Wall clock time and date at job start Tue Mar 31 2020 15:40:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 H 1.08995 * 109.47263 * 56.40149 * 3 2 1 5 5 C 1.52997 * 109.47148 * 176.40342 * 3 2 1 6 6 N 1.46505 * 109.46998 * 296.40395 * 3 2 1 7 7 C 1.46501 * 119.99697 * 302.55889 * 6 3 2 8 8 C 1.53001 * 109.47173 * 84.97165 * 7 6 3 9 9 O 1.42901 * 109.47542 * 67.23639 * 8 7 6 10 10 S 1.65599 * 119.99966 * 122.55657 * 6 3 2 11 11 O 1.42101 * 106.39974 * 156.46251 * 10 6 3 12 12 O 1.42097 * 106.40200 * 23.54184 * 10 6 3 13 13 C 1.76193 * 107.21814 * 270.00100 * 10 6 3 14 14 C 1.38638 * 119.75243 * 90.00581 * 13 10 6 15 15 C 1.37614 * 120.25163 * 180.27958 * 14 13 10 16 16 C 1.40713 * 119.74609 * 359.50692 * 15 14 13 17 17 C 1.41395 * 120.24656 * 180.23333 * 16 15 14 18 18 H 1.08003 * 119.99965 * 213.63751 * 17 16 15 19 19 C 1.39945 * 119.99953 * 33.64683 * 17 16 15 20 20 N 1.30819 * 119.99805 * 6.14203 * 19 17 16 21 21 Si 1.86799 * 120.00140 * 186.15076 * 19 17 16 22 22 H 1.48500 * 109.47372 * 59.98862 * 21 19 17 23 23 H 1.48498 * 109.47235 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46803 * 299.99451 * 21 19 17 25 25 C 1.40723 * 119.50805 * 0.48601 * 16 15 14 26 26 C 1.37616 * 119.74371 * 359.74632 * 25 16 15 27 27 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47312 * 300.00716 * 1 2 3 29 29 H 1.09011 * 109.46482 * 60.00131 * 1 2 3 30 30 H 1.08997 * 109.47312 * 239.99284 * 2 1 3 31 31 H 1.09006 * 109.46491 * 119.99391 * 2 1 3 32 32 H 1.09001 * 109.46894 * 174.88882 * 5 3 2 33 33 H 1.08993 * 109.47468 * 294.89483 * 5 3 2 34 34 H 1.09001 * 109.46938 * 54.89250 * 5 3 2 35 35 H 1.09003 * 109.46786 * 204.96816 * 7 6 3 36 36 H 1.08993 * 109.47050 * 324.96766 * 7 6 3 37 37 H 1.08999 * 109.47080 * 187.23914 * 8 7 6 38 38 H 1.09004 * 109.46885 * 307.23973 * 8 7 6 39 39 H 0.96694 * 114.00394 * 180.02562 * 9 8 7 40 40 H 1.08000 * 119.87093 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12605 * 179.71897 * 15 14 13 42 42 H 0.97009 * 120.00191 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.12423 * 179.72811 * 25 16 15 44 44 H 1.08007 * 119.87096 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6251 1.9746 0.8559 5 6 3.5674 1.4434 0.0905 6 7 1.6238 2.1076 -1.2372 7 6 2.0086 1.5476 -2.5351 8 6 1.0003 0.4727 -2.9460 9 8 -0.2652 1.0821 -3.2087 10 16 0.7182 3.4923 -1.1684 11 8 0.9390 4.1774 -2.3937 12 8 0.9700 4.0738 0.1034 13 6 -0.9759 3.0081 -1.1675 14 6 -1.6225 2.7692 0.0354 15 6 -2.9439 2.3849 0.0478 16 6 -3.6417 2.2447 -1.1660 17 6 -5.0009 1.8553 -1.1653 18 1 -5.3880 1.2443 -1.9674 19 6 -5.8447 2.2616 -0.1254 20 7 -5.4094 3.0985 0.7809 21 14 -7.5923 1.6086 -0.0313 22 1 -7.5621 0.1288 0.0884 23 1 -8.2737 2.1871 1.1546 24 1 -8.3303 1.9907 -1.2621 25 6 -2.9752 2.4899 -2.3809 26 6 -1.6522 2.8685 -2.3696 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9361 2.4650 -0.0008 33 1 3.8747 1.0306 1.0513 34 1 3.9794 0.8351 -0.7147 35 1 2.0202 2.3400 -3.2836 36 1 3.0016 1.1046 -2.4596 37 1 1.3539 -0.0325 -3.8448 38 1 0.8938 -0.2528 -2.1394 39 1 -0.9545 0.4584 -3.4748 40 1 -1.0858 2.8803 0.9659 41 1 -3.4443 2.1949 0.9859 42 1 -5.9941 3.3799 1.5020 43 1 -3.5000 2.3811 -3.3186 44 1 -1.1386 3.0569 -3.3009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380276292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:11 Heat of formation + Delta-G solvation = -108.032898 kcal Electronic energy + Delta-G solvation = -28163.516880 eV Core-core repulsion = 24400.608697 eV Total energy + Delta-G solvation = -3762.908183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -38.46139 -37.42488 -36.60704 -35.74429 -35.03026 -33.81762 -32.34325 -30.30035 -29.94699 -29.29560 -28.07137 -25.62818 -23.60518 -22.48857 -21.27225 -21.02028 -20.24418 -18.56448 -17.60737 -17.43980 -17.02614 -16.37654 -15.54768 -15.29168 -14.93288 -14.38305 -14.11164 -14.04864 -13.77757 -13.37192 -13.23124 -13.01032 -12.93821 -12.39450 -12.23516 -12.04143 -11.99921 -11.80796 -11.65060 -11.47372 -11.38516 -11.32064 -11.13760 -11.05176 -10.99292 -10.77902 -10.71594 -10.52657 -10.45992 -10.25812 -9.55875 -9.54631 -9.51210 -9.32626 -8.62800 -7.68575 -7.43925 -6.89704 -4.66959 1.32594 2.42061 2.96805 2.98774 2.99609 3.08112 3.64189 3.79067 4.40524 4.50470 4.74715 4.83390 5.02941 5.15416 5.25648 5.35442 5.41307 5.45457 5.52073 5.52580 5.63806 5.73370 5.79544 5.85459 5.91477 6.11712 6.19584 6.22743 6.27975 6.35693 6.38404 6.55329 6.80214 6.83937 6.88773 6.99361 7.15698 7.22455 7.53578 7.58024 7.78311 7.92316 7.95696 8.16230 8.48421 8.68415 8.80004 10.02099 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.004353 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.260012 B = 6430.888801 C = 6471.020827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.133 4.133 3 C 0.145 3.855 4 H 0.098 0.902 5 C -0.159 4.159 6 N -0.991 5.991 7 C 0.121 3.879 8 C 0.033 3.967 9 O -0.549 6.549 10 S 2.689 3.311 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.760 4.760 14 C -0.017 4.017 15 C -0.174 4.174 16 C 0.149 3.851 17 C -0.453 4.453 18 H 0.081 0.919 19 C 0.072 3.928 20 N -0.787 5.787 21 Si 0.917 3.083 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.246 4.246 26 C 0.047 3.953 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.085 0.915 37 H 0.041 0.959 38 H 0.065 0.935 39 H 0.376 0.624 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.285 0.715 43 H 0.095 0.905 44 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.890 -8.394 -2.351 13.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.172 4.172 3 C 0.039 3.961 4 H 0.116 0.884 5 C -0.218 4.218 6 N -0.825 5.825 7 C -0.005 4.005 8 C -0.046 4.046 9 O -0.355 6.355 10 S 2.791 3.209 11 O -0.975 6.975 12 O -0.979 6.979 13 C -0.857 4.857 14 C -0.037 4.037 15 C -0.194 4.194 16 C 0.146 3.854 17 C -0.482 4.482 18 H 0.099 0.901 19 C -0.147 4.147 20 N -0.412 5.412 21 Si 0.741 3.259 22 H -0.188 1.188 23 H -0.201 1.201 24 H -0.188 1.188 25 C -0.267 4.267 26 C 0.027 3.973 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.223 0.777 40 H 0.114 0.886 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.570 -6.849 -1.939 13.584 hybrid contribution -1.738 -1.344 0.007 2.197 sum 9.832 -8.193 -1.932 12.943 Atomic orbital electron populations 1.22116 0.94362 1.01562 1.04720 1.22031 0.97484 0.95964 1.01675 1.20878 0.94635 0.93935 0.86679 0.88436 1.22129 0.95609 1.02283 1.01767 1.57736 1.69004 1.45665 1.10127 1.21261 0.96826 0.97639 0.84774 1.23093 0.86228 0.96222 0.99057 1.86825 1.20000 1.37614 1.91017 1.01357 0.74673 0.72561 0.72351 1.93449 1.86556 1.71175 1.46316 1.93467 1.86256 1.75137 1.43060 1.29096 1.21274 1.35591 0.99693 1.20222 0.95276 0.94147 0.94052 1.21284 0.92653 1.06747 0.98749 1.17827 0.92176 0.84198 0.91235 1.19755 0.94049 1.28071 1.06322 0.90068 1.26005 1.01484 0.93242 0.93998 1.69779 1.37892 1.23050 1.10456 0.86225 0.80843 0.80075 0.78795 1.18757 1.20149 1.18835 1.21054 0.95442 1.13141 0.97068 1.20035 0.93225 0.89637 0.94451 0.93540 0.92504 0.89261 0.91512 0.91771 0.92235 0.91774 0.92483 0.88681 0.89641 0.94065 0.91710 0.77669 0.88575 0.86471 0.90395 0.88673 0.87208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.41 8.20 37.16 0.30 -2.11 16 2 C -0.13 -1.52 4.86 -26.73 -0.13 -1.65 16 3 C 0.14 1.91 2.63 -67.93 -0.18 1.73 16 4 H 0.10 1.45 6.96 -51.93 -0.36 1.09 16 5 C -0.16 -1.68 9.10 37.16 0.34 -1.34 16 6 N -0.99 -14.87 2.13 -107.30 -0.23 -15.10 16 7 C 0.12 1.51 5.54 -4.04 -0.02 1.49 16 8 C 0.03 0.38 6.25 37.16 0.23 0.61 16 9 O -0.55 -7.67 7.69 -35.23 -0.27 -7.94 16 10 S 2.69 53.61 5.61 -107.50 -0.60 53.00 16 11 O -0.98 -21.63 15.81 -57.17 -0.90 -22.53 16 12 O -0.99 -21.87 15.85 -57.17 -0.91 -22.78 16 13 C -0.76 -16.37 4.32 -39.29 -0.17 -16.54 16 14 C -0.02 -0.38 7.89 -39.66 -0.31 -0.69 16 15 C -0.17 -4.27 8.63 -38.88 -0.34 -4.61 16 16 C 0.15 3.70 5.51 -106.82 -0.59 3.11 16 17 C -0.45 -11.17 9.05 -37.74 -0.34 -11.52 16 18 H 0.08 1.89 7.85 -52.48 -0.41 1.48 16 19 C 0.07 1.71 5.31 -17.34 -0.09 1.61 16 20 N -0.79 -19.60 10.95 55.55 0.61 -18.99 16 21 Si 0.92 17.71 29.56 -169.99 -5.03 12.68 16 22 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 23 H -0.28 -5.26 7.11 56.52 0.40 -4.85 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.25 -5.61 9.80 -38.87 -0.38 -5.99 16 26 C 0.05 1.00 6.42 -39.66 -0.25 0.75 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.88 7.52 -51.93 -0.39 0.49 16 29 H 0.09 1.40 3.68 -51.92 -0.19 1.21 16 30 H 0.07 0.67 5.71 -51.93 -0.30 0.37 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.51 6.99 -51.93 -0.36 0.14 16 35 H 0.09 1.33 6.91 -51.93 -0.36 0.97 16 36 H 0.09 0.81 6.69 -51.93 -0.35 0.46 16 37 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.71 3.64 -51.93 -0.19 0.52 16 39 H 0.38 4.32 9.12 45.56 0.42 4.73 16 40 H 0.10 2.08 7.60 -52.49 -0.40 1.68 16 41 H 0.12 2.99 6.44 -52.49 -0.34 2.65 16 42 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 43 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.11 2.26 6.63 -52.48 -0.35 1.92 16 LS Contribution 345.22 15.07 5.20 5.20 Total: -1.00 -30.14 345.22 -9.31 -39.45 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.25 Total: 12.15 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -1.93 Total: -35.15 kcal Atomic # 7 Polarization: -34.46 SS G_CDS: 0.38 Total: -34.08 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -2.08 Total: -53.25 kcal Atomic # 14 Polarization: 17.71 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.60 Total: 53.00 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -30.14 -9.31 -39.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380276292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.588 kcal (2) G-P(sol) polarization free energy of solvation -30.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds