Wall clock time and date at job start Tue Mar 31 2020 15:04:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47087 * 2 1 4 4 C 1.52997 * 109.47034 * 120.00389 * 2 1 3 5 5 H 1.09000 * 109.47084 * 184.91585 * 4 2 1 6 6 C 1.52997 * 109.47196 * 64.91511 * 4 2 1 7 7 O 1.42899 * 109.47285 * 65.47789 * 6 4 2 8 8 C 1.53005 * 109.47045 * 304.91764 * 4 2 1 9 9 N 1.46500 * 109.46940 * 185.00331 * 8 4 2 10 10 S 1.65600 * 119.99588 * 164.72526 * 9 8 4 11 11 O 1.42102 * 106.40120 * 178.81404 * 10 9 8 12 12 O 1.42097 * 106.40365 * 311.72937 * 10 9 8 13 13 C 1.76202 * 107.22173 * 65.27544 * 10 9 8 14 14 C 1.38643 * 119.74404 * 269.72814 * 13 10 9 15 15 C 1.37617 * 120.24544 * 179.72027 * 14 13 10 16 16 C 1.40718 * 119.74321 * 0.56982 * 15 14 13 17 17 C 1.41393 * 120.24285 * 179.68287 * 16 15 14 18 18 H 1.07997 * 119.99874 * 203.84862 * 17 16 15 19 19 C 1.39942 * 119.99898 * 23.84789 * 17 16 15 20 20 N 1.30823 * 120.00361 * 15.45679 * 19 17 16 21 21 Si 1.86808 * 119.99896 * 195.46043 * 19 17 16 22 22 H 1.48506 * 109.46892 * 359.97438 * 21 19 17 23 23 H 1.48492 * 109.47087 * 119.99736 * 21 19 17 24 24 H 1.48499 * 109.46709 * 240.00118 * 21 19 17 25 25 C 1.40716 * 119.51220 * 359.70103 * 16 15 14 26 26 C 1.37617 * 119.74638 * 0.02562 * 25 16 15 27 27 H 1.09004 * 109.46722 * 300.00095 * 1 2 3 28 28 H 1.09001 * 109.46838 * 59.99704 * 1 2 3 29 29 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46722 * 239.99905 * 2 1 3 31 31 H 1.09005 * 109.47088 * 177.11453 * 3 2 1 32 32 H 1.09000 * 109.47536 * 297.10969 * 3 2 1 33 33 H 1.08995 * 109.47152 * 57.11671 * 3 2 1 34 34 H 1.08999 * 109.47114 * 185.47460 * 6 4 2 35 35 H 1.09001 * 109.47547 * 305.47136 * 6 4 2 36 36 H 0.96701 * 114.00363 * 179.97438 * 7 6 4 37 37 H 1.08993 * 109.47347 * 65.00056 * 8 4 2 38 38 H 1.09001 * 109.46683 * 304.99855 * 8 4 2 39 39 H 0.97001 * 120.00241 * 344.99384 * 9 8 4 40 40 H 1.08001 * 119.87355 * 359.97438 * 14 13 10 41 41 H 1.07994 * 120.12449 * 180.27557 * 15 14 13 42 42 H 0.96998 * 120.00000 * 179.97438 * 20 19 17 43 43 H 1.07996 * 120.12556 * 179.97438 * 25 16 15 44 44 H 1.08001 * 119.87574 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1265 -0.6457 1.2943 6 6 1.6335 -2.1951 1.1888 7 8 2.3033 -2.8297 0.0977 8 6 1.4315 -0.0751 2.4954 9 7 2.0104 -0.6862 3.6945 10 16 1.8353 0.0517 5.1666 11 8 2.4739 -0.7908 6.1162 12 8 2.1876 1.4152 4.9764 13 6 0.1178 0.0316 5.5593 14 6 -0.6896 1.0888 5.1686 15 6 -2.0335 1.0811 5.4648 16 6 -2.5850 0.0003 6.1775 17 6 -3.9631 -0.0153 6.4934 18 1 -4.3188 -0.5985 7.3299 19 6 -4.8662 0.7249 5.7221 20 7 -4.5053 1.1808 4.5501 21 14 -6.5871 1.0621 6.3659 22 1 -6.7446 0.4417 7.7060 23 1 -6.7978 2.5283 6.4709 24 1 -7.5869 0.4838 5.4326 25 6 -1.7549 -1.0645 6.5739 26 6 -0.4148 -1.0383 6.2618 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 3.1289 1.4429 0.0517 32 1 1.7197 1.9412 -0.9147 33 1 1.6351 1.9710 0.8630 34 1 1.9110 -2.6870 2.1211 35 1 0.5554 -2.2691 1.0460 36 1 2.0926 -3.7683 -0.0009 37 1 0.3525 -0.2285 2.4942 38 1 1.6466 0.9935 2.4923 39 1 2.4995 -1.5210 3.6255 40 1 -0.2630 1.9196 4.6261 41 1 -2.6614 1.9035 5.1557 42 1 -5.1314 1.6935 4.0154 43 1 -2.1677 -1.8987 7.1216 44 1 0.2243 -1.8542 6.5653 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000394168678.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:05 Heat of formation + Delta-G solvation = -134.050095 kcal Electronic energy + Delta-G solvation = -26466.234931 eV Core-core repulsion = 22702.198557 eV Total energy + Delta-G solvation = -3764.036374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -38.80718 -37.59747 -36.49722 -35.88075 -35.13009 -34.08513 -33.98707 -30.27715 -29.47892 -29.36370 -27.22047 -25.85190 -25.29498 -22.76089 -21.53056 -21.15689 -19.28801 -18.71837 -17.65262 -17.60519 -17.04232 -16.43011 -16.07359 -15.54642 -15.34760 -14.85582 -14.52669 -14.17478 -13.80242 -13.58799 -13.37788 -13.22517 -13.01444 -12.62236 -12.43099 -12.29639 -12.18624 -11.95074 -11.82996 -11.54964 -11.46801 -11.40815 -11.35470 -11.29431 -11.20045 -10.93569 -10.80050 -10.49518 -10.39887 -10.36506 -9.93555 -9.79389 -9.63877 -9.54926 -9.00854 -7.98268 -7.72257 -7.14927 -4.83506 1.25716 2.22325 2.85856 2.87869 2.90857 2.93227 3.64194 3.72912 4.08839 4.22321 4.51220 4.67640 4.74992 4.93065 5.17660 5.23379 5.33741 5.36755 5.41348 5.46124 5.61026 5.71394 5.72705 5.75906 5.93231 5.96662 6.03128 6.05359 6.10350 6.16864 6.27176 6.38757 6.47375 6.65472 6.68409 6.90590 7.02749 7.28205 7.32627 7.40524 7.50337 7.62519 7.75776 7.94593 8.30262 8.49449 8.62986 9.74631 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011988 B = 0.003975 C = 0.003407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.099183 B = 7042.426827 C = 8217.387744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.085 4.085 3 C -0.154 4.154 4 C -0.087 4.087 5 H 0.084 0.916 6 C 0.074 3.926 7 O -0.574 6.574 8 C 0.122 3.878 9 N -1.128 6.128 10 S 2.693 3.307 11 O -0.987 6.987 12 O -0.984 6.984 13 C -0.786 4.786 14 C -0.018 4.018 15 C -0.182 4.182 16 C 0.138 3.862 17 C -0.433 4.433 18 H 0.087 0.913 19 C 0.071 3.929 20 N -0.768 5.768 21 Si 0.917 3.083 22 H -0.257 1.257 23 H -0.267 1.267 24 H -0.270 1.270 25 C -0.239 4.239 26 C 0.002 3.998 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.377 0.623 37 H 0.074 0.926 38 H 0.085 0.915 39 H 0.408 0.592 40 H 0.103 0.897 41 H 0.127 0.873 42 H 0.288 0.712 43 H 0.099 0.901 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.226 -3.488 -9.069 11.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.104 4.104 3 C -0.211 4.211 4 C -0.107 4.107 5 H 0.102 0.898 6 C -0.003 4.003 7 O -0.379 6.379 8 C -0.004 4.004 9 N -0.885 5.885 10 S 2.792 3.208 11 O -0.978 6.978 12 O -0.974 6.974 13 C -0.882 4.882 14 C -0.038 4.038 15 C -0.202 4.202 16 C 0.134 3.866 17 C -0.461 4.461 18 H 0.105 0.895 19 C -0.150 4.150 20 N -0.390 5.390 21 Si 0.741 3.259 22 H -0.180 1.180 23 H -0.192 1.192 24 H -0.195 1.195 25 C -0.260 4.260 26 C -0.018 4.018 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.223 0.777 37 H 0.092 0.908 38 H 0.103 0.897 39 H 0.241 0.759 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.012 -2.213 -8.866 10.938 hybrid contribution -1.646 -0.997 0.120 1.928 sum 4.366 -3.210 -8.746 10.289 Atomic orbital electron populations 1.22014 0.95010 1.01993 1.02395 1.21035 0.95985 0.95930 0.97473 1.21950 1.01040 0.96016 1.02119 1.21365 1.01517 0.93212 0.94617 0.89807 1.22329 0.96170 0.93094 0.88741 1.86443 1.71600 1.27588 1.52252 1.21381 0.98147 0.97882 0.83009 1.55800 1.70488 1.38327 1.23907 1.01217 0.75147 0.72786 0.71660 1.93489 1.76087 1.68762 1.59452 1.93480 1.83752 1.34546 1.85647 1.29157 1.22602 1.08328 1.28140 1.20281 0.93983 0.94285 0.95268 1.21431 0.93293 0.99980 1.05532 1.17871 0.92765 0.89154 0.86780 1.19992 0.91757 1.22770 1.11553 0.89463 1.26134 1.02097 0.93027 0.93778 1.69804 1.37294 1.24080 1.07869 0.86093 0.80020 0.79400 0.80432 1.18000 1.19217 1.19520 1.21050 0.93776 1.00037 1.11113 1.20155 0.94951 0.94136 0.92607 0.91681 0.92718 0.92541 0.90287 0.92676 0.92672 0.91965 0.93430 0.92740 0.77655 0.90786 0.89671 0.75910 0.87912 0.85557 0.90072 0.88248 0.87840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 8.47 37.16 0.31 -1.44 16 2 C -0.09 -0.93 2.65 -90.62 -0.24 -1.17 16 3 C -0.15 -1.63 8.88 37.16 0.33 -1.30 16 4 C -0.09 -1.02 1.98 -90.62 -0.18 -1.20 16 5 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 6 C 0.07 0.80 6.23 37.16 0.23 1.03 16 7 O -0.57 -5.87 13.13 -35.23 -0.46 -6.33 16 8 C 0.12 1.68 4.82 -4.04 -0.02 1.66 16 9 N -1.13 -16.63 5.85 -10.61 -0.06 -16.69 16 10 S 2.69 51.20 5.73 -107.50 -0.62 50.58 16 11 O -0.99 -20.70 17.26 -57.17 -0.99 -21.68 16 12 O -0.98 -20.82 16.71 -57.17 -0.96 -21.78 16 13 C -0.79 -16.95 5.97 -39.29 -0.23 -17.18 16 14 C -0.02 -0.40 9.49 -39.66 -0.38 -0.78 16 15 C -0.18 -4.45 8.70 -38.87 -0.34 -4.79 16 16 C 0.14 3.43 5.59 -106.82 -0.60 2.83 16 17 C -0.43 -10.46 9.07 -37.74 -0.34 -10.80 16 18 H 0.09 2.00 7.89 -52.49 -0.41 1.59 16 19 C 0.07 1.61 5.20 -17.34 -0.09 1.52 16 20 N -0.77 -17.74 10.77 55.55 0.60 -17.14 16 21 Si 0.92 16.74 29.59 -169.99 -5.03 11.71 16 22 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 23 H -0.27 -4.83 7.11 56.52 0.40 -4.42 16 24 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 25 C -0.24 -5.56 9.80 -38.87 -0.38 -5.94 16 26 C 0.00 0.04 9.49 -39.66 -0.38 -0.34 16 27 H 0.06 0.79 6.46 -51.93 -0.34 0.46 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.62 6.45 -51.93 -0.33 0.28 16 30 H 0.08 0.88 7.71 -51.93 -0.40 0.48 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.70 6.60 -51.93 -0.34 0.35 16 34 H 0.05 0.49 6.78 -51.93 -0.35 0.14 16 35 H 0.05 0.58 6.32 -51.93 -0.33 0.25 16 36 H 0.38 2.27 9.12 45.56 0.42 2.69 16 37 H 0.07 1.06 6.65 -51.93 -0.35 0.71 16 38 H 0.09 1.20 6.00 -51.93 -0.31 0.89 16 39 H 0.41 5.08 7.38 -34.47 -0.25 4.83 16 40 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 41 H 0.13 3.13 6.02 -52.49 -0.32 2.82 16 42 H 0.29 5.95 8.30 -40.82 -0.34 5.61 16 43 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 44 H 0.10 2.06 7.60 -52.49 -0.40 1.66 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -30.03 364.19 -9.69 -39.72 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -5.36 Total: 14.03 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: -2.30 Total: -37.90 kcal Atomic # 7 Polarization: -34.37 SS G_CDS: 0.54 Total: -33.83 kcal Atomic # 8 Polarization: -47.39 SS G_CDS: -2.40 Total: -49.79 kcal Atomic # 14 Polarization: 16.74 SS G_CDS: -5.03 Total: 11.71 kcal Atomic # 16 Polarization: 51.20 SS G_CDS: -0.62 Total: 50.58 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.03 -9.69 -39.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394168678.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.326 kcal (2) G-P(sol) polarization free energy of solvation -30.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.724 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds