Wall clock time and date at job start Tue Mar 31 2020 14:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47421 * 2 1 4 4 C 1.38284 * 119.94510 * 89.99984 * 3 2 1 5 5 C 1.38119 * 120.05724 * 180.02562 * 4 3 2 6 6 C 1.38756 * 119.94622 * 359.97438 * 5 4 3 7 7 O 1.35896 * 120.05664 * 179.97438 * 6 5 4 8 8 C 1.42901 * 117.00068 * 359.97438 * 7 6 5 9 9 C 1.50704 * 109.47000 * 180.02562 * 8 7 6 10 10 C 1.38634 * 119.74583 * 269.72619 * 9 8 7 11 11 C 1.37623 * 120.24873 * 179.71967 * 10 9 8 12 12 C 1.40716 * 119.74127 * 0.57623 * 11 10 9 13 13 C 1.41392 * 120.24454 * 179.68019 * 12 11 10 14 14 H 1.07998 * 119.99917 * 24.39798 * 13 12 11 15 15 C 1.39951 * 119.99953 * 204.40479 * 13 12 11 16 16 N 1.30823 * 120.00056 * 17.86354 * 15 13 12 17 17 Si 1.86802 * 119.99863 * 197.86637 * 15 13 12 18 18 H 1.48501 * 109.46969 * 359.97438 * 17 15 13 19 19 H 1.48492 * 109.46976 * 119.99854 * 17 15 13 20 20 H 1.48495 * 109.46835 * 240.00105 * 17 15 13 21 21 C 1.40721 * 119.51353 * 359.69981 * 12 11 10 22 22 C 1.37623 * 119.74128 * 0.02562 * 21 12 11 23 23 C 1.38706 * 119.88575 * 0.25492 * 6 5 4 24 24 N 1.48003 * 120.02804 * 179.74556 * 23 6 5 25 25 O 1.21800 * 120.00031 * 180.02562 * 24 23 6 26 26 O 1.21800 * 120.00035 * 359.97438 * 24 23 6 27 27 C 1.38175 * 119.94566 * 359.51328 * 23 6 5 28 28 H 1.09005 * 109.46734 * 300.00071 * 1 2 3 29 29 H 1.09002 * 109.46903 * 59.99701 * 1 2 3 30 30 H 1.08997 * 109.47281 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46734 * 239.99929 * 2 1 3 32 32 H 1.09002 * 109.46903 * 120.00299 * 2 1 3 33 33 H 1.08003 * 119.97215 * 0.02776 * 4 3 2 34 34 H 1.08001 * 120.02684 * 179.97438 * 5 4 3 35 35 H 1.08998 * 109.47407 * 60.00316 * 8 7 6 36 36 H 1.09002 * 109.47092 * 300.00166 * 8 7 6 37 37 H 1.08001 * 119.87918 * 359.97438 * 10 9 8 38 38 H 1.07995 * 120.12831 * 180.27541 * 11 10 9 39 39 H 0.96992 * 119.99929 * 180.02562 * 16 15 13 40 40 H 1.07996 * 120.13060 * 179.97438 * 21 12 11 41 41 H 1.08001 * 119.87343 * 179.97438 * 22 21 12 42 42 H 1.07993 * 119.97482 * 180.22856 * 27 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2625 2.0716 1.1982 5 6 2.7225 3.3739 1.2009 6 6 2.9542 4.0292 0.0000 7 8 3.4063 5.3107 0.0000 8 6 3.6210 5.9229 1.2733 9 6 4.1176 7.3320 1.0758 10 6 5.4797 7.5759 0.9922 11 6 5.9443 8.8579 0.8062 12 6 5.0314 9.9246 0.7130 13 6 5.4973 11.2468 0.5287 14 1 6.4622 11.4211 0.0758 15 6 4.7083 12.3296 0.9332 16 7 3.7272 12.1443 1.7785 17 14 5.0562 14.0394 0.2662 18 1 6.2107 13.9816 -0.6660 19 1 3.8602 14.5414 -0.4567 20 1 5.3746 14.9544 1.3916 21 6 3.6512 9.6659 0.8050 22 6 3.2091 8.3752 0.9854 23 6 2.7181 3.3758 -1.2006 24 7 2.9588 4.0736 -2.4834 25 8 2.7508 3.4996 -3.5373 26 8 3.3640 5.2223 -2.4851 27 6 2.2625 2.0713 -1.1979 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.0825 1.5610 2.1328 34 1 2.9017 3.8819 2.1371 35 1 4.3624 5.3509 1.8311 36 1 2.6838 5.9429 1.8295 37 1 6.1788 6.7563 1.0693 38 1 7.0057 9.0451 0.7369 39 1 3.1801 12.8946 2.0586 40 1 2.9418 10.4772 0.7352 41 1 2.1503 8.1743 1.0567 42 1 2.0820 1.5610 -2.1324 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399003160.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:38 Heat of formation + Delta-G solvation = -23.752268 kcal Electronic energy + Delta-G solvation = -26405.091507 eV Core-core repulsion = 22510.394055 eV Total energy + Delta-G solvation = -3894.697452 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.18323 -41.39325 -39.74162 -38.87214 -37.47992 -35.78402 -34.75927 -32.99924 -32.53719 -31.24435 -30.12849 -28.84875 -27.46782 -25.95654 -24.60467 -23.68598 -22.97629 -22.27966 -21.70555 -20.13522 -19.65606 -19.29104 -18.78909 -18.54750 -17.57116 -17.20578 -16.83774 -16.10853 -15.92728 -15.78141 -15.64880 -15.26395 -14.71335 -14.53003 -14.33668 -14.08672 -13.87970 -13.66750 -13.37194 -13.16357 -12.97748 -12.88324 -12.77768 -12.63251 -12.47945 -12.23103 -12.20721 -12.11574 -11.96266 -11.89064 -11.76542 -11.50064 -11.32398 -11.05247 -10.66019 -9.48656 -9.44434 -9.34922 -8.71121 -6.41000 -1.16132 -0.01554 0.32337 0.48328 0.74340 1.10379 1.36421 1.42607 1.52247 2.08843 2.18495 2.25173 2.73410 3.29678 3.51897 3.62841 3.74077 3.86822 3.92117 4.05767 4.08277 4.28776 4.37988 4.45024 4.48305 4.52114 4.52593 4.56471 4.82777 4.89677 4.97804 4.99190 5.10234 5.15539 5.20527 5.29046 5.38299 5.38742 5.39307 5.49218 5.63521 5.84983 6.04442 6.10940 6.13902 6.31070 6.55703 6.63217 6.87180 6.95939 8.26183 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.022947 B = 0.002471 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.916721 B =11330.802764 C =11884.186902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.075 4.075 3 C -0.117 4.117 4 C -0.004 4.004 5 C -0.211 4.211 6 C 0.177 3.823 7 O -0.305 6.305 8 C 0.123 3.877 9 C -0.228 4.228 10 C -0.065 4.065 11 C -0.249 4.249 12 C 0.087 3.913 13 C -0.494 4.494 14 H 0.077 0.923 15 C 0.035 3.965 16 N -0.817 5.817 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.264 1.264 20 H -0.261 1.261 21 C -0.196 4.196 22 C -0.080 4.080 23 C -0.111 4.111 24 N 0.039 4.961 25 O -0.175 6.175 26 O -0.210 6.210 27 C -0.024 4.024 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.100 0.900 39 H 0.291 0.709 40 H 0.103 0.897 41 H 0.106 0.894 42 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.734 -23.316 3.438 24.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 C -0.118 4.118 4 C -0.022 4.022 5 C -0.230 4.230 6 C 0.127 3.873 7 O -0.217 6.217 8 C 0.051 3.949 9 C -0.229 4.229 10 C -0.083 4.083 11 C -0.268 4.268 12 C 0.085 3.915 13 C -0.523 4.523 14 H 0.095 0.905 15 C -0.181 4.181 16 N -0.443 5.443 17 Si 0.804 3.196 18 H -0.183 1.183 19 H -0.189 1.189 20 H -0.186 1.186 21 C -0.215 4.215 22 C -0.098 4.098 23 C -0.196 4.196 24 N 0.548 4.452 25 O -0.391 6.391 26 O -0.414 6.414 27 C -0.043 4.043 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.204 0.796 34 H 0.190 0.810 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.136 0.864 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.121 0.879 41 H 0.124 0.876 42 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -6.945 -23.293 4.040 24.640 hybrid contribution 0.300 1.639 -0.774 1.837 sum -6.645 -21.654 3.266 22.885 Atomic orbital electron populations 1.21816 0.94242 1.02860 1.01984 1.20589 0.96320 0.89114 1.05166 1.20163 1.02017 0.98996 0.90618 1.21806 0.88453 0.91836 1.00068 1.21714 1.07422 0.97790 0.96083 1.19261 0.89927 0.85226 0.92913 1.86627 1.77265 1.22399 1.35368 1.21697 1.01145 0.90289 0.81785 1.18958 0.93263 0.92724 1.17975 1.20709 0.94727 0.95812 0.97048 1.21171 0.98037 0.93733 1.13873 1.18049 0.92291 0.93630 0.87567 1.19931 1.04473 0.91268 1.36621 0.90483 1.26815 0.93299 1.05587 0.92385 1.69862 1.16022 1.35543 1.22847 0.85138 0.79579 0.75699 0.79198 1.18262 1.18871 1.18591 1.21271 0.95861 0.95679 1.08722 1.20777 0.97915 0.92883 0.98256 1.20894 1.21689 0.96707 0.80347 1.43842 0.97285 1.00833 1.03232 1.94399 1.55328 1.68069 1.21313 1.94711 1.49426 1.02557 1.94698 1.21023 0.92355 0.88852 1.02108 0.92201 0.93656 0.90659 0.89817 0.87940 0.79580 0.81020 0.89297 0.89871 0.86430 0.88180 0.89866 0.87949 0.87638 0.81858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.90 71.98 0.71 -0.33 16 2 C -0.07 -0.48 6.06 29.85 0.18 -0.30 16 3 C -0.12 -1.49 5.14 -19.85 -0.10 -1.59 16 4 C 0.00 -0.04 9.69 22.25 0.22 0.17 16 5 C -0.21 -3.76 9.04 22.37 0.20 -3.56 16 6 C 0.18 5.00 6.67 22.51 0.15 5.15 16 7 O -0.31 -11.01 8.13 -71.23 -0.58 -11.59 16 8 C 0.12 3.94 4.86 71.24 0.35 4.28 16 9 C -0.23 -9.79 5.53 -19.68 -0.11 -9.90 16 10 C -0.06 -2.90 9.67 22.22 0.21 -2.68 16 11 C -0.25 -12.62 9.80 22.73 0.22 -12.39 16 12 C 0.09 4.86 5.58 -21.29 -0.12 4.74 16 13 C -0.49 -27.30 9.05 23.46 0.21 -27.08 16 14 H 0.08 4.12 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.79 5.14 85.26 0.44 2.23 16 16 N -0.82 -42.87 10.95 21.83 0.24 -42.64 16 17 Si 0.98 38.69 29.60 68.60 2.03 40.72 16 18 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.97 16 21 C -0.20 -10.65 8.70 22.73 0.20 -10.45 16 22 C -0.08 -3.80 9.67 22.22 0.21 -3.59 16 23 C -0.11 -3.24 6.87 36.48 0.25 -2.99 16 24 N 0.04 1.47 4.45 -46.24 -0.21 1.26 16 25 O -0.18 -6.23 18.45 18.89 0.35 -5.88 16 26 O -0.21 -9.41 17.24 25.61 0.44 -8.97 16 27 C -0.02 -0.49 9.20 22.26 0.20 -0.28 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 0.48 8.08 -2.38 -0.02 0.47 16 32 H 0.10 0.24 8.08 -2.39 -0.02 0.22 16 33 H 0.19 0.48 8.06 -2.91 -0.02 0.46 16 34 H 0.17 2.33 6.30 -2.91 -0.02 2.31 16 35 H 0.09 2.28 7.60 -2.39 -0.02 2.26 16 36 H 0.08 2.23 7.60 -2.39 -0.02 2.21 16 37 H 0.12 4.46 8.06 -2.91 -0.02 4.44 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.29 13.63 8.30 -92.71 -0.77 12.86 16 40 H 0.10 5.80 6.15 -2.91 -0.02 5.78 16 41 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 42 H 0.16 2.80 7.61 -2.91 -0.02 2.78 16 Total: -1.00 -71.85 364.99 6.75 -65.09 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 1.04 Total: 20.58 kcal Atomic # 6 Polarization: -62.01 SS G_CDS: 3.43 Total: -58.58 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: 0.03 Total: -41.38 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: 0.21 Total: -26.44 kcal Atomic # 14 Polarization: 38.69 SS G_CDS: 2.03 Total: 40.72 kcal Total: -71.85 6.75 -65.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399003160.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.343 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds