Wall clock time and date at job start Tue Mar 31 2020 15:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47323 * 2 1 4 4 H 1.08995 * 109.47263 * 56.40149 * 3 2 1 5 5 C 1.52997 * 109.47148 * 176.40342 * 3 2 1 6 6 N 1.46505 * 109.46998 * 296.40395 * 3 2 1 7 7 C 1.46501 * 119.99697 * 302.55889 * 6 3 2 8 8 C 1.53001 * 109.47173 * 84.97165 * 7 6 3 9 9 O 1.42901 * 109.47542 * 67.23639 * 8 7 6 10 10 S 1.65599 * 119.99966 * 122.55657 * 6 3 2 11 11 O 1.42101 * 106.39974 * 156.46251 * 10 6 3 12 12 O 1.42097 * 106.40200 * 23.54184 * 10 6 3 13 13 C 1.76193 * 107.21814 * 270.00100 * 10 6 3 14 14 C 1.38638 * 119.75243 * 90.00581 * 13 10 6 15 15 C 1.37614 * 120.25163 * 180.27958 * 14 13 10 16 16 C 1.40713 * 119.74609 * 359.50692 * 15 14 13 17 17 C 1.41395 * 120.24656 * 180.23333 * 16 15 14 18 18 H 1.08003 * 119.99965 * 213.63751 * 17 16 15 19 19 C 1.39945 * 119.99953 * 33.64683 * 17 16 15 20 20 N 1.30819 * 119.99805 * 6.14203 * 19 17 16 21 21 Si 1.86799 * 120.00140 * 186.15076 * 19 17 16 22 22 H 1.48500 * 109.47372 * 59.98862 * 21 19 17 23 23 H 1.48498 * 109.47235 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.46803 * 299.99451 * 21 19 17 25 25 C 1.40723 * 119.50805 * 0.48601 * 16 15 14 26 26 C 1.37616 * 119.74371 * 359.74632 * 25 16 15 27 27 H 1.08997 * 109.47254 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47312 * 300.00716 * 1 2 3 29 29 H 1.09011 * 109.46482 * 60.00131 * 1 2 3 30 30 H 1.08997 * 109.47312 * 239.99284 * 2 1 3 31 31 H 1.09006 * 109.46491 * 119.99391 * 2 1 3 32 32 H 1.09001 * 109.46894 * 174.88882 * 5 3 2 33 33 H 1.08993 * 109.47468 * 294.89483 * 5 3 2 34 34 H 1.09001 * 109.46938 * 54.89250 * 5 3 2 35 35 H 1.09003 * 109.46786 * 204.96816 * 7 6 3 36 36 H 1.08993 * 109.47050 * 324.96766 * 7 6 3 37 37 H 1.08999 * 109.47080 * 187.23914 * 8 7 6 38 38 H 1.09004 * 109.46885 * 307.23973 * 8 7 6 39 39 H 0.96694 * 114.00394 * 180.02562 * 9 8 7 40 40 H 1.08000 * 119.87093 * 359.97438 * 14 13 10 41 41 H 1.08001 * 120.12605 * 179.71897 * 15 14 13 42 42 H 0.97009 * 120.00191 * 180.02562 * 20 19 17 43 43 H 1.08000 * 120.12423 * 179.72811 * 25 16 15 44 44 H 1.08007 * 119.87096 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6251 1.9746 0.8559 5 6 3.5674 1.4434 0.0905 6 7 1.6238 2.1076 -1.2372 7 6 2.0086 1.5476 -2.5351 8 6 1.0003 0.4727 -2.9460 9 8 -0.2652 1.0821 -3.2087 10 16 0.7182 3.4923 -1.1684 11 8 0.9390 4.1774 -2.3937 12 8 0.9700 4.0738 0.1034 13 6 -0.9759 3.0081 -1.1675 14 6 -1.6225 2.7692 0.0354 15 6 -2.9439 2.3849 0.0478 16 6 -3.6417 2.2447 -1.1660 17 6 -5.0009 1.8553 -1.1653 18 1 -5.3880 1.2443 -1.9674 19 6 -5.8447 2.2616 -0.1254 20 7 -5.4094 3.0985 0.7809 21 14 -7.5923 1.6086 -0.0313 22 1 -7.5621 0.1288 0.0884 23 1 -8.2737 2.1871 1.1546 24 1 -8.3303 1.9907 -1.2621 25 6 -2.9752 2.4899 -2.3809 26 6 -1.6522 2.8685 -2.3696 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.9361 2.4650 -0.0008 33 1 3.8747 1.0306 1.0513 34 1 3.9794 0.8351 -0.7147 35 1 2.0202 2.3400 -3.2836 36 1 3.0016 1.1046 -2.4596 37 1 1.3539 -0.0325 -3.8448 38 1 0.8938 -0.2528 -2.1394 39 1 -0.9545 0.4584 -3.4748 40 1 -1.0858 2.8803 0.9659 41 1 -3.4443 2.1949 0.9859 42 1 -5.9941 3.3799 1.5020 43 1 -3.5000 2.3811 -3.3186 44 1 -1.1386 3.0569 -3.3009 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380276292.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:10 Heat of formation + Delta-G solvation = -128.534001 kcal Electronic energy + Delta-G solvation = -28164.405875 eV Core-core repulsion = 24400.608697 eV Total energy + Delta-G solvation = -3763.797178 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.59519 -39.15569 -38.22980 -36.85438 -36.72714 -35.60909 -33.43731 -31.93676 -31.26396 -30.96340 -29.10961 -27.45093 -24.60383 -23.59616 -22.97283 -22.79405 -21.43159 -19.81802 -19.27464 -18.99934 -18.34586 -17.91329 -17.11972 -16.74968 -16.03194 -15.85919 -15.66473 -15.21923 -15.03894 -14.81990 -14.70355 -14.37726 -14.03039 -13.96002 -13.73083 -13.53336 -13.31453 -13.22336 -13.04703 -13.03504 -12.86127 -12.79321 -12.58532 -12.50373 -12.35954 -12.13055 -11.93913 -11.80575 -11.68202 -11.52782 -11.34781 -11.22955 -11.05931 -10.46698 -9.85068 -9.49789 -9.25222 -8.67437 -6.54884 -0.24039 0.64166 1.24253 1.37912 1.46362 1.50051 2.16374 2.23944 2.68243 3.00458 3.51866 3.59027 3.76417 3.84018 4.19205 4.22420 4.34286 4.38991 4.45527 4.48901 4.61211 4.63907 4.72925 4.78729 4.88667 4.90282 4.99750 5.00619 5.09635 5.16404 5.19040 5.26434 5.34518 5.39152 5.39703 5.52027 5.68967 5.70408 5.75335 5.88381 5.97967 6.07945 6.33681 6.64204 6.83930 6.95503 7.07344 8.26980 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.004353 C = 0.004326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.260012 B = 6430.888801 C = 6471.020827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.123 4.123 3 C 0.136 3.864 4 H 0.073 0.927 5 C -0.155 4.155 6 N -0.980 5.980 7 C 0.112 3.888 8 C 0.032 3.968 9 O -0.576 6.576 10 S 2.707 3.293 11 O -1.005 7.005 12 O -1.014 7.014 13 C -0.761 4.761 14 C -0.015 4.015 15 C -0.193 4.193 16 C 0.125 3.875 17 C -0.484 4.484 18 H 0.087 0.913 19 C 0.031 3.969 20 N -0.826 5.826 21 Si 0.989 3.011 22 H -0.256 1.256 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.253 4.253 26 C 0.056 3.944 27 H 0.054 0.946 28 H 0.031 0.969 29 H 0.072 0.928 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.384 0.616 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.290 0.710 43 H 0.106 0.894 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.426 -10.327 -3.232 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.161 4.161 3 C 0.030 3.970 4 H 0.091 0.909 5 C -0.214 4.214 6 N -0.818 5.818 7 C -0.013 4.013 8 C -0.046 4.046 9 O -0.384 6.384 10 S 2.806 3.194 11 O -0.995 6.995 12 O -1.005 7.005 13 C -0.855 4.855 14 C -0.035 4.035 15 C -0.213 4.213 16 C 0.122 3.878 17 C -0.513 4.513 18 H 0.105 0.895 19 C -0.184 4.184 20 N -0.452 5.452 21 Si 0.809 3.191 22 H -0.180 1.180 23 H -0.196 1.196 24 H -0.183 1.183 25 C -0.273 4.273 26 C 0.037 3.963 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.091 0.909 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.233 0.767 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.101 0.899 43 H 0.124 0.876 44 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 13.088 -8.786 -2.832 16.016 hybrid contribution -2.004 -0.758 0.253 2.157 sum 11.084 -9.545 -2.579 14.853 Atomic orbital electron populations 1.22113 0.96721 1.01498 1.02720 1.21992 0.95140 0.95065 1.03935 1.21131 0.96694 0.94332 0.84794 0.90901 1.22118 0.92937 1.02360 1.03946 1.57351 1.67497 1.44716 1.12192 1.21641 0.99247 0.97671 0.82743 1.23212 0.84935 0.95803 1.00687 1.86737 1.21368 1.39043 1.91242 1.00713 0.74060 0.73360 0.71287 1.93418 1.86547 1.72582 1.46976 1.93430 1.86285 1.76560 1.44214 1.29477 1.23075 1.33838 0.99129 1.20253 0.94689 0.93739 0.94799 1.21194 0.93389 1.08512 0.98234 1.18117 0.92870 0.84958 0.91872 1.20037 0.94490 1.29266 1.07527 0.89482 1.26884 1.05551 0.92872 0.93120 1.69861 1.39623 1.24376 1.11307 0.85137 0.75447 0.79579 0.78902 1.17974 1.19602 1.18293 1.21201 0.95981 1.13250 0.96895 1.20120 0.92698 0.88662 0.94863 0.92646 0.94970 0.90878 0.89014 0.89610 0.93372 0.89861 0.89914 0.90140 0.85516 0.91015 0.91045 0.76685 0.88376 0.88320 0.89943 0.87580 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.76 8.20 71.98 0.59 -4.17 16 2 C -0.12 -2.45 4.86 30.60 0.15 -2.30 16 3 C 0.14 3.29 2.63 44.99 0.12 3.41 16 4 H 0.07 2.14 6.96 -2.39 -0.02 2.12 16 5 C -0.15 -2.72 9.10 71.98 0.66 -2.07 16 6 N -0.98 -27.70 2.13 -493.40 -1.05 -28.75 16 7 C 0.11 2.44 5.54 86.38 0.48 2.92 16 8 C 0.03 0.63 6.25 71.98 0.45 1.08 16 9 O -0.58 -15.29 7.69 -148.98 -1.15 -16.44 16 10 S 2.71 107.51 5.61 -56.49 -0.32 107.19 16 11 O -1.00 -43.73 15.81 -128.00 -2.02 -45.76 16 12 O -1.01 -45.40 15.85 -128.00 -2.03 -47.43 16 13 C -0.76 -33.26 4.32 22.46 0.10 -33.17 16 14 C -0.01 -0.69 7.89 22.22 0.18 -0.52 16 15 C -0.19 -9.94 8.63 22.73 0.20 -9.74 16 16 C 0.12 6.42 5.51 -21.29 -0.12 6.30 16 17 C -0.48 -24.57 9.05 23.46 0.21 -24.35 16 18 H 0.09 4.14 7.85 -2.91 -0.02 4.12 16 19 C 0.03 1.51 5.31 85.26 0.45 1.96 16 20 N -0.83 -42.63 10.95 21.83 0.24 -42.39 16 21 Si 0.99 36.57 29.56 68.60 2.03 38.59 16 22 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 23 H -0.27 -9.69 7.11 99.48 0.71 -8.98 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 25 C -0.25 -11.72 9.80 22.73 0.22 -11.49 16 26 C 0.06 2.44 6.42 22.22 0.14 2.58 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.03 1.01 7.52 -2.39 -0.02 0.99 16 29 H 0.07 2.25 3.68 -2.38 -0.01 2.24 16 30 H 0.09 1.41 5.71 -2.39 -0.01 1.40 16 31 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.04 6.99 -2.39 -0.02 1.02 16 35 H 0.08 2.06 6.91 -2.39 -0.02 2.04 16 36 H 0.13 1.76 6.69 -2.39 -0.02 1.74 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.07 1.32 3.64 -2.38 -0.01 1.31 16 39 H 0.38 8.44 9.12 -74.06 -0.68 7.76 16 40 H 0.10 4.48 7.60 -2.91 -0.02 4.45 16 41 H 0.10 5.37 6.44 -2.91 -0.02 5.35 16 42 H 0.29 13.63 8.30 -92.70 -0.77 12.86 16 43 H 0.11 4.57 8.06 -2.91 -0.02 4.55 16 44 H 0.12 4.96 6.63 -2.91 -0.02 4.94 16 Total: -1.00 -67.57 345.22 -0.12 -67.69 By element: Atomic # 1 Polarization: 36.50 SS G_CDS: 0.36 Total: 36.86 kcal Atomic # 6 Polarization: -73.38 SS G_CDS: 3.82 Total: -69.56 kcal Atomic # 7 Polarization: -70.33 SS G_CDS: -0.81 Total: -71.14 kcal Atomic # 8 Polarization: -104.43 SS G_CDS: -5.20 Total: -109.63 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 16 Polarization: 107.51 SS G_CDS: -0.32 Total: 107.19 kcal Total: -67.57 -0.12 -67.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380276292.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.846 kcal (2) G-P(sol) polarization free energy of solvation -67.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds