Wall clock time and date at job start Tue Mar 31 2020 15:33:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47266 * 2 1 4 4 H 1.09004 * 109.46555 * 54.43272 * 3 2 1 5 5 N 1.46498 * 109.47213 * 294.43624 * 3 2 1 6 6 S 1.65600 * 119.99857 * 117.79987 * 5 3 2 7 7 O 1.42106 * 106.40161 * 178.13392 * 6 5 3 8 8 O 1.42101 * 106.40161 * 311.05042 * 6 5 3 9 9 C 1.76198 * 107.22221 * 64.59322 * 6 5 3 10 10 C 1.38628 * 119.75029 * 269.72882 * 9 6 5 11 11 C 1.37625 * 120.25084 * 179.72036 * 10 9 6 12 12 C 1.40715 * 119.74107 * 0.56982 * 11 10 9 13 13 C 1.41391 * 120.24184 * 179.68249 * 12 11 10 14 14 H 1.08008 * 119.99688 * 155.77902 * 13 12 11 15 15 C 1.39944 * 120.00461 * 335.78128 * 13 12 11 16 16 N 1.30828 * 119.99577 * 335.13658 * 15 13 12 17 17 Si 1.86794 * 120.00381 * 155.14006 * 15 13 12 18 18 H 1.48492 * 109.47389 * 94.98255 * 17 15 13 19 19 H 1.48502 * 109.47095 * 214.98234 * 17 15 13 20 20 H 1.48501 * 109.47132 * 334.97797 * 17 15 13 21 21 C 1.40717 * 119.51332 * 359.70405 * 12 11 10 22 22 C 1.37621 * 119.74406 * 359.97438 * 21 12 11 23 23 C 1.52995 * 109.47284 * 174.42825 * 3 2 1 24 24 C 1.53008 * 109.47159 * 180.02562 * 23 3 2 25 25 C 1.52999 * 109.47551 * 300.00440 * 23 3 2 26 26 O 1.42903 * 109.46977 * 60.00731 * 23 3 2 27 27 H 1.09008 * 109.46973 * 186.39884 * 1 2 3 28 28 H 1.08998 * 109.47424 * 66.40557 * 1 2 3 29 29 H 1.08995 * 109.47569 * 306.40046 * 1 2 3 30 30 H 1.09000 * 109.47146 * 120.00433 * 2 1 3 31 31 H 1.09002 * 109.47081 * 240.00253 * 2 1 3 32 32 H 0.97000 * 119.99978 * 297.79566 * 5 3 2 33 33 H 1.08006 * 119.87342 * 359.97438 * 10 9 6 34 34 H 1.07993 * 120.12883 * 180.27273 * 11 10 9 35 35 H 0.96994 * 120.00201 * 179.97438 * 16 15 13 36 36 H 1.08000 * 120.12702 * 179.97438 * 21 12 11 37 37 H 1.07994 * 119.87852 * 179.97438 * 22 21 12 38 38 H 1.08997 * 109.46490 * 60.00818 * 24 23 3 39 39 H 1.08997 * 109.47066 * 180.02562 * 24 23 3 40 40 H 1.08993 * 109.47159 * 300.00900 * 24 23 3 41 41 H 1.08998 * 109.47072 * 60.00159 * 25 23 3 42 42 H 1.09002 * 109.46638 * 179.97438 * 25 23 3 43 43 H 1.08990 * 109.47110 * 299.99597 * 25 23 3 44 44 H 0.96703 * 114.00102 * 59.99213 * 26 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5975 1.9842 0.8360 5 7 1.6641 2.0933 -1.2575 6 16 0.6599 3.4100 -1.2403 7 8 0.5251 3.8294 -2.5914 8 8 -0.4471 3.0597 -0.4212 9 6 1.5108 4.7041 -0.4002 10 6 1.3703 4.8422 0.9721 11 6 2.0347 5.8457 1.6395 12 6 2.8494 6.7409 0.9219 13 6 3.5315 7.7799 1.5961 14 1 4.4250 8.2075 1.1655 15 6 3.0489 8.2542 2.8211 16 7 1.7811 8.1275 3.1179 17 14 4.2149 9.0683 4.0322 18 1 4.1712 10.5411 3.8479 19 1 3.8036 8.7306 5.4186 20 1 5.5969 8.5803 3.7932 21 6 2.9800 6.5947 -0.4715 22 6 2.3116 5.5797 -1.1172 23 6 3.5635 1.4447 0.1400 24 6 4.0735 2.8873 0.1407 25 6 3.9561 0.7650 1.4533 26 8 4.1436 0.7345 -0.9559 27 1 -0.3633 -1.0213 0.1145 28 1 -0.3634 0.4113 -0.9417 29 1 -0.3634 0.6098 0.8271 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0035 1.7531 -2.1001 33 1 0.7403 4.1570 1.5200 34 1 1.9273 5.9488 2.7092 35 1 1.4466 8.4558 3.9671 36 1 3.6024 7.2764 -1.0321 37 1 2.4099 5.4658 -2.1866 38 1 3.6310 3.4286 0.9769 39 1 5.1589 2.8889 0.2400 40 1 3.7938 3.3719 -0.7946 41 1 3.5928 -0.2627 1.4533 42 1 5.0416 0.7663 1.5527 43 1 3.5137 1.3067 2.2892 44 1 3.9361 1.1105 -1.8223 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394026140.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:00 Heat of formation + Delta-G solvation = -130.606662 kcal Electronic energy + Delta-G solvation = -27582.985625 eV Core-core repulsion = 23819.098570 eV Total energy + Delta-G solvation = -3763.887055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.18427 -37.62862 -36.51788 -35.17453 -34.89156 -34.11301 -31.91430 -31.59478 -30.31805 -29.54388 -27.07753 -25.86439 -25.66533 -21.70809 -21.52823 -21.17699 -20.14939 -19.06569 -17.67088 -17.39353 -16.97084 -16.49778 -15.55167 -15.50532 -14.81867 -14.60094 -14.23899 -14.21209 -14.03574 -13.48645 -13.22303 -12.73671 -12.50437 -12.40813 -12.26375 -12.24244 -12.13677 -11.78723 -11.72019 -11.59433 -11.49261 -11.48075 -11.35228 -11.32168 -11.28255 -11.13820 -10.88182 -10.65421 -10.54199 -10.39082 -10.23551 -9.77500 -9.56846 -9.46883 -8.94386 -8.01798 -7.75000 -7.25774 -4.83032 1.21432 2.22145 2.82022 2.85786 2.87370 2.93279 3.61349 3.66636 4.15614 4.26572 4.47707 4.75981 4.93731 5.02204 5.15321 5.23860 5.31614 5.40390 5.46281 5.67533 5.78263 5.84384 5.92978 6.01275 6.03720 6.04528 6.06325 6.14503 6.19749 6.26235 6.49203 6.52268 6.62896 6.64446 6.66321 6.82538 7.00057 7.21364 7.29372 7.38273 7.56276 7.70548 7.70999 7.91753 8.25440 8.45726 8.59748 9.68162 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015230 B = 0.004427 C = 0.003997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.979234 B = 6323.714269 C = 7004.276738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.135 3.865 4 H 0.097 0.903 5 N -1.120 6.120 6 S 2.688 3.312 7 O -0.988 6.988 8 O -0.979 6.979 9 C -0.788 4.788 10 C -0.012 4.012 11 C -0.186 4.186 12 C 0.143 3.857 13 C -0.438 4.438 14 H 0.088 0.912 15 C 0.078 3.922 16 N -0.755 5.755 17 Si 0.910 3.090 18 H -0.266 1.266 19 H -0.270 1.270 20 H -0.255 1.255 21 C -0.238 4.238 22 C 0.006 3.994 23 C 0.120 3.880 24 C -0.179 4.179 25 C -0.141 4.141 26 O -0.558 6.558 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.406 0.594 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.291 0.709 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.360 -10.594 -0.993 11.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.027 3.973 4 H 0.115 0.885 5 N -0.875 5.875 6 S 2.787 3.213 7 O -0.979 6.979 8 O -0.969 6.969 9 C -0.884 4.884 10 C -0.032 4.032 11 C -0.206 4.206 12 C 0.139 3.861 13 C -0.464 4.464 14 H 0.106 0.894 15 C -0.146 4.146 16 N -0.376 5.376 17 Si 0.733 3.267 18 H -0.191 1.191 19 H -0.195 1.195 20 H -0.179 1.179 21 C -0.258 4.258 22 C -0.014 4.014 23 C 0.078 3.922 24 C -0.236 4.236 25 C -0.199 4.199 26 O -0.364 6.364 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.239 0.761 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.096 0.904 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.083 0.917 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.434 -10.853 -0.544 11.136 hybrid contribution 0.864 1.156 0.137 1.450 sum 3.299 -9.697 -0.407 10.250 Atomic orbital electron populations 1.21781 0.95232 1.00905 1.02995 1.21863 0.96340 0.95750 1.02772 1.21422 0.95033 0.94490 0.86349 0.88476 1.55860 1.69802 1.48565 1.13289 1.01393 0.73722 0.72944 0.73211 1.93493 1.86275 1.82049 1.36084 1.93500 1.49520 1.83632 1.70244 1.29034 1.29665 1.23902 1.05779 1.20172 0.94806 0.96600 0.91637 1.21147 1.03492 0.96781 0.99223 1.17772 0.87537 0.89867 0.90878 1.19921 1.09438 1.14615 1.02456 0.89359 1.26127 0.95167 0.94705 0.98646 1.69856 1.13820 1.31393 1.22520 0.86250 0.81563 0.79798 0.79121 1.19071 1.19503 1.17863 1.20974 1.08071 1.02369 0.94396 1.20102 0.91941 0.92568 0.96808 1.21582 0.90875 0.92131 0.87611 1.22546 1.01365 0.95163 1.04536 1.21819 1.02390 1.00948 0.94723 1.86498 1.76181 1.56990 1.16725 0.93280 0.92795 0.91819 0.90877 0.91248 0.76125 0.88125 0.86938 0.89808 0.88375 0.88074 0.90361 0.92451 0.91472 0.91663 0.91783 0.90840 0.78177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.23 37.16 0.34 -1.56 16 2 C -0.13 -1.47 5.18 -26.74 -0.14 -1.60 16 3 C 0.14 1.73 1.64 -67.94 -0.11 1.62 16 4 H 0.10 1.36 7.58 -51.93 -0.39 0.97 16 5 N -1.12 -15.07 4.07 -4.90 -0.02 -15.09 16 6 S 2.69 48.81 5.59 -107.50 -0.60 48.21 16 7 O -0.99 -20.32 17.26 -57.17 -0.99 -21.30 16 8 O -0.98 -19.80 16.30 -57.17 -0.93 -20.73 16 9 C -0.79 -15.98 4.41 -39.29 -0.17 -16.16 16 10 C -0.01 -0.25 8.38 -39.66 -0.33 -0.59 16 11 C -0.19 -4.34 8.73 -38.87 -0.34 -4.68 16 12 C 0.14 3.42 5.56 -106.83 -0.59 2.83 16 13 C -0.44 -10.32 9.01 -37.74 -0.34 -10.66 16 14 H 0.09 1.98 7.96 -52.48 -0.42 1.56 16 15 C 0.08 1.73 4.97 -17.34 -0.09 1.64 16 16 N -0.75 -17.55 11.40 55.55 0.63 -16.92 16 17 Si 0.91 16.43 29.63 -169.99 -5.04 11.40 16 18 H -0.27 -4.76 7.11 56.52 0.40 -4.36 16 19 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 20 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 21 C -0.24 -5.32 9.80 -38.87 -0.38 -5.70 16 22 C 0.01 0.12 8.73 -39.66 -0.35 -0.22 16 23 C 0.12 1.48 0.89 -90.62 -0.08 1.40 16 24 C -0.18 -2.56 7.83 37.16 0.29 -2.27 16 25 C -0.14 -1.58 8.50 37.16 0.32 -1.27 16 26 O -0.56 -6.63 12.41 -35.23 -0.44 -7.06 16 27 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 28 H 0.05 0.73 7.87 -51.93 -0.41 0.32 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.75 6.15 -51.93 -0.32 0.43 16 31 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 32 H 0.41 4.40 7.86 -34.47 -0.27 4.13 16 33 H 0.10 2.00 7.59 -52.48 -0.40 1.60 16 34 H 0.11 2.68 6.41 -52.49 -0.34 2.34 16 35 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 36 H 0.10 2.06 8.06 -52.49 -0.42 1.64 16 37 H 0.10 1.94 7.60 -52.49 -0.40 1.55 16 38 H 0.08 1.26 7.03 -51.93 -0.36 0.89 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.99 6.17 -51.93 -0.32 0.67 16 41 H 0.06 0.66 6.31 -51.93 -0.33 0.33 16 42 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.37 3.51 7.78 45.56 0.35 3.86 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -28.67 362.03 -9.58 -38.25 By element: Atomic # 1 Polarization: 20.68 SS G_CDS: -5.68 Total: 15.00 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: -1.97 Total: -37.20 kcal Atomic # 7 Polarization: -32.62 SS G_CDS: 0.61 Total: -32.01 kcal Atomic # 8 Polarization: -46.74 SS G_CDS: -2.36 Total: -49.09 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.04 Total: 11.40 kcal Atomic # 16 Polarization: 48.81 SS G_CDS: -0.60 Total: 48.21 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -28.67 -9.58 -38.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394026140.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.361 kcal (2) G-P(sol) polarization free energy of solvation -28.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds