40 H 1.07997 * 119.94205 * 179.73844 * 24 23 22 41 41 H 1.08000 * 119.97279 * 179.97438 * 25 24 23 42 42 H 1.08003 * 120.02677 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5893 1.9474 2.3979 6 6 2.9570 3.4088 2.3862 7 1 3.4436 3.8363 1.5220 8 6 2.6721 4.2001 3.4787 9 7 2.9933 5.4753 3.4687 10 14 1.8309 3.4605 4.9738 11 1 2.8577 2.9551 5.9199 12 1 1.0092 4.5001 5.6440 13 1 0.9572 2.3387 4.5457 14 6 4.2216 0.7904 1.0073 15 8 5.0293 0.8988 1.9122 16 6 4.5838 0.0729 -0.2133 17 6 5.8298 -0.4319 -0.5176 18 6 5.7226 -1.0350 -1.7753 19 6 4.4349 -0.8785 -2.1876 20 8 3.9233 -1.3242 -3.3588 21 6 3.7595 -0.4268 -4.3660 22 6 4.0048 0.9207 -4.1430 23 6 3.8422 1.8302 -5.1698 24 6 3.4255 1.4004 -6.4163 25 6 3.1752 0.0590 -6.6397 26 6 3.3405 -0.8554 -5.6174 27 8 3.7577 -0.2064 -1.2463 28 1 -0.5400 0.9352 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6214 1.4026 -0.9313 33 1 1.5114 1.8448 2.5237 34 1 3.1003 1.4508 3.2227 35 1 2.7932 6.0320 4.2375 36 1 6.7167 -0.3733 0.0960 37 1 6.5137 -1.5311 -2.3179 38 1 4.3267 1.2574 -3.1686 39 1 4.0367 2.8786 -4.9978 40 1 3.2949 2.1137 -7.2166 41 1 2.8494 -0.2741 -7.6140 42 1 3.1445 -1.9029 -5.7924 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359447786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:01 Heat of formation + Delta-G solvation = 0.266730 kcal Electronic energy + Delta-G solvation = -27476.481640 eV Core-core repulsion = 23582.825730 eV Total energy + Delta-G solvation = -3893.655910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.04295 -41.40694 -40.57445 -38.74580 -37.55210 -35.12398 -34.33876 -33.88273 -32.13012 -31.61022 -30.90706 -29.44243 -27.16050 -25.64485 -24.26304 -23.71487 -23.05492 -22.46738 -21.49366 -20.59063 -20.14610 -19.14673 -18.64798 -18.40495 -17.47746 -17.23887 -16.90799 -16.49495 -16.35584 -15.99153 -15.75171 -15.32028 -15.21311 -14.74655 -14.59796 -14.48934 -14.42600 -14.27251 -14.24074 -13.94531 -13.61259 -13.20395 -13.03749 -12.78662 -12.62057 -12.54786 -12.33647 -12.06604 -12.00940 -11.77378 -11.31454 -11.24183 -10.84799 -10.42295 -10.05939 -9.89879 -9.57999 -9.41186 -8.35458 -6.41893 -0.37090 0.26409 0.30692 0.75688 1.10306 1.23667 1.33606 1.36910 1.45492 1.97583 2.11799 2.29949 2.48515 2.73812 2.98341 3.48250 3.60517 3.76946 3.84097 3.95318 4.03344 4.06625 4.20932 4.29861 4.38314 4.39696 4.44592 4.63982 4.68086 4.69620 4.79573 4.83811 4.96919 4.99020 5.10411 5.17846 5.30130 5.39542 5.39961 5.50915 5.56006 5.62773 5.78442 5.79807 6.17938 6.21146 6.37096 6.58870 6.97372 7.22693 8.81358 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.003396 C = 0.003264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.698469 B = 8242.739522 C = 8576.611993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.178 4.178 3 C 0.138 3.862 4 N -0.582 5.582 5 C 0.228 3.772 6 C -0.539 4.539 7 H 0.029 0.971 8 C 0.016 3.984 9 N -0.942 5.942 10 Si 0.946 3.054 11 H -0.273 1.273 12 H -0.274 1.274 13 H -0.238 1.238 14 C 0.584 3.416 15 O -0.558 6.558 16 C -0.069 4.069 17 C -0.106 4.106 18 C -0.175 4.175 19 C 0.156 3.844 20 O -0.207 6.207 21 C 0.080 3.920 22 C -0.202 4.202 23 C -0.094 4.094 24 C -0.142 4.142 25 C -0.079 4.079 26 C -0.138 4.138 27 O -0.166 6.166 28 H 0.106 0.894 29 H 0.120 0.880 30 H 0.103 0.897 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.054 0.946 34 H 0.027 0.973 35 H 0.270 0.730 36 H 0.180 0.820 37 H 0.198 0.802 38 H 0.107 0.893 39 H 0.137 0.863 40 H 0.154 0.846 41 H 0.168 0.832 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.881 -15.433 -21.333 26.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.197 4.197 3 C 0.016 3.984 4 N -0.311 5.311 5 C 0.106 3.894 6 C -0.578 4.578 7 H 0.047 0.953 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.768 3.232 11 H -0.198 1.198 12 H -0.199 1.199 13 H -0.161 1.161 14 C 0.373 3.627 15 O -0.439 6.439 16 C -0.121 4.121 17 C -0.127 4.127 18 C -0.194 4.194 19 C 0.063 3.937 20 O -0.120 6.120 21 C 0.038 3.962 22 C -0.220 4.220 23 C -0.112 4.112 24 C -0.160 4.160 25 C -0.097 4.097 26 C -0.157 4.157 27 O -0.065 6.065 28 H 0.124 0.876 29 H 0.138 0.862 30 H 0.121 0.879 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.079 0.921 36 H 0.197 0.803 37 H 0.215 0.785 38 H 0.125 0.875 39 H 0.154 0.846 40 H 0.172 0.828 41 H 0.186 0.814 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -1.873 -15.294 -20.795 25.881 hybrid contribution 0.069 0.514 1.109 1.224 sum -1.803 -14.780 -19.686 24.683 Atomic orbital electron populations 1.24078 0.94949 1.03298 0.97659 1.23125 0.96764 0.97382 1.02442 1.20845 0.92421 0.97021 0.88076 1.47930 1.13243 1.54882 1.15018 1.19462 0.96206 0.91641 0.82041 1.21460 1.39868 0.93785 1.02677 0.95287 1.25811 0.95900 0.94965 1.01618 1.70038 1.48758 1.07150 1.32227 0.85747 0.79327 0.79314 0.78824 1.19797 1.19856 1.16128 1.16900 0.82373 0.78852 0.84625 1.90851 1.50178 1.62140 1.40722 1.22074 0.90778 1.09018 0.90265 1.22310 0.96904 0.96801 0.96653 1.21818 0.94342 1.05865 0.97363 1.20343 0.89157 0.99578 0.84621 1.84544 1.79973 1.32351 1.15097 1.19607 1.00131 0.88232 0.88183 1.21358 1.07025 0.92864 1.00791 1.21265 0.97137 0.99905 0.92869 1.21555 1.00209 0.97061 0.97199 1.21442 0.96602 0.92270 0.99370 1.20768 1.03202 1.02472 0.89215 1.84322 1.39741 1.57580 1.24879 0.87599 0.86161 0.87924 0.89349 0.89826 0.92791 0.95456 0.92111 0.80311 0.78504 0.87483 0.84555 0.82795 0.81421 0.82944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 14.32 67.78 0.97 -3.00 16 2 C -0.18 -5.29 8.74 25.64 0.22 -5.07 16 3 C 0.14 4.91 5.43 85.63 0.46 5.38 16 4 N -0.58 -25.56 2.45 -835.80 -2.05 -27.61 16 5 C 0.23 11.33 4.17 85.63 0.36 11.69 16 6 C -0.54 -32.05 9.94 25.60 0.25 -31.80 16 7 H 0.03 1.93 8.06 -2.91 -0.02 1.91 16 8 C 0.02 0.92 5.47 84.65 0.46 1.38 16 9 N -0.94 -59.49 13.96 21.45 0.30 -59.19 16 10 Si 0.95 44.14 27.47 68.60 1.88 46.03 16 11 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 14 C 0.58 25.77 7.58 86.29 0.65 26.42 16 15 O -0.56 -28.61 16.51 -4.57 -0.08 -28.68 16 16 C -0.07 -2.41 6.69 24.23 0.16 -2.25 16 17 C -0.11 -3.01 10.67 22.58 0.24 -2.77 16 18 C -0.17 -4.05 10.89 22.18 0.24 -3.81 16 19 C 0.16 4.16 5.86 67.32 0.39 4.55 16 20 O -0.21 -5.12 10.11 -7.51 -0.08 -5.20 16 21 C 0.08 1.80 6.66 22.52 0.15 1.95 16 22 C -0.20 -4.82 9.20 22.37 0.21 -4.62 16 23 C -0.09 -1.81 10.04 22.25 0.22 -1.58 16 24 C -0.14 -2.01 10.04 22.29 0.22 -1.78 16 25 C -0.08 -0.99 10.04 22.25 0.22 -0.77 16 26 C -0.14 -2.27 9.99 22.37 0.22 -2.05 16 27 O -0.17 -5.14 5.58 13.34 0.07 -5.07 16 28 H 0.11 2.46 7.84 -2.91 -0.02 2.44 16 29 H 0.12 2.36 8.06 -2.91 -0.02 2.34 16 30 H 0.10 3.10 7.33 -2.91 -0.02 3.08 16 31 H 0.09 3.17 7.69 -2.39 -0.02 3.15 16 32 H 0.08 2.90 5.85 -2.39 -0.01 2.88 16 33 H 0.05 2.47 7.13 -2.38 -0.02 2.45 16 34 H 0.03 1.42 6.93 -2.39 -0.02 1.41 16 35 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.18 4.63 8.06 -2.91 -0.02 4.61 16 37 H 0.20 3.11 8.06 -2.91 -0.02 3.08 16 38 H 0.11 2.96 6.54 -2.91 -0.02 2.95 16 39 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 40 H 0.15 1.30 8.06 -2.91 -0.02 1.28 16 41 H 0.17 0.90 8.06 -2.91 -0.02 0.88 16 42 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -75.82 364.64 6.71 -69.11 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: 0.98 Total: 18.73 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: 5.68 Total: -8.12 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.75 Total: -86.80 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -0.08 Total: -38.95 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.88 Total: 46.03 kcal Total: -75.82 6.71 -69.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359447786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.375 kcal (2) G-P(sol) polarization free energy of solvation -75.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.108 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds