Wall clock time and date at job start Tue Mar 31 2020 15:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 H 1.09001 * 109.46875 * 304.04636 * 3 2 1 5 5 N 1.46499 * 109.47252 * 64.05078 * 3 2 1 6 6 S 1.65606 * 119.99565 * 234.82692 * 5 3 2 7 7 O 1.42101 * 106.39719 * 175.99071 * 6 5 3 8 8 O 1.42092 * 106.40136 * 308.90909 * 6 5 3 9 9 C 1.76195 * 107.21812 * 62.45330 * 6 5 3 10 10 C 1.38636 * 119.74651 * 272.39686 * 9 6 5 11 11 C 1.37618 * 120.24907 * 179.71966 * 10 9 6 12 12 C 1.40723 * 119.74144 * 0.57706 * 11 10 9 13 13 C 1.41399 * 120.24255 * 179.67784 * 12 11 10 14 14 H 1.07994 * 119.99781 * 28.52871 * 13 12 11 15 15 C 1.39942 * 119.99823 * 208.52605 * 13 12 11 16 16 N 1.30825 * 119.99955 * 10.49514 * 15 13 12 17 17 Si 1.86804 * 120.00122 * 190.49484 * 15 13 12 18 18 H 1.48508 * 109.46718 * 59.99672 * 17 15 13 19 19 H 1.48495 * 109.47376 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47011 * 300.00280 * 17 15 13 21 21 C 1.40715 * 119.51167 * 359.70269 * 12 11 10 22 22 C 1.37620 * 119.74420 * 359.97438 * 21 12 11 23 23 C 1.53001 * 109.46834 * 184.04959 * 3 2 1 24 24 C 1.53002 * 109.47391 * 64.99808 * 23 3 2 25 25 C 1.53003 * 109.46827 * 184.99764 * 23 3 2 26 26 O 1.42899 * 109.47327 * 304.99689 * 23 3 2 27 27 H 1.09001 * 109.47004 * 55.30278 * 1 2 3 28 28 H 1.09003 * 109.46901 * 175.30108 * 1 2 3 29 29 H 1.09004 * 109.47414 * 295.30332 * 1 2 3 30 30 H 1.08998 * 109.47084 * 239.99685 * 2 1 3 31 31 H 1.09005 * 109.46969 * 120.00051 * 2 1 3 32 32 H 0.96995 * 120.00490 * 55.10212 * 5 3 2 33 33 H 1.08000 * 119.87692 * 359.97438 * 10 9 6 34 34 H 1.07998 * 120.13445 * 180.28037 * 11 10 9 35 35 H 0.97009 * 119.99717 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.12547 * 179.97438 * 21 12 11 37 37 H 1.08001 * 119.87525 * 180.02562 * 22 21 12 38 38 H 1.09004 * 109.46989 * 59.99390 * 24 23 3 39 39 H 1.08997 * 109.47594 * 179.97438 * 24 23 3 40 40 H 1.09003 * 109.46950 * 300.00185 * 24 23 3 41 41 H 1.08995 * 109.47311 * 60.00320 * 25 23 3 42 42 H 1.09001 * 109.46780 * 180.02562 * 25 23 3 43 43 H 1.08994 * 109.47201 * 299.99714 * 25 23 3 44 44 H 0.96701 * 113.99916 * 179.97438 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9768 -0.8515 5 7 1.6330 2.1044 1.2419 6 16 0.7823 3.5240 1.1832 7 8 0.4615 3.8554 2.5272 8 8 1.5067 4.3904 0.3208 9 6 -0.7464 3.1830 0.3763 10 6 -0.8268 3.2590 -1.0056 11 6 -2.0142 2.9891 -1.6469 12 6 -3.1524 2.6468 -0.8935 13 6 -4.3795 2.3741 -1.5410 14 1 -4.3834 1.9772 -2.5454 15 6 -5.5887 2.6184 -0.8803 16 7 -5.5959 3.2850 0.2454 17 14 -7.1924 1.9929 -1.6058 18 1 -7.1394 0.5133 -1.7216 19 1 -8.3203 2.3795 -0.7206 20 1 -7.3923 2.5879 -2.9516 21 6 -3.0605 2.5784 0.5090 22 6 -1.8611 2.8459 1.1285 23 6 3.5666 1.4436 -0.1019 24 6 3.9880 0.8653 -1.4542 25 6 4.0850 2.8777 0.0234 26 8 4.1148 0.6455 0.9491 27 1 -0.3633 0.5850 -0.8449 28 1 -0.3633 -1.0242 -0.0842 29 1 -0.3634 0.4392 0.9291 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8651 1.7132 2.0986 33 1 0.0467 3.5271 -1.5814 34 1 -2.0736 3.0445 -2.7238 35 1 -6.4341 3.4540 0.7035 36 1 -3.9279 2.3171 1.0969 37 1 -1.7881 2.7936 2.2047 38 1 3.5698 1.4740 -2.2559 39 1 5.0755 0.8665 -1.5270 40 1 3.6187 -0.1564 -1.5435 41 1 3.7849 3.2897 0.9868 42 1 5.1725 2.8785 -0.0497 43 1 3.6669 3.4864 -0.7783 44 1 5.0807 0.6007 0.9460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394026138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:56 Heat of formation + Delta-G solvation = -129.365223 kcal Electronic energy + Delta-G solvation = -27340.894856 eV Core-core repulsion = 23577.061633 eV Total energy + Delta-G solvation = -3763.833222 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -39.07743 -37.60535 -36.43937 -35.24325 -35.09887 -33.98762 -31.67886 -31.45561 -30.21743 -29.47929 -27.24637 -25.79834 -25.70170 -21.54657 -21.47516 -21.20871 -20.31243 -18.89004 -17.60025 -17.09962 -16.57565 -16.43428 -15.92669 -15.40274 -15.18466 -14.48054 -14.14978 -14.04585 -13.79285 -13.44661 -13.35690 -13.15333 -12.47045 -12.35462 -12.32296 -12.22027 -12.08309 -11.83294 -11.68852 -11.60924 -11.45536 -11.37559 -11.29252 -11.22706 -11.21531 -10.92344 -10.84606 -10.63314 -10.46209 -10.38920 -9.97276 -9.73973 -9.63764 -9.47587 -8.95244 -7.89635 -7.68194 -7.05254 -4.79519 1.28279 2.26296 2.89839 2.90340 2.92702 2.94407 3.68410 3.75051 4.18650 4.29993 4.54680 4.65009 4.86412 4.93667 5.23129 5.25724 5.37796 5.41826 5.51529 5.55493 5.67981 5.79943 5.84771 5.97316 6.02406 6.06963 6.13683 6.17812 6.25444 6.33105 6.41598 6.62261 6.69241 6.73924 6.82026 6.94008 7.04302 7.35027 7.38779 7.44766 7.63904 7.65033 7.78582 7.99215 8.34944 8.53785 8.65811 9.85041 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.003806 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.814349 B = 7355.865398 C = 7920.768702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.125 4.125 3 C 0.178 3.822 4 H 0.097 0.903 5 N -1.112 6.112 6 S 2.687 3.313 7 O -0.987 6.987 8 O -0.984 6.984 9 C -0.777 4.777 10 C -0.002 4.002 11 C -0.234 4.234 12 C 0.143 3.857 13 C -0.440 4.440 14 H 0.085 0.915 15 C 0.071 3.929 16 N -0.775 5.775 17 Si 0.919 3.081 18 H -0.261 1.261 19 H -0.275 1.275 20 H -0.262 1.262 21 C -0.175 4.175 22 C -0.014 4.014 23 C 0.116 3.884 24 C -0.181 4.181 25 C -0.176 4.176 26 O -0.555 6.555 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.413 0.587 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.288 0.712 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.219 -6.406 -1.714 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.164 4.164 3 C 0.069 3.931 4 H 0.115 0.885 5 N -0.867 5.867 6 S 2.786 3.214 7 O -0.977 6.977 8 O -0.974 6.974 9 C -0.873 4.873 10 C -0.022 4.022 11 C -0.254 4.254 12 C 0.139 3.861 13 C -0.468 4.468 14 H 0.103 0.897 15 C -0.150 4.150 16 N -0.398 5.398 17 Si 0.742 3.258 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.187 1.187 21 C -0.196 4.196 22 C -0.034 4.034 23 C 0.074 3.926 24 C -0.239 4.239 25 C -0.234 4.234 26 O -0.360 6.360 27 H 0.083 0.917 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.247 0.753 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 11.694 -5.465 -1.195 12.963 hybrid contribution -0.635 -0.611 -0.425 0.978 sum 11.059 -6.075 -1.620 12.722 Atomic orbital electron populations 1.21846 0.94493 1.01288 1.03610 1.21828 0.96773 0.95335 1.02491 1.20686 0.90785 0.94850 0.86744 0.88470 1.55676 1.72656 1.45040 1.13366 1.01404 0.74170 0.72606 0.73225 1.93495 1.85265 1.82393 1.36576 1.93486 1.72506 1.63049 1.68369 1.29132 1.17792 1.36079 1.04318 1.20111 0.96874 0.93356 0.91847 1.21041 0.94401 1.11861 0.98113 1.17842 0.91820 0.84200 0.92227 1.19872 0.90158 1.35416 1.01347 0.89693 1.26095 1.01982 0.92686 0.94274 1.69788 1.30149 1.26188 1.13674 0.86173 0.79268 0.80412 0.79902 1.18501 1.19965 1.18661 1.21394 0.96464 1.06603 0.95114 1.20258 0.92338 0.93712 0.97135 1.21643 0.94221 0.90152 0.86598 1.22547 1.01586 1.02286 0.97441 1.22479 1.00249 0.96433 1.04238 1.86545 1.24890 1.72168 1.52420 0.91730 0.93364 0.92014 0.91498 0.90974 0.75309 0.88127 0.88305 0.90045 0.85832 0.87948 0.91232 0.92305 0.91304 0.91761 0.92972 0.90374 0.78291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 9.19 37.16 0.34 -1.96 16 2 C -0.13 -1.58 5.19 -26.73 -0.14 -1.72 16 3 C 0.18 2.38 1.63 -67.93 -0.11 2.26 16 4 H 0.10 1.36 7.05 -51.93 -0.37 1.00 16 5 N -1.11 -16.60 3.85 -4.89 -0.02 -16.62 16 6 S 2.69 50.99 5.56 -107.50 -0.60 50.39 16 7 O -0.99 -21.50 17.19 -57.17 -0.98 -22.48 16 8 O -0.98 -19.83 15.49 -57.17 -0.89 -20.72 16 9 C -0.78 -16.37 5.06 -39.29 -0.20 -16.57 16 10 C 0.00 -0.04 8.16 -39.66 -0.32 -0.36 16 11 C -0.23 -5.26 9.80 -38.87 -0.38 -5.64 16 12 C 0.14 3.50 5.56 -106.82 -0.59 2.91 16 13 C -0.44 -10.63 9.07 -37.74 -0.34 -10.97 16 14 H 0.08 1.93 7.87 -52.49 -0.41 1.52 16 15 C 0.07 1.62 5.26 -17.34 -0.09 1.53 16 16 N -0.77 -18.65 10.81 55.55 0.60 -18.04 16 17 Si 0.92 17.11 29.57 -169.99 -5.03 12.08 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 19 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 21 C -0.18 -4.28 8.66 -38.87 -0.34 -4.62 16 22 C -0.01 -0.32 9.24 -39.66 -0.37 -0.69 16 23 C 0.12 1.31 0.86 -90.62 -0.08 1.23 16 24 C -0.18 -1.66 8.57 37.16 0.32 -1.34 16 25 C -0.18 -2.15 7.71 37.16 0.29 -1.86 16 26 O -0.55 -5.83 12.13 -35.23 -0.43 -6.26 16 27 H 0.06 1.05 7.32 -51.93 -0.38 0.67 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.00 7.31 -51.93 -0.38 0.62 16 30 H 0.07 0.74 6.38 -51.93 -0.33 0.41 16 31 H 0.07 0.91 7.70 -51.93 -0.40 0.51 16 32 H 0.41 5.64 8.96 -34.47 -0.31 5.33 16 33 H 0.10 1.88 7.44 -52.49 -0.39 1.49 16 34 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 35 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 36 H 0.12 3.11 6.19 -52.49 -0.32 2.78 16 37 H 0.10 2.21 7.54 -52.49 -0.40 1.82 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.61 6.48 -51.93 -0.34 0.27 16 41 H 0.06 0.89 7.19 -51.93 -0.37 0.51 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.08 1.04 7.76 -51.93 -0.40 0.64 16 44 H 0.37 2.52 9.05 45.56 0.41 2.93 16 LS Contribution 363.03 15.07 5.47 5.47 Total: -1.00 -29.25 363.03 -9.52 -38.77 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -5.64 Total: 15.21 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: -2.01 Total: -37.80 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: 0.58 Total: -34.67 kcal Atomic # 8 Polarization: -47.16 SS G_CDS: -2.30 Total: -49.45 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.03 Total: 12.08 kcal Atomic # 16 Polarization: 50.99 SS G_CDS: -0.60 Total: 50.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.25 -9.52 -38.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394026138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.595 kcal (2) G-P(sol) polarization free energy of solvation -29.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds