Wall clock time and date at job start Tue Mar 31 2020 15:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46832 * 2 1 4 4 H 1.08999 * 109.47440 * 304.99459 * 3 2 1 5 5 C 1.53002 * 109.47185 * 184.99782 * 3 2 1 6 6 N 1.46502 * 109.47288 * 65.00061 * 3 2 1 7 7 C 1.46499 * 119.99825 * 63.09929 * 6 3 2 8 8 C 1.53002 * 109.47324 * 81.40286 * 7 6 3 9 9 O 1.42905 * 109.47051 * 66.58723 * 8 7 6 10 10 S 1.65595 * 119.99782 * 243.10018 * 6 3 2 11 11 O 1.42100 * 106.40277 * 23.53915 * 10 6 3 12 12 O 1.42103 * 106.40270 * 156.45958 * 10 6 3 13 13 C 1.76198 * 107.21947 * 269.99604 * 10 6 3 14 14 C 1.38638 * 119.75128 * 269.73137 * 13 10 6 15 15 C 1.37623 * 120.24744 * 179.72082 * 14 13 10 16 16 C 1.40717 * 119.74147 * 0.56826 * 15 14 13 17 17 C 1.41402 * 120.23910 * 179.67878 * 16 15 14 18 18 H 1.07999 * 119.99903 * 28.11939 * 17 16 15 19 19 C 1.39943 * 119.99970 * 208.10854 * 17 16 15 20 20 N 1.30821 * 119.99771 * 11.21775 * 19 17 16 21 21 Si 1.86800 * 120.00035 * 191.21143 * 19 17 16 22 22 H 1.48503 * 109.46889 * 90.00796 * 21 19 17 23 23 H 1.48500 * 109.47341 * 210.00447 * 21 19 17 24 24 H 1.48498 * 109.47291 * 330.00935 * 21 19 17 25 25 C 1.40710 * 119.51764 * 359.70567 * 16 15 14 26 26 C 1.37619 * 119.74125 * 359.97438 * 25 16 15 27 27 H 1.09004 * 109.47109 * 60.00056 * 1 2 3 28 28 H 1.09001 * 109.46788 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47188 * 299.99729 * 1 2 3 30 30 H 1.08998 * 109.47649 * 240.00020 * 2 1 3 31 31 H 1.09000 * 109.47378 * 119.99540 * 2 1 3 32 32 H 1.08995 * 109.47440 * 308.41739 * 5 3 2 33 33 H 1.09000 * 109.47300 * 68.41548 * 5 3 2 34 34 H 1.09000 * 109.47493 * 188.41372 * 5 3 2 35 35 H 1.09005 * 109.46753 * 201.39912 * 7 6 3 36 36 H 1.08994 * 109.47409 * 321.39821 * 7 6 3 37 37 H 1.09001 * 109.47066 * 186.59016 * 8 7 6 38 38 H 1.09000 * 109.46564 * 306.58785 * 8 7 6 39 39 H 0.96699 * 113.99369 * 179.97438 * 9 8 7 40 40 H 1.07996 * 119.87631 * 359.97334 * 14 13 10 41 41 H 1.07998 * 120.12767 * 180.27467 * 15 14 13 42 42 H 0.97003 * 119.99915 * 179.97438 * 20 19 17 43 43 H 1.07993 * 120.13427 * 179.97438 * 25 16 15 44 44 H 1.08003 * 119.87759 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1257 6 7 1.6524 2.0975 1.2518 7 6 2.1688 1.5999 2.5293 8 6 3.5784 2.1491 2.7583 9 8 3.5144 3.5652 2.9390 10 16 0.6305 3.4003 1.2227 11 8 -0.1080 3.3040 0.0126 12 8 0.0188 3.4592 2.5040 13 6 1.6303 4.8443 1.0820 14 6 2.0771 5.4860 2.2268 15 6 2.8632 6.6113 2.1288 16 6 3.2033 7.1170 0.8604 17 6 4.0048 8.2764 0.7475 18 1 4.7152 8.5195 1.5238 19 6 3.8777 9.1088 -0.3703 20 7 2.8781 8.9443 -1.1980 21 14 5.1354 10.4547 -0.6803 22 1 6.2394 9.9176 -1.5158 23 1 4.4848 11.5867 -1.3879 24 1 5.6819 10.9298 0.6161 25 6 2.7395 6.4608 -0.2947 26 6 1.9600 5.3332 -0.1727 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8900 32 1 3.9923 0.7833 0.6280 33 1 3.8480 1.0948 -1.1184 34 1 3.9404 2.4567 0.0238 35 1 1.5153 1.9279 3.3378 36 1 2.2022 0.5107 2.5082 37 1 4.0078 1.6882 3.6479 38 1 4.2020 1.9209 1.8939 39 1 4.3740 3.9816 3.0899 40 1 1.8105 5.0990 3.1992 41 1 3.2138 7.1071 3.0219 42 1 2.7898 9.5214 -1.9726 43 1 2.9941 6.8405 -1.2730 44 1 1.6025 4.8280 -1.0579 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380276306.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:40:14 Heat of formation + Delta-G solvation = -132.554306 kcal Electronic energy + Delta-G solvation = -27711.831495 eV Core-core repulsion = 23947.859984 eV Total energy + Delta-G solvation = -3763.971511 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.40223 -39.22007 -38.23082 -36.96057 -36.71571 -35.67187 -33.50992 -31.94875 -31.16392 -30.75919 -29.53902 -27.50484 -24.52857 -23.65421 -23.04830 -22.83981 -21.44340 -19.79088 -19.32726 -18.97374 -18.38247 -17.94855 -17.15001 -16.78376 -15.97830 -15.74400 -15.58744 -15.32111 -15.07244 -14.83129 -14.71377 -14.50659 -14.02743 -13.95555 -13.84143 -13.57933 -13.47594 -13.25489 -13.06740 -12.93035 -12.87770 -12.81484 -12.67759 -12.60623 -12.51185 -12.11457 -11.93567 -11.86153 -11.68311 -11.52327 -11.40011 -11.26641 -11.11658 -10.47550 -9.86605 -9.59005 -9.33045 -8.73383 -6.57455 -0.24360 0.61285 1.20715 1.37455 1.45265 1.52018 2.14829 2.22783 2.63570 3.00038 3.51476 3.58013 3.72863 3.85059 4.15291 4.18715 4.33765 4.36971 4.43067 4.45882 4.53646 4.56042 4.69249 4.77751 4.81849 4.88868 4.96175 4.97513 5.04753 5.11978 5.15253 5.23429 5.25261 5.36780 5.39408 5.43559 5.53892 5.65055 5.72199 5.86017 5.95710 6.04950 6.28609 6.60139 6.79578 6.92651 7.07861 8.20351 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019267 B = 0.004061 C = 0.003962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.939434 B = 6892.371973 C = 7064.980892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C 0.137 3.863 4 H 0.074 0.926 5 C -0.158 4.158 6 N -0.979 5.979 7 C 0.111 3.889 8 C 0.037 3.963 9 O -0.580 6.580 10 S 2.709 3.291 11 O -1.007 7.007 12 O -1.007 7.007 13 C -0.773 4.773 14 C 0.052 3.948 15 C -0.257 4.257 16 C 0.120 3.880 17 C -0.477 4.477 18 H 0.089 0.911 19 C 0.031 3.969 20 N -0.816 5.816 21 Si 0.992 3.008 22 H -0.258 1.258 23 H -0.269 1.269 24 H -0.254 1.254 25 C -0.203 4.203 26 C -0.024 4.024 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.029 0.971 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.126 0.874 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.384 0.616 40 H 0.115 0.885 41 H 0.106 0.894 42 H 0.293 0.707 43 H 0.107 0.893 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.480 -15.479 2.560 16.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.161 4.161 3 C 0.031 3.969 4 H 0.092 0.908 5 C -0.217 4.217 6 N -0.817 5.817 7 C -0.013 4.013 8 C -0.042 4.042 9 O -0.388 6.388 10 S 2.808 3.192 11 O -0.998 6.998 12 O -0.998 6.998 13 C -0.867 4.867 14 C 0.033 3.967 15 C -0.277 4.277 16 C 0.116 3.884 17 C -0.505 4.505 18 H 0.107 0.893 19 C -0.185 4.185 20 N -0.441 5.441 21 Si 0.812 3.188 22 H -0.183 1.183 23 H -0.194 1.194 24 H -0.177 1.177 25 C -0.223 4.223 26 C -0.044 4.044 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.048 0.952 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.104 0.896 33 H 0.096 0.904 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.143 0.857 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.233 0.767 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.104 0.896 43 H 0.125 0.875 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.775 -15.579 2.323 16.197 hybrid contribution 1.299 1.542 -0.294 2.037 sum 5.074 -14.037 2.028 15.063 Atomic orbital electron populations 1.21831 0.97009 1.02060 1.00778 1.21865 0.95189 0.94632 1.04376 1.21124 0.96574 0.94775 0.84377 0.90793 1.22308 0.93729 1.02231 1.03395 1.57329 1.66062 1.45630 1.12658 1.21633 0.94765 1.01202 0.83742 1.23158 0.97410 0.82242 1.01363 1.86703 1.35919 1.20711 1.95420 1.00659 0.73723 0.73384 0.71447 1.93435 1.70538 1.87460 1.48327 1.93414 1.75647 1.87685 1.43040 1.29570 1.32310 1.25639 0.99172 1.20069 0.90112 0.91249 0.95318 1.21149 1.08308 1.01954 0.96287 1.18141 0.87763 0.90648 0.91814 1.20142 1.19019 1.05961 1.05380 0.89300 1.26971 0.96818 1.00997 0.93753 1.69875 1.26702 1.35952 1.11547 0.85043 0.77758 0.76283 0.79722 1.18291 1.19405 1.17744 1.21318 1.05176 0.97033 0.98799 1.20364 0.94233 0.95231 0.94598 0.93679 0.90559 0.95204 0.88693 0.89353 0.89639 0.90436 0.93560 0.90325 0.85651 0.91047 0.91157 0.76720 0.86691 0.87592 0.89621 0.87532 0.87865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.59 9.80 71.98 0.71 -2.89 16 2 C -0.12 -2.20 5.38 30.59 0.16 -2.04 16 3 C 0.14 3.36 2.61 44.99 0.12 3.47 16 4 H 0.07 2.18 6.97 -2.39 -0.02 2.16 16 5 C -0.16 -3.14 7.65 71.98 0.55 -2.59 16 6 N -0.98 -28.48 2.18 -493.38 -1.08 -29.55 16 7 C 0.11 2.55 5.71 86.38 0.49 3.05 16 8 C 0.04 0.76 7.05 71.98 0.51 1.27 16 9 O -0.58 -16.35 9.29 -148.98 -1.38 -17.73 16 10 S 2.71 110.03 5.68 -56.49 -0.32 109.71 16 11 O -1.01 -44.97 15.86 -128.00 -2.03 -47.00 16 12 O -1.01 -44.90 15.78 -128.00 -2.02 -46.92 16 13 C -0.77 -35.36 5.56 22.46 0.12 -35.24 16 14 C 0.05 2.39 6.56 22.22 0.15 2.53 16 15 C -0.26 -12.36 9.80 22.73 0.22 -12.13 16 16 C 0.12 6.29 5.56 -21.29 -0.12 6.17 16 17 C -0.48 -24.37 9.07 23.46 0.21 -24.16 16 18 H 0.09 4.26 7.87 -2.91 -0.02 4.24 16 19 C 0.03 1.50 5.25 85.26 0.45 1.95 16 20 N -0.82 -41.69 10.82 21.83 0.24 -41.45 16 21 Si 0.99 36.00 29.57 68.60 2.03 38.03 16 22 H -0.26 -9.00 7.11 99.48 0.71 -8.30 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.25 -8.87 7.11 99.48 0.71 -8.17 16 25 C -0.20 -10.73 8.67 22.73 0.20 -10.53 16 26 C -0.02 -1.18 9.49 22.22 0.21 -0.97 16 27 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.03 0.78 7.75 -2.39 -0.02 0.76 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 1.21 6.63 -2.39 -0.02 1.19 16 32 H 0.08 1.24 6.54 -2.39 -0.02 1.23 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.05 1.17 7.61 -2.39 -0.02 1.15 16 35 H 0.08 2.12 6.86 -2.38 -0.02 2.11 16 36 H 0.13 1.87 6.54 -2.39 -0.02 1.85 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.07 1.31 4.31 -2.39 -0.01 1.30 16 39 H 0.38 8.86 9.12 -74.06 -0.68 8.19 16 40 H 0.12 4.97 6.98 -2.91 -0.02 4.95 16 41 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 42 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 43 H 0.11 5.84 6.19 -2.91 -0.02 5.82 16 44 H 0.10 4.78 7.60 -2.91 -0.02 4.75 16 Total: -1.00 -68.82 356.67 -0.24 -69.06 By element: Atomic # 1 Polarization: 37.61 SS G_CDS: 0.35 Total: 37.95 kcal Atomic # 6 Polarization: -76.09 SS G_CDS: 3.98 Total: -72.10 kcal Atomic # 7 Polarization: -70.16 SS G_CDS: -0.84 Total: -71.00 kcal Atomic # 8 Polarization: -106.22 SS G_CDS: -5.43 Total: -111.65 kcal Atomic # 14 Polarization: 36.00 SS G_CDS: 2.03 Total: 38.03 kcal Atomic # 16 Polarization: 110.03 SS G_CDS: -0.32 Total: 109.71 kcal Total: -68.82 -0.24 -69.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380276306.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.492 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds