Wall clock time and date at job start Tue Mar 31 2020 15:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.47080 * 2 1 4 4 H 1.09001 * 109.46875 * 304.04636 * 3 2 1 5 5 N 1.46499 * 109.47252 * 64.05078 * 3 2 1 6 6 S 1.65606 * 119.99565 * 234.82692 * 5 3 2 7 7 O 1.42101 * 106.39719 * 175.99071 * 6 5 3 8 8 O 1.42092 * 106.40136 * 308.90909 * 6 5 3 9 9 C 1.76195 * 107.21812 * 62.45330 * 6 5 3 10 10 C 1.38636 * 119.74651 * 272.39686 * 9 6 5 11 11 C 1.37618 * 120.24907 * 179.71966 * 10 9 6 12 12 C 1.40723 * 119.74144 * 0.57706 * 11 10 9 13 13 C 1.41399 * 120.24255 * 179.67784 * 12 11 10 14 14 H 1.07994 * 119.99781 * 28.52871 * 13 12 11 15 15 C 1.39942 * 119.99823 * 208.52605 * 13 12 11 16 16 N 1.30825 * 119.99955 * 10.49514 * 15 13 12 17 17 Si 1.86804 * 120.00122 * 190.49484 * 15 13 12 18 18 H 1.48508 * 109.46718 * 59.99672 * 17 15 13 19 19 H 1.48495 * 109.47376 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47011 * 300.00280 * 17 15 13 21 21 C 1.40715 * 119.51167 * 359.70269 * 12 11 10 22 22 C 1.37620 * 119.74420 * 359.97438 * 21 12 11 23 23 C 1.53001 * 109.46834 * 184.04959 * 3 2 1 24 24 C 1.53002 * 109.47391 * 64.99808 * 23 3 2 25 25 C 1.53003 * 109.46827 * 184.99764 * 23 3 2 26 26 O 1.42899 * 109.47327 * 304.99689 * 23 3 2 27 27 H 1.09001 * 109.47004 * 55.30278 * 1 2 3 28 28 H 1.09003 * 109.46901 * 175.30108 * 1 2 3 29 29 H 1.09004 * 109.47414 * 295.30332 * 1 2 3 30 30 H 1.08998 * 109.47084 * 239.99685 * 2 1 3 31 31 H 1.09005 * 109.46969 * 120.00051 * 2 1 3 32 32 H 0.96995 * 120.00490 * 55.10212 * 5 3 2 33 33 H 1.08000 * 119.87692 * 359.97438 * 10 9 6 34 34 H 1.07998 * 120.13445 * 180.28037 * 11 10 9 35 35 H 0.97009 * 119.99717 * 180.02562 * 16 15 13 36 36 H 1.07993 * 120.12547 * 179.97438 * 21 12 11 37 37 H 1.08001 * 119.87525 * 180.02562 * 22 21 12 38 38 H 1.09004 * 109.46989 * 59.99390 * 24 23 3 39 39 H 1.08997 * 109.47594 * 179.97438 * 24 23 3 40 40 H 1.09003 * 109.46950 * 300.00185 * 24 23 3 41 41 H 1.08995 * 109.47311 * 60.00320 * 25 23 3 42 42 H 1.09001 * 109.46780 * 180.02562 * 25 23 3 43 43 H 1.08994 * 109.47201 * 299.99714 * 25 23 3 44 44 H 0.96701 * 113.99916 * 179.97438 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6186 1.9768 -0.8515 5 7 1.6330 2.1044 1.2419 6 16 0.7823 3.5240 1.1832 7 8 0.4615 3.8554 2.5272 8 8 1.5067 4.3904 0.3208 9 6 -0.7464 3.1830 0.3763 10 6 -0.8268 3.2590 -1.0056 11 6 -2.0142 2.9891 -1.6469 12 6 -3.1524 2.6468 -0.8935 13 6 -4.3795 2.3741 -1.5410 14 1 -4.3834 1.9772 -2.5454 15 6 -5.5887 2.6184 -0.8803 16 7 -5.5959 3.2850 0.2454 17 14 -7.1924 1.9929 -1.6058 18 1 -7.1394 0.5133 -1.7216 19 1 -8.3203 2.3795 -0.7206 20 1 -7.3923 2.5879 -2.9516 21 6 -3.0605 2.5784 0.5090 22 6 -1.8611 2.8459 1.1285 23 6 3.5666 1.4436 -0.1019 24 6 3.9880 0.8653 -1.4542 25 6 4.0850 2.8777 0.0234 26 8 4.1148 0.6455 0.9491 27 1 -0.3633 0.5850 -0.8449 28 1 -0.3633 -1.0242 -0.0842 29 1 -0.3634 0.4392 0.9291 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8651 1.7132 2.0986 33 1 0.0467 3.5271 -1.5814 34 1 -2.0736 3.0445 -2.7238 35 1 -6.4341 3.4540 0.7035 36 1 -3.9279 2.3171 1.0969 37 1 -1.7881 2.7936 2.2047 38 1 3.5698 1.4740 -2.2559 39 1 5.0755 0.8665 -1.5270 40 1 3.6187 -0.1564 -1.5435 41 1 3.7849 3.2897 0.9868 42 1 5.1725 2.8785 -0.0497 43 1 3.6669 3.4864 -0.7783 44 1 5.0807 0.6007 0.9460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394026138.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:32:56 Heat of formation + Delta-G solvation = -150.021721 kcal Electronic energy + Delta-G solvation = -27341.790589 eV Core-core repulsion = 23577.061633 eV Total energy + Delta-G solvation = -3764.728955 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.04214 -39.36582 -38.07843 -36.75346 -36.28254 -35.72123 -32.66501 -32.55874 -31.99062 -31.26904 -28.11542 -27.57785 -26.76466 -23.23887 -22.99095 -22.56208 -21.31597 -20.38331 -19.37987 -18.64461 -18.07367 -17.52263 -17.15951 -16.90012 -16.40052 -15.86397 -15.74349 -15.18616 -15.07663 -14.94203 -14.65623 -14.40810 -14.08654 -13.89426 -13.64784 -13.36791 -13.35399 -13.21576 -13.02755 -12.94687 -12.89837 -12.84416 -12.71111 -12.55357 -12.51037 -12.37735 -12.05623 -11.95736 -11.76609 -11.56699 -11.49696 -11.32840 -11.15546 -10.79074 -10.19138 -9.68844 -9.48260 -8.77811 -6.62682 -0.27754 0.51678 1.09310 1.36880 1.44976 1.49953 2.12976 2.28107 2.59328 2.95549 3.37570 3.56076 3.62379 3.68192 3.97219 4.13773 4.22412 4.33051 4.34453 4.40362 4.47520 4.73525 4.77823 4.83161 4.90962 4.92215 4.97994 5.02413 5.09652 5.16041 5.17171 5.24173 5.26711 5.33823 5.47128 5.54973 5.56856 5.61255 5.62885 5.80528 5.97584 6.20062 6.24255 6.54428 6.73434 6.84817 7.02292 8.15471 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.003806 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.814349 B = 7355.865398 C = 7920.768702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C 0.165 3.835 4 H 0.091 0.909 5 N -1.097 6.097 6 S 2.714 3.286 7 O -1.014 7.014 8 O -0.992 6.992 9 C -0.779 4.779 10 C 0.002 3.998 11 C -0.246 4.246 12 C 0.118 3.882 13 C -0.472 4.472 14 H 0.091 0.909 15 C 0.032 3.968 16 N -0.811 5.811 17 Si 0.991 3.009 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.256 1.256 21 C -0.197 4.197 22 C -0.019 4.019 23 C 0.124 3.876 24 C -0.178 4.178 25 C -0.180 4.180 26 O -0.563 6.563 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.422 0.578 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.294 0.706 36 H 0.108 0.892 37 H 0.106 0.894 38 H 0.068 0.932 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.043 0.957 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.389 0.611 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -7.545 -2.719 16.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C 0.058 3.942 4 H 0.109 0.891 5 N -0.856 5.856 6 S 2.810 3.190 7 O -1.005 7.005 8 O -0.982 6.982 9 C -0.872 4.872 10 C -0.018 4.018 11 C -0.266 4.266 12 C 0.115 3.885 13 C -0.499 4.499 14 H 0.109 0.891 15 C -0.186 4.186 16 N -0.435 5.435 17 Si 0.811 3.189 18 H -0.180 1.180 19 H -0.193 1.193 20 H -0.180 1.180 21 C -0.217 4.217 22 C -0.039 4.039 23 C 0.082 3.918 24 C -0.236 4.236 25 C -0.237 4.237 26 O -0.371 6.371 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.258 0.742 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.093 0.907 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 13.364 -6.605 -2.206 15.070 hybrid contribution -0.960 -0.261 -0.054 0.996 sum 12.404 -6.866 -2.261 14.357 Atomic orbital electron populations 1.21826 0.96406 1.01284 1.01728 1.21766 0.94793 0.95029 1.03797 1.20982 0.92911 0.94908 0.85403 0.89126 1.55270 1.71505 1.44140 1.14732 1.00600 0.73319 0.73039 0.72034 1.93455 1.85668 1.83428 1.37938 1.93475 1.72126 1.64034 1.68533 1.29533 1.18739 1.34346 1.04621 1.20375 0.97212 0.92207 0.91977 1.21254 0.94453 1.12058 0.98843 1.18157 0.92979 0.84900 0.92502 1.20171 0.90912 1.36794 1.02067 0.89067 1.26971 1.05094 0.92148 0.94355 1.69853 1.31363 1.27266 1.15041 0.85095 0.74818 0.79819 0.79163 1.17977 1.19307 1.18030 1.21350 0.96622 1.08287 0.95446 1.20369 0.92462 0.93573 0.97524 1.21448 0.92293 0.89988 0.88087 1.22531 1.03078 1.02281 0.95729 1.22511 1.02048 0.96713 1.02474 1.86501 1.26746 1.71722 1.52175 0.93540 0.92504 0.93925 0.89254 0.90461 0.74219 0.85645 0.87024 0.89453 0.87439 0.87593 0.91332 0.90164 0.90740 0.93777 0.90334 0.91785 0.76132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.52 9.19 71.98 0.66 -3.86 16 2 C -0.12 -2.66 5.19 30.59 0.16 -2.50 16 3 C 0.17 4.11 1.63 44.99 0.07 4.19 16 4 H 0.09 2.39 7.05 -2.39 -0.02 2.38 16 5 N -1.10 -31.53 3.85 -169.39 -0.65 -32.18 16 6 S 2.71 101.77 5.56 -56.49 -0.31 101.45 16 7 O -1.01 -44.13 17.19 -128.00 -2.20 -46.33 16 8 O -0.99 -39.03 15.49 -128.00 -1.98 -41.02 16 9 C -0.78 -33.03 5.06 22.46 0.11 -32.92 16 10 C 0.00 0.08 8.16 22.22 0.18 0.27 16 11 C -0.25 -11.21 9.80 22.73 0.22 -10.98 16 12 C 0.12 5.98 5.56 -21.29 -0.12 5.86 16 13 C -0.47 -23.38 9.07 23.46 0.21 -23.16 16 14 H 0.09 4.22 7.87 -2.91 -0.02 4.20 16 15 C 0.03 1.49 5.26 85.26 0.45 1.94 16 16 N -0.81 -40.30 10.81 21.83 0.24 -40.06 16 17 Si 0.99 35.14 29.57 68.60 2.03 37.17 16 18 H -0.26 -8.78 7.11 99.48 0.71 -8.07 16 19 H -0.27 -9.14 7.11 99.48 0.71 -8.44 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 21 C -0.20 -10.03 8.66 22.73 0.20 -9.83 16 22 C -0.02 -0.90 9.24 22.22 0.21 -0.69 16 23 C 0.12 2.44 0.86 -10.79 -0.01 2.44 16 24 C -0.18 -2.63 8.57 71.98 0.62 -2.01 16 25 C -0.18 -3.96 7.71 71.98 0.56 -3.41 16 26 O -0.56 -9.96 12.13 -148.98 -1.81 -11.76 16 27 H 0.05 1.51 7.32 -2.39 -0.02 1.49 16 28 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.38 7.31 -2.38 -0.02 1.36 16 30 H 0.09 1.71 6.38 -2.39 -0.02 1.69 16 31 H 0.08 1.75 7.70 -2.38 -0.02 1.73 16 32 H 0.42 10.97 8.96 -96.75 -0.87 10.11 16 33 H 0.13 4.54 7.44 -2.91 -0.02 4.52 16 34 H 0.11 4.67 8.06 -2.91 -0.02 4.65 16 35 H 0.29 13.22 8.30 -92.70 -0.77 12.45 16 36 H 0.11 5.73 6.19 -2.91 -0.02 5.71 16 37 H 0.11 4.75 7.54 -2.91 -0.02 4.73 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 1.03 6.48 -2.39 -0.02 1.02 16 41 H 0.04 1.14 7.19 -2.39 -0.02 1.12 16 42 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.06 1.59 7.76 -2.39 -0.02 1.57 16 44 H 0.39 3.79 9.05 -74.06 -0.67 3.12 16 Total: -1.00 -63.85 363.03 -1.68 -65.53 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.51 Total: 41.89 kcal Atomic # 6 Polarization: -78.20 SS G_CDS: 3.52 Total: -74.68 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.42 Total: -72.24 kcal Atomic # 8 Polarization: -93.12 SS G_CDS: -5.99 Total: -99.11 kcal Atomic # 14 Polarization: 35.14 SS G_CDS: 2.03 Total: 37.17 kcal Atomic # 16 Polarization: 101.77 SS G_CDS: -0.31 Total: 101.45 kcal Total: -63.85 -1.68 -65.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394026138.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.492 kcal (2) G-P(sol) polarization free energy of solvation -63.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds