Wall clock time and date at job start Tue Mar 31 2020 15:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42895 * 114.00309 * 2 1 4 4 H 1.08999 * 109.46991 * 32.29879 * 3 2 1 5 5 C 1.52993 * 109.47315 * 152.29757 * 3 2 1 6 6 N 1.46500 * 109.47209 * 300.00039 * 5 3 2 7 7 S 1.65600 * 120.00503 * 164.99721 * 6 5 3 8 8 O 1.42093 * 106.40435 * 178.53956 * 7 6 5 9 9 O 1.42093 * 106.40098 * 311.46324 * 7 6 5 10 10 C 1.76202 * 107.21292 * 64.99943 * 7 6 5 11 11 C 1.38634 * 119.75320 * 269.72559 * 10 7 6 12 12 C 1.37620 * 120.24970 * 179.72095 * 11 10 7 13 13 C 1.40712 * 119.74212 * 0.57779 * 12 11 10 14 14 C 1.41397 * 120.24363 * 179.67778 * 13 12 11 15 15 H 1.08001 * 120.00658 * 208.04625 * 14 13 12 16 16 C 1.39952 * 120.00038 * 28.04873 * 14 13 12 17 17 N 1.30827 * 119.99521 * 14.04679 * 16 14 13 18 18 Si 1.86791 * 120.00201 * 194.04576 * 16 14 13 19 19 H 1.48495 * 109.47426 * 89.99991 * 18 16 14 20 20 H 1.48504 * 109.47185 * 210.00139 * 18 16 14 21 21 H 1.48506 * 109.47339 * 329.99826 * 18 16 14 22 22 C 1.40715 * 119.51444 * 359.70348 * 13 12 11 23 23 C 1.37615 * 119.74633 * 359.97438 * 22 13 12 24 24 C 1.53002 * 109.47235 * 272.29861 * 3 2 1 25 25 C 1.52995 * 109.47085 * 176.98157 * 24 3 2 26 26 C 1.52997 * 109.46880 * 296.98350 * 24 3 2 27 27 H 1.09002 * 109.47106 * 175.31942 * 1 2 3 28 28 H 1.08998 * 109.47095 * 295.32237 * 1 2 3 29 29 H 1.09000 * 109.46977 * 55.31966 * 1 2 3 30 30 H 1.09000 * 109.47221 * 59.99622 * 5 3 2 31 31 H 1.09001 * 109.47593 * 180.02562 * 5 3 2 32 32 H 0.97004 * 119.99951 * 345.00160 * 6 5 3 33 33 H 1.08001 * 119.87099 * 359.97438 * 11 10 7 34 34 H 1.07998 * 120.12650 * 180.28031 * 12 11 10 35 35 H 0.96994 * 119.99720 * 180.02562 * 17 16 14 36 36 H 1.08006 * 120.12619 * 179.97438 * 22 13 12 37 37 H 1.07993 * 119.87783 * 180.02562 * 23 22 13 38 38 H 1.09005 * 109.46840 * 56.98418 * 24 3 2 39 39 H 1.09001 * 109.46954 * 65.94665 * 25 24 3 40 40 H 1.09002 * 109.47073 * 185.94150 * 25 24 3 41 41 H 1.08998 * 109.47742 * 305.94745 * 25 24 3 42 42 H 1.08996 * 109.47498 * 299.99934 * 26 24 3 43 43 H 1.09005 * 109.47247 * 60.00011 * 26 24 3 44 44 H 1.09004 * 109.46797 * 179.97438 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0104 1.3054 0.0000 4 1 1.3646 1.9906 0.5491 5 6 3.3845 1.2518 0.6706 6 7 3.2365 0.7832 2.0507 7 16 4.5641 0.2729 2.8988 8 8 4.1010 -0.0792 4.1952 9 8 5.2597 -0.6298 2.0502 10 6 5.6171 1.6699 3.1090 11 6 6.5900 1.9469 2.1611 12 6 7.4143 3.0386 2.3121 13 6 7.2746 3.8680 3.4402 14 6 8.1203 4.9884 3.6095 15 1 8.3481 5.3481 4.6020 16 6 8.6621 5.6315 2.4908 17 7 8.1833 5.3844 1.2986 18 14 10.0688 6.8426 2.6998 19 1 11.3626 6.1203 2.6016 20 1 9.9959 7.8746 1.6345 21 1 9.9662 7.4958 4.0295 22 6 6.2875 3.5738 4.3990 23 6 5.4700 2.4807 4.2240 24 6 2.1650 1.7948 -1.4413 25 6 2.7172 3.2216 -1.4389 26 6 3.1309 0.8753 -2.1913 27 1 -0.3633 -1.0243 -0.0839 28 1 -0.3633 0.4395 0.9289 29 1 -0.3633 0.5847 -0.8451 30 1 4.0302 0.5665 0.1215 31 1 3.8277 2.2476 0.6710 32 1 2.3607 0.7717 2.4677 33 1 6.6988 1.3058 1.2987 34 1 8.1685 3.2551 1.5701 35 1 8.5591 5.8298 0.5232 36 1 6.1719 4.2035 5.2688 37 1 4.7115 2.2532 4.9583 38 1 1.1935 1.7821 -1.9355 39 1 3.7319 3.2178 -1.0407 40 1 2.7283 3.6087 -2.4579 41 1 2.0851 3.8550 -0.8165 42 1 4.1023 0.8880 -1.6971 43 1 2.7374 -0.1412 -2.1930 44 1 3.2407 1.2238 -3.2183 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381107322.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:22 Heat of formation + Delta-G solvation = -143.503492 kcal Electronic energy + Delta-G solvation = -26471.017026 eV Core-core repulsion = 22706.570722 eV Total energy + Delta-G solvation = -3764.446304 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.02514 -39.37991 -38.12972 -36.78021 -36.30588 -35.76146 -35.11802 -32.04618 -31.29796 -29.15249 -28.08168 -27.59911 -26.85668 -24.66793 -23.28761 -22.94719 -20.81060 -20.19922 -19.39932 -18.65463 -18.23398 -17.78536 -17.32688 -17.17894 -16.32022 -16.09408 -15.82526 -15.31798 -15.15768 -14.98654 -14.80631 -14.67710 -14.28152 -14.07997 -13.93446 -13.79810 -13.62384 -13.20824 -13.10983 -13.00767 -12.90076 -12.88252 -12.82891 -12.63112 -12.59743 -12.28185 -12.06696 -11.96178 -11.74294 -11.55498 -11.41441 -11.29737 -11.23019 -10.49212 -10.25421 -9.75025 -9.54389 -8.82866 -6.64143 -0.29988 0.47709 1.05594 1.37510 1.44157 1.51469 2.13274 2.26102 2.55846 2.80152 2.97571 3.52497 3.57028 3.72826 3.88710 4.05678 4.30196 4.32324 4.32855 4.34312 4.48235 4.55254 4.62053 4.67603 4.73494 4.83028 4.87494 4.91801 4.96068 5.03554 5.07412 5.09720 5.12616 5.22006 5.24098 5.44010 5.49178 5.54185 5.58980 5.75943 5.94204 6.16038 6.19100 6.31505 6.50433 6.70160 6.81121 8.12454 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013703 B = 0.003861 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.842959 B = 7249.371978 C = 8619.027448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.397 6.397 3 C 0.092 3.908 4 H 0.083 0.917 5 C 0.114 3.886 6 N -1.105 6.105 7 S 2.725 3.275 8 O -1.002 7.002 9 O -1.004 7.004 10 C -0.792 4.792 11 C -0.021 4.021 12 C -0.199 4.199 13 C 0.114 3.886 14 C -0.470 4.470 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.799 5.799 18 Si 0.990 3.010 19 H -0.262 1.262 20 H -0.264 1.264 21 H -0.255 1.255 22 C -0.253 4.253 23 C -0.003 4.003 24 C -0.108 4.108 25 C -0.153 4.153 26 C -0.150 4.150 27 H 0.092 0.908 28 H 0.049 0.951 29 H 0.054 0.946 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.422 0.578 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.297 0.703 36 H 0.112 0.888 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.063 0.937 42 H 0.047 0.953 43 H 0.056 0.944 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.957 -1.226 -7.099 13.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.316 6.316 3 C 0.032 3.968 4 H 0.101 0.899 5 C -0.012 4.012 6 N -0.866 5.866 7 S 2.821 3.179 8 O -0.993 6.993 9 O -0.994 6.994 10 C -0.885 4.885 11 C -0.041 4.041 12 C -0.219 4.219 13 C 0.111 3.889 14 C -0.497 4.497 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.422 5.422 18 Si 0.810 3.190 19 H -0.186 1.186 20 H -0.188 1.188 21 H -0.179 1.179 22 C -0.274 4.274 23 C -0.023 4.023 24 C -0.128 4.128 25 C -0.211 4.211 26 C -0.208 4.208 27 H 0.111 0.889 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.257 0.743 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.144 0.856 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.539 -2.209 -7.160 13.758 hybrid contribution 0.383 1.387 0.147 1.446 sum -11.156 -0.822 -7.013 13.203 Atomic orbital electron populations 1.22992 0.79867 1.03651 1.00959 1.87965 1.21036 1.27500 1.95089 1.22384 0.93172 0.85305 0.95913 0.89877 1.21640 0.98647 1.00407 0.80495 1.55133 1.23881 1.84190 1.23350 1.00274 0.72511 0.73540 0.71622 1.93455 1.81658 1.83707 1.40483 1.93454 1.74447 1.62757 1.68751 1.29641 1.22752 1.27602 1.08498 1.20452 0.92951 0.95004 0.95657 1.21322 1.03060 0.96158 1.01399 1.18201 0.88908 0.90895 0.90908 1.20199 1.23857 1.10439 0.95237 0.89243 1.26924 0.98666 0.98985 0.93747 1.69824 1.35703 1.36013 1.00697 0.85065 0.77060 0.77117 0.79788 1.18631 1.18787 1.17886 1.21316 1.00920 1.01855 1.03268 1.20466 0.96253 0.91807 0.93753 1.21536 1.00847 0.95616 0.94778 1.21915 1.01122 0.95182 1.02853 1.21863 0.98897 0.99685 1.00306 0.88909 0.93219 0.92723 0.90594 0.90077 0.74256 0.86757 0.87176 0.89160 0.87025 0.85621 0.89084 0.93300 0.91199 0.91802 0.93428 0.92453 0.91589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.79 113.37 1.22 1.55 16 2 O -0.40 -9.09 9.67 -148.98 -1.44 -10.53 16 3 C 0.09 1.99 1.98 30.59 0.06 2.05 16 4 H 0.08 1.53 7.86 -2.39 -0.02 1.51 16 5 C 0.11 3.21 5.20 86.38 0.45 3.66 16 6 N -1.11 -33.21 5.86 -187.50 -1.10 -34.31 16 7 S 2.72 105.12 5.73 -56.49 -0.32 104.80 16 8 O -1.00 -41.89 17.26 -128.00 -2.21 -44.10 16 9 O -1.00 -43.66 16.72 -128.00 -2.14 -45.80 16 10 C -0.79 -34.65 5.97 22.46 0.13 -34.51 16 11 C -0.02 -0.96 9.49 22.22 0.21 -0.75 16 12 C -0.20 -10.11 8.67 22.73 0.20 -9.91 16 13 C 0.11 5.88 5.54 -21.29 -0.12 5.76 16 14 C -0.47 -23.35 9.06 23.46 0.21 -23.14 16 15 H 0.09 4.22 7.88 -2.91 -0.02 4.20 16 16 C 0.04 1.63 5.19 85.26 0.44 2.07 16 17 N -0.80 -37.83 10.98 21.83 0.24 -37.59 16 18 Si 0.99 34.41 29.58 68.60 2.03 36.44 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 20 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 21 H -0.26 -8.65 7.11 99.48 0.71 -7.94 16 22 C -0.25 -12.03 9.80 22.73 0.22 -11.81 16 23 C 0.00 -0.13 9.49 22.22 0.21 0.08 16 24 C -0.11 -2.06 2.87 -10.80 -0.03 -2.09 16 25 C -0.15 -2.96 8.75 71.98 0.63 -2.33 16 26 C -0.15 -3.16 8.64 71.98 0.62 -2.54 16 27 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.05 0.67 7.56 -2.39 -0.02 0.65 16 30 H 0.08 2.33 5.98 -2.39 -0.01 2.31 16 31 H 0.08 2.33 6.64 -2.39 -0.02 2.31 16 32 H 0.42 10.52 8.65 -96.74 -0.84 9.68 16 33 H 0.11 4.93 7.59 -2.91 -0.02 4.91 16 34 H 0.11 5.72 6.29 -2.91 -0.02 5.70 16 35 H 0.30 12.52 8.30 -92.71 -0.77 11.75 16 36 H 0.11 4.87 8.06 -2.91 -0.02 4.85 16 37 H 0.13 4.92 7.60 -2.91 -0.02 4.90 16 38 H 0.09 1.41 7.58 -2.38 -0.02 1.40 16 39 H 0.05 1.13 6.82 -2.39 -0.02 1.11 16 40 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.14 6.37 -2.39 -0.02 1.12 16 43 H 0.06 1.25 7.77 -2.38 -0.02 1.23 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -63.87 370.21 -0.30 -64.17 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.17 Total: 38.82 kcal Atomic # 6 Polarization: -76.36 SS G_CDS: 4.47 Total: -71.90 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -0.86 Total: -71.90 kcal Atomic # 8 Polarization: -94.65 SS G_CDS: -5.79 Total: -100.44 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Atomic # 16 Polarization: 105.12 SS G_CDS: -0.32 Total: 104.80 kcal Total: -63.87 -0.30 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381107322.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.331 kcal (2) G-P(sol) polarization free energy of solvation -63.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds