Wall clock time and date at job start Tue Mar 31 2020 15:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42895 * 114.00309 * 2 1 4 4 H 1.08999 * 109.46991 * 32.29879 * 3 2 1 5 5 C 1.52993 * 109.47315 * 152.29757 * 3 2 1 6 6 N 1.46500 * 109.47209 * 300.00039 * 5 3 2 7 7 S 1.65600 * 120.00503 * 164.99721 * 6 5 3 8 8 O 1.42093 * 106.40435 * 178.53956 * 7 6 5 9 9 O 1.42093 * 106.40098 * 311.46324 * 7 6 5 10 10 C 1.76202 * 107.21292 * 64.99943 * 7 6 5 11 11 C 1.38634 * 119.75320 * 269.72559 * 10 7 6 12 12 C 1.37620 * 120.24970 * 179.72095 * 11 10 7 13 13 C 1.40712 * 119.74212 * 0.57779 * 12 11 10 14 14 C 1.41397 * 120.24363 * 179.67778 * 13 12 11 15 15 H 1.08001 * 120.00658 * 208.04625 * 14 13 12 16 16 C 1.39952 * 120.00038 * 28.04873 * 14 13 12 17 17 N 1.30827 * 119.99521 * 14.04679 * 16 14 13 18 18 Si 1.86791 * 120.00201 * 194.04576 * 16 14 13 19 19 H 1.48495 * 109.47426 * 89.99991 * 18 16 14 20 20 H 1.48504 * 109.47185 * 210.00139 * 18 16 14 21 21 H 1.48506 * 109.47339 * 329.99826 * 18 16 14 22 22 C 1.40715 * 119.51444 * 359.70348 * 13 12 11 23 23 C 1.37615 * 119.74633 * 359.97438 * 22 13 12 24 24 C 1.53002 * 109.47235 * 272.29861 * 3 2 1 25 25 C 1.52995 * 109.47085 * 176.98157 * 24 3 2 26 26 C 1.52997 * 109.46880 * 296.98350 * 24 3 2 27 27 H 1.09002 * 109.47106 * 175.31942 * 1 2 3 28 28 H 1.08998 * 109.47095 * 295.32237 * 1 2 3 29 29 H 1.09000 * 109.46977 * 55.31966 * 1 2 3 30 30 H 1.09000 * 109.47221 * 59.99622 * 5 3 2 31 31 H 1.09001 * 109.47593 * 180.02562 * 5 3 2 32 32 H 0.97004 * 119.99951 * 345.00160 * 6 5 3 33 33 H 1.08001 * 119.87099 * 359.97438 * 11 10 7 34 34 H 1.07998 * 120.12650 * 180.28031 * 12 11 10 35 35 H 0.96994 * 119.99720 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.12619 * 179.97438 * 22 13 12 37 37 H 1.07993 * 119.87783 * 180.02562 * 23 22 13 38 38 H 1.09005 * 109.46840 * 56.98418 * 24 3 2 39 39 H 1.09001 * 109.46954 * 65.94665 * 25 24 3 40 40 H 1.09002 * 109.47073 * 185.94150 * 25 24 3 41 41 H 1.08998 * 109.47742 * 305.94745 * 25 24 3 42 42 H 1.08996 * 109.47498 * 299.99934 * 26 24 3 43 43 H 1.09005 * 109.47247 * 60.00011 * 26 24 3 44 44 H 1.09004 * 109.46797 * 179.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3646 1.9906 0.5491 5 6 3.3845 1.2518 0.6706 6 7 3.2365 0.7832 2.0507 7 16 4.5641 0.2729 2.8988 8 8 4.1010 -0.0792 4.1952 9 8 5.2597 -0.6298 2.0502 10 6 5.6171 1.6699 3.1090 11 6 6.5900 1.9469 2.1611 12 6 7.4143 3.0386 2.3121 13 6 7.2746 3.8680 3.4402 14 6 8.1203 4.9884 3.6095 15 1 8.3481 5.3481 4.6020 16 6 8.6621 5.6315 2.4908 17 7 8.1833 5.3844 1.2986 18 14 10.0688 6.8426 2.6998 19 1 11.3626 6.1203 2.6016 20 1 9.9959 7.8746 1.6345 21 1 9.9662 7.4958 4.0295 22 6 6.2875 3.5738 4.3990 23 6 5.4700 2.4807 4.2240 24 6 2.1650 1.7948 -1.4413 25 6 2.7172 3.2216 -1.4389 26 6 3.1309 0.8753 -2.1913 27 1 -0.3633 -1.0243 -0.0839 28 1 -0.3633 0.4395 0.9289 29 1 -0.3633 0.5847 -0.8451 30 1 4.0302 0.5665 0.1215 31 1 3.8277 2.2476 0.6710 32 1 2.3607 0.7717 2.4677 33 1 6.6988 1.3058 1.2987 34 1 8.1685 3.2551 1.5701 35 1 8.5591 5.8298 0.5232 36 1 6.1719 4.2035 5.2688 37 1 4.7115 2.2532 4.9583 38 1 1.1935 1.7821 -1.9355 39 1 3.7319 3.2178 -1.0407 40 1 2.7283 3.6087 -2.4579 41 1 2.0851 3.8550 -0.8165 42 1 4.1023 0.8880 -1.6971 43 1 2.7374 -0.1412 -2.1930 44 1 3.2407 1.2238 -3.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381107322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:23 Heat of formation + Delta-G solvation = -123.928978 kcal Electronic energy + Delta-G solvation = -26470.168211 eV Core-core repulsion = 22706.570722 eV Total energy + Delta-G solvation = -3763.597489 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.10581 -37.58015 -36.43897 -35.34920 -35.06994 -34.03045 -33.94451 -30.24371 -29.48094 -28.18851 -27.22849 -26.02912 -25.80017 -23.65186 -21.50816 -21.13844 -19.77942 -18.75527 -17.60448 -17.13107 -16.89703 -16.54674 -16.18736 -15.50576 -15.22650 -14.82375 -14.31534 -14.14980 -13.80841 -13.66913 -13.41167 -13.29701 -13.17043 -12.93352 -12.39797 -12.18057 -12.13238 -11.92883 -11.82698 -11.52606 -11.46631 -11.42532 -11.30393 -11.25170 -11.19372 -11.16147 -10.91077 -10.89316 -10.46758 -10.36876 -9.75696 -9.62020 -9.55317 -9.54801 -8.94927 -7.92902 -7.70735 -7.11157 -4.80390 1.30521 2.24565 2.88785 2.89963 2.92648 2.93567 3.64267 3.67738 3.80045 4.26583 4.55445 4.64782 4.74239 4.93982 5.10311 5.17923 5.22492 5.30430 5.35192 5.38448 5.51896 5.57839 5.65774 5.72519 5.76329 5.90444 5.97129 6.03242 6.06461 6.11939 6.23520 6.30232 6.37158 6.68082 6.72312 6.90845 7.04002 7.11945 7.33765 7.38154 7.42043 7.62334 7.77147 7.97695 8.32446 8.51851 8.64256 9.80925 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003861 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.842959 B = 7249.371978 C = 8619.027448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.374 6.374 3 C 0.088 3.912 4 H 0.066 0.934 5 C 0.122 3.878 6 N -1.121 6.121 7 S 2.696 3.304 8 O -0.987 6.987 9 O -0.983 6.983 10 C -0.784 4.784 11 C -0.018 4.018 12 C -0.177 4.177 13 C 0.142 3.858 14 C -0.440 4.440 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.773 5.773 18 Si 0.918 3.082 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.237 4.237 23 C 0.001 3.999 24 C -0.114 4.114 25 C -0.154 4.154 26 C -0.149 4.149 27 H 0.083 0.917 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.408 0.592 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.288 0.712 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.708 -1.826 -6.596 12.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.292 6.292 3 C 0.028 3.972 4 H 0.084 0.916 5 C -0.005 4.005 6 N -0.877 5.877 7 S 2.794 3.206 8 O -0.978 6.978 9 O -0.973 6.973 10 C -0.880 4.880 11 C -0.039 4.039 12 C -0.198 4.198 13 C 0.138 3.862 14 C -0.467 4.467 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.396 5.396 18 Si 0.741 3.259 19 H -0.189 1.189 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.257 4.257 23 C -0.019 4.019 24 C -0.134 4.134 25 C -0.211 4.211 26 C -0.206 4.206 27 H 0.102 0.898 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.241 0.759 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.099 0.901 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.282 -2.817 -6.671 12.576 hybrid contribution 0.113 1.665 0.039 1.669 sum -10.168 -1.152 -6.631 12.194 Atomic orbital electron populations 1.22782 0.81688 1.02540 0.99787 1.87999 1.19006 1.27315 1.94899 1.22420 0.94648 0.84877 0.95220 0.91554 1.21473 0.96597 1.00978 0.81403 1.55559 1.24507 1.84559 1.23046 1.01171 0.72609 0.74666 0.72174 1.93483 1.81478 1.83631 1.39206 1.93481 1.73307 1.62229 1.68259 1.29246 1.22452 1.27320 1.08992 1.20288 0.93133 0.95385 0.95069 1.21323 1.02307 0.95039 1.01088 1.17863 0.87955 0.90161 0.90227 1.19924 1.22607 1.09864 0.94351 0.89526 1.26091 0.96764 0.97548 0.94496 1.69793 1.34731 1.35179 0.99856 0.86134 0.80704 0.79440 0.79582 1.18858 1.19910 1.18278 1.21094 1.00801 1.00910 1.02909 1.20181 0.96170 0.92262 0.93325 1.21562 1.00132 0.96060 0.95645 1.21919 1.02155 0.94920 1.02091 1.21861 0.99568 0.99655 0.99558 0.89807 0.94132 0.94244 0.89449 0.89835 0.75907 0.87830 0.86036 0.90110 0.88182 0.87767 0.91065 0.91347 0.92332 0.92539 0.91792 0.91931 0.92881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.79 101.05 1.09 1.35 16 2 O -0.37 -4.65 9.67 -35.23 -0.34 -5.00 16 3 C 0.09 1.03 1.98 -26.73 -0.05 0.98 16 4 H 0.07 0.70 7.86 -51.93 -0.41 0.29 16 5 C 0.12 1.76 5.20 -4.05 -0.02 1.74 16 6 N -1.12 -17.51 5.86 -10.62 -0.06 -17.57 16 7 S 2.70 52.94 5.73 -107.50 -0.62 52.33 16 8 O -0.99 -21.24 17.26 -57.18 -0.99 -22.23 16 9 O -0.98 -21.52 16.72 -57.18 -0.96 -22.48 16 10 C -0.78 -17.16 5.97 -39.29 -0.23 -17.40 16 11 C -0.02 -0.42 9.49 -39.66 -0.38 -0.80 16 12 C -0.18 -4.36 8.67 -38.87 -0.34 -4.69 16 13 C 0.14 3.55 5.54 -106.83 -0.59 2.95 16 14 C -0.44 -10.71 9.06 -37.74 -0.34 -11.05 16 15 H 0.09 2.01 7.88 -52.49 -0.41 1.59 16 16 C 0.07 1.64 5.19 -17.34 -0.09 1.55 16 17 N -0.77 -18.04 10.98 55.55 0.61 -17.43 16 18 Si 0.92 16.96 29.58 -169.99 -5.03 11.93 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.27 -4.94 7.11 56.52 0.40 -4.54 16 21 H -0.26 -4.75 7.11 56.52 0.40 -4.34 16 22 C -0.24 -5.55 9.80 -38.87 -0.38 -5.93 16 23 C 0.00 0.02 9.49 -39.66 -0.38 -0.36 16 24 C -0.11 -1.20 2.87 -90.62 -0.26 -1.46 16 25 C -0.15 -1.59 8.75 37.16 0.32 -1.27 16 26 C -0.15 -1.64 8.64 37.16 0.32 -1.32 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.04 0.30 7.56 -51.93 -0.39 -0.09 16 30 H 0.09 1.34 5.98 -51.93 -0.31 1.03 16 31 H 0.08 1.20 6.64 -51.93 -0.34 0.86 16 32 H 0.41 5.49 8.65 -34.47 -0.30 5.19 16 33 H 0.10 2.18 7.59 -52.49 -0.40 1.78 16 34 H 0.12 3.02 6.29 -52.49 -0.33 2.69 16 35 H 0.29 6.04 8.30 -40.82 -0.34 5.70 16 36 H 0.10 2.17 8.06 -52.48 -0.42 1.74 16 37 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 38 H 0.07 0.66 7.58 -51.93 -0.39 0.27 16 39 H 0.07 0.80 6.82 -51.93 -0.35 0.44 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.76 6.37 -51.93 -0.33 0.43 16 43 H 0.06 0.71 7.77 -51.93 -0.40 0.31 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 370.21 15.07 5.58 5.58 Total: -1.00 -29.90 370.21 -9.58 -39.48 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -6.45 Total: 11.08 kcal Atomic # 6 Polarization: -34.37 SS G_CDS: -1.33 Total: -35.70 kcal Atomic # 7 Polarization: -35.55 SS G_CDS: 0.55 Total: -35.00 kcal Atomic # 8 Polarization: -47.42 SS G_CDS: -2.28 Total: -49.70 kcal Atomic # 14 Polarization: 16.96 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.62 Total: 52.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -29.90 -9.58 -39.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381107322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.454 kcal (2) G-P(sol) polarization free energy of solvation -29.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds