Wall clock time and date at job start Tue Mar 31 2020 14:40:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47421 * 2 1 4 4 C 1.38284 * 119.94510 * 89.99984 * 3 2 1 5 5 C 1.38119 * 120.05724 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.94622 * 359.97438 * 5 4 3 7 7 O 1.35896 * 120.05664 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00068 * 359.97438 * 7 6 5 9 9 C 1.50704 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.38634 * 119.74583 * 269.72619 * 9 8 7 11 11 C 1.37623 * 120.24873 * 179.71967 * 10 9 8 12 12 C 1.40716 * 119.74127 * 0.57623 * 11 10 9 13 13 C 1.41392 * 120.24454 * 179.68019 * 12 11 10 14 14 H 1.07998 * 119.99917 * 24.39798 * 13 12 11 15 15 C 1.39951 * 119.99953 * 204.40479 * 13 12 11 16 16 N 1.30823 * 120.00056 * 17.86354 * 15 13 12 17 17 Si 1.86802 * 119.99863 * 197.86637 * 15 13 12 18 18 H 1.48501 * 109.46969 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.46976 * 119.99854 * 17 15 13 20 20 H 1.48495 * 109.46835 * 240.00105 * 17 15 13 21 21 C 1.40721 * 119.51353 * 359.69981 * 12 11 10 22 22 C 1.37623 * 119.74128 * 0.02562 * 21 12 11 23 23 C 1.38706 * 119.88575 * 0.25492 * 6 5 4 24 24 N 1.48003 * 120.02804 * 179.74556 * 23 6 5 25 25 O 1.21800 * 120.00031 * 180.02562 * 24 23 6 26 26 O 1.21800 * 120.00035 * 359.97438 * 24 23 6 27 27 C 1.38175 * 119.94566 * 359.51328 * 23 6 5 28 28 H 1.09005 * 109.46734 * 300.00071 * 1 2 3 29 29 H 1.09002 * 109.46903 * 59.99701 * 1 2 3 30 30 H 1.08997 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46734 * 239.99929 * 2 1 3 32 32 H 1.09002 * 109.46903 * 120.00299 * 2 1 3 33 33 H 1.08003 * 119.97215 * 0.02776 * 4 3 2 34 34 H 1.08001 * 120.02684 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47407 * 60.00316 * 8 7 6 36 36 H 1.09002 * 109.47092 * 300.00166 * 8 7 6 37 37 H 1.08001 * 119.87918 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.12831 * 180.27541 * 11 10 9 39 39 H 0.96992 * 119.99929 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.13060 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.87343 * 179.97438 * 22 21 12 42 42 H 1.07993 * 119.97482 * 180.22856 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0716 1.1982 5 6 2.7225 3.3739 1.2009 6 6 2.9542 4.0292 0.0000 7 8 3.4063 5.3107 0.0000 8 6 3.6210 5.9229 1.2733 9 6 4.1176 7.3320 1.0758 10 6 5.4797 7.5759 0.9922 11 6 5.9443 8.8579 0.8062 12 6 5.0314 9.9246 0.7130 13 6 5.4973 11.2468 0.5287 14 1 6.4622 11.4211 0.0758 15 6 4.7083 12.3296 0.9332 16 7 3.7272 12.1443 1.7785 17 14 5.0562 14.0394 0.2662 18 1 6.2107 13.9816 -0.6660 19 1 3.8602 14.5414 -0.4567 20 1 5.3746 14.9544 1.3916 21 6 3.6512 9.6659 0.8050 22 6 3.2091 8.3752 0.9854 23 6 2.7181 3.3758 -1.2006 24 7 2.9588 4.0736 -2.4834 25 8 2.7508 3.4996 -3.5373 26 8 3.3640 5.2223 -2.4851 27 6 2.2625 2.0713 -1.1979 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0825 1.5610 2.1328 34 1 2.9017 3.8819 2.1371 35 1 4.3624 5.3509 1.8311 36 1 2.6838 5.9429 1.8295 37 1 6.1788 6.7563 1.0693 38 1 7.0057 9.0451 0.7369 39 1 3.1801 12.8946 2.0586 40 1 2.9418 10.4772 0.7352 41 1 2.1503 8.1743 1.0567 42 1 2.0820 1.5610 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399003160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:39 Heat of formation + Delta-G solvation = -10.920828 kcal Electronic energy + Delta-G solvation = -26404.535094 eV Core-core repulsion = 22510.394055 eV Total energy + Delta-G solvation = -3894.141039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.91588 -40.29803 -38.44022 -37.34208 -36.10658 -34.24937 -33.75014 -32.06898 -30.88796 -29.40897 -29.20975 -27.27351 -26.31311 -24.49250 -23.81781 -22.50668 -21.33171 -21.11026 -20.06491 -19.00756 -18.36173 -17.75179 -17.40255 -17.23702 -16.42759 -15.72409 -15.33536 -15.23803 -14.95007 -14.66436 -14.05944 -13.96575 -13.77673 -13.49188 -13.17595 -12.81334 -12.56414 -12.23025 -12.10260 -12.03064 -11.65897 -11.52018 -11.38185 -11.25966 -11.21305 -11.12960 -10.91321 -10.75727 -10.73613 -10.54171 -10.49411 -9.78478 -9.72790 -9.49013 -9.22952 -8.53118 -7.57123 -7.47088 -6.88321 -4.46816 -0.01222 0.85787 1.47259 1.65425 2.41684 2.95625 3.01322 3.04422 3.09598 3.11956 3.44320 3.86334 4.14225 4.28941 4.45168 4.55759 4.60967 4.67981 4.92999 4.96252 5.09513 5.21954 5.35314 5.38614 5.43639 5.50129 5.58250 5.64223 5.66516 5.80126 5.88639 5.98399 6.14082 6.21530 6.28255 6.62428 6.86434 6.96694 7.16442 7.23876 7.25790 7.50900 7.73155 7.96040 7.97961 7.98048 8.18617 8.53633 8.78324 8.86209 10.05720 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.002471 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.916721 B =11330.802764 C =11884.186902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.076 4.076 3 C -0.135 4.135 4 C -0.025 4.025 5 C -0.216 4.216 6 C 0.205 3.795 7 O -0.271 6.271 8 C 0.119 3.881 9 C -0.236 4.236 10 C -0.060 4.060 11 C -0.230 4.230 12 C 0.121 3.879 13 C -0.453 4.453 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.786 5.786 17 Si 0.910 3.090 18 H -0.259 1.259 19 H -0.270 1.270 20 H -0.274 1.274 21 C -0.170 4.170 22 C -0.072 4.072 23 C -0.089 4.089 24 N 0.035 4.965 25 O -0.197 6.197 26 O -0.120 6.120 27 C -0.019 4.019 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.152 0.848 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.282 0.718 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.703 -19.540 1.697 20.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.114 4.114 3 C -0.136 4.136 4 C -0.043 4.043 5 C -0.235 4.235 6 C 0.153 3.847 7 O -0.181 6.181 8 C 0.047 3.953 9 C -0.238 4.238 10 C -0.078 4.078 11 C -0.249 4.249 12 C 0.118 3.882 13 C -0.482 4.482 14 H 0.100 0.900 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.734 3.266 18 H -0.182 1.182 19 H -0.195 1.195 20 H -0.199 1.199 21 C -0.189 4.189 22 C -0.090 4.090 23 C -0.174 4.174 24 N 0.552 4.448 25 O -0.402 6.402 26 O -0.344 6.344 27 C -0.038 4.038 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.095 0.905 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.093 0.907 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -5.961 -19.634 2.252 20.642 hybrid contribution 0.130 0.979 -0.266 1.023 sum -5.830 -18.656 1.986 19.646 Atomic orbital electron populations 1.21803 0.94529 1.01989 1.02460 1.20463 0.96290 0.91210 1.03399 1.19696 1.04534 0.97828 0.91587 1.21238 0.91632 0.93103 0.98336 1.21401 1.08164 0.96850 0.97097 1.18937 0.88144 0.86117 0.91507 1.86747 1.75773 1.20163 1.35377 1.21763 0.99235 0.92804 0.81548 1.18457 0.93698 0.90198 1.21416 1.20340 0.93559 0.95857 0.98039 1.20940 0.97851 0.92931 1.13185 1.17699 0.91543 0.92616 0.86366 1.19729 1.03692 0.90267 1.34499 0.90042 1.25986 0.93764 1.01928 0.92716 1.69824 1.15144 1.33996 1.22058 0.86227 0.79812 0.80805 0.79760 1.18204 1.19521 1.19910 1.21289 0.96132 0.94864 1.06599 1.20487 0.96473 0.93263 0.98805 1.20542 1.19199 0.95439 0.82185 1.43347 0.98269 1.01127 1.02048 1.94471 1.57269 1.68706 1.19788 1.94704 1.44988 1.00653 1.94105 1.20717 0.92524 0.90342 1.00220 0.92438 0.92395 0.92098 0.90603 0.90516 0.84210 0.83070 0.92244 0.92175 0.89409 0.88670 0.90684 0.86219 0.89441 0.82974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.90 37.16 0.37 -0.48 16 2 C -0.08 -0.45 6.06 -27.88 -0.17 -0.62 16 3 C -0.14 -1.18 5.14 -104.60 -0.54 -1.72 16 4 C -0.02 -0.21 9.69 -39.61 -0.38 -0.59 16 5 C -0.22 -2.37 9.04 -39.43 -0.36 -2.72 16 6 C 0.20 3.04 6.67 -39.22 -0.26 2.78 16 7 O -0.27 -4.91 8.13 -41.54 -0.34 -5.24 16 8 C 0.12 2.01 4.86 36.01 0.17 2.18 16 9 C -0.24 -5.07 5.53 -104.33 -0.58 -5.65 16 10 C -0.06 -1.32 9.67 -39.66 -0.38 -1.70 16 11 C -0.23 -5.58 9.80 -38.87 -0.38 -5.96 16 12 C 0.12 3.18 5.58 -106.82 -0.60 2.58 16 13 C -0.45 -11.81 9.05 -37.74 -0.34 -12.15 16 14 H 0.08 2.04 7.91 -52.49 -0.42 1.63 16 15 C 0.07 1.84 5.14 -17.34 -0.09 1.75 16 16 N -0.79 -19.74 10.95 55.55 0.61 -19.13 16 17 Si 0.91 18.27 29.60 -169.99 -5.03 13.24 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 22 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 23 C -0.09 -1.33 6.87 -79.81 -0.55 -1.88 16 24 N 0.03 0.63 4.45 34.03 0.15 0.78 16 25 O -0.20 -3.47 18.45 -29.46 -0.54 -4.01 16 26 O -0.12 -2.51 17.24 -36.49 -0.63 -3.14 16 27 C -0.02 -0.21 9.20 -39.60 -0.36 -0.58 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 33 H 0.14 0.74 8.06 -52.48 -0.42 0.31 16 34 H 0.15 1.41 6.30 -52.49 -0.33 1.08 16 35 H 0.06 0.86 7.60 -51.93 -0.39 0.47 16 36 H 0.06 0.89 7.60 -51.93 -0.39 0.50 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 39 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 40 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 41 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 42 H 0.15 1.49 7.61 -52.49 -0.40 1.09 16 LS Contribution 364.99 15.07 5.50 5.50 Total: -1.00 -29.53 364.99 -10.64 -40.17 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.19 Total: 3.33 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: -5.17 Total: -31.50 kcal Atomic # 7 Polarization: -19.11 SS G_CDS: 0.76 Total: -18.35 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -1.51 Total: -12.39 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -29.53 -10.64 -40.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399003160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.245 kcal (2) G-P(sol) polarization free energy of solvation -29.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds