Wall clock time and date at job start Tue Mar 31 2020 15:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99923 * 2 1 4 4 C 1.52992 * 109.47238 * 60.00222 * 3 2 1 5 5 C 1.52999 * 109.47340 * 300.00046 * 3 2 1 6 6 C 1.53002 * 109.47098 * 180.02562 * 3 2 1 7 7 N 1.46502 * 109.47185 * 293.68549 * 6 3 2 8 8 C 1.46496 * 119.99823 * 72.90293 * 7 6 3 9 9 S 1.65600 * 120.00292 * 252.90584 * 7 6 3 10 10 O 1.42100 * 106.39992 * 23.53465 * 9 7 6 11 11 O 1.42099 * 106.40517 * 156.45917 * 9 7 6 12 12 C 1.76197 * 107.21666 * 270.00066 * 9 7 6 13 13 C 1.38638 * 119.74843 * 269.72777 * 12 9 7 14 14 C 1.37620 * 120.25238 * 179.72329 * 13 12 9 15 15 C 1.40716 * 119.74092 * 0.56584 * 14 13 12 16 16 C 1.41389 * 120.24351 * 179.68338 * 15 14 13 17 17 H 1.08008 * 120.00066 * 208.93477 * 16 15 14 18 18 C 1.39944 * 120.00408 * 28.93680 * 16 15 14 19 19 N 1.30825 * 119.99253 * 10.34594 * 18 16 15 20 20 Si 1.86795 * 120.00424 * 190.34530 * 18 16 15 21 21 H 1.48509 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47169 * 119.99841 * 20 18 16 23 23 H 1.48497 * 109.47240 * 239.99918 * 20 18 16 24 24 C 1.40720 * 119.51262 * 359.71017 * 15 14 13 25 25 C 1.37616 * 119.74250 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47145 * 299.99579 * 1 2 3 27 27 H 1.08997 * 109.47851 * 60.00032 * 1 2 3 28 28 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47371 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47501 * 299.99851 * 4 3 2 31 31 H 1.09008 * 109.47245 * 60.00070 * 4 3 2 32 32 H 1.09001 * 109.46898 * 307.54297 * 5 3 2 33 33 H 1.09001 * 109.47086 * 67.53218 * 5 3 2 34 34 H 1.08992 * 109.47583 * 187.53826 * 5 3 2 35 35 H 1.09002 * 109.47125 * 173.69095 * 6 3 2 36 36 H 1.08995 * 109.47275 * 53.68799 * 6 3 2 37 37 H 1.09003 * 109.47467 * 265.34151 * 8 7 6 38 38 H 1.09000 * 109.47354 * 25.34041 * 8 7 6 39 39 H 1.09002 * 109.47464 * 145.34042 * 8 7 6 40 40 H 1.08002 * 119.87693 * 359.97438 * 13 12 9 41 41 H 1.07991 * 120.13150 * 180.27536 * 14 13 12 42 42 H 0.97006 * 119.99656 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.12976 * 179.97438 * 24 15 14 44 44 H 1.08004 * 119.87680 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1846 -0.0006 7 7 3.9789 0.5927 1.2639 8 6 3.7583 -0.8322 1.5229 9 16 4.7295 1.5343 2.4007 10 8 4.3187 2.8712 2.1491 11 8 4.5383 0.8845 3.6499 12 6 6.4588 1.4744 2.0682 13 6 7.2407 0.4977 2.6655 14 6 8.5914 0.4378 2.4087 15 6 9.1803 1.3802 1.5455 16 6 10.5682 1.3326 1.2794 17 1 11.1032 2.2392 1.0380 18 6 11.2487 0.1107 1.3288 19 7 10.5774 -1.0085 1.4193 20 14 13.1153 0.0779 1.2656 21 1 13.6316 1.4667 1.1638 22 1 13.6413 -0.5570 2.5007 23 1 13.5568 -0.7019 0.0815 24 6 8.3779 2.3706 0.9493 25 6 7.0283 2.4074 1.2155 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.0024 3.0603 1.2494 30 1 0.4722 2.1508 1.2493 31 1 1.8804 1.5237 2.1392 32 1 1.7607 1.4611 -2.1341 33 1 0.4897 2.2679 -1.1844 34 1 2.1039 3.0059 -1.3192 35 1 3.9782 2.1742 -0.1136 36 1 3.8492 0.5495 -0.8289 37 1 2.8315 -0.9607 2.0820 38 1 3.6883 -1.3671 0.5757 39 1 4.5910 -1.2292 2.1036 40 1 6.7875 -0.2214 3.3317 41 1 9.1979 -0.3266 2.8716 42 1 11.0491 -1.8555 1.4539 43 1 8.8196 3.0991 0.2855 44 1 6.4103 3.1664 0.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404308828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:44 Heat of formation + Delta-G solvation = -106.284330 kcal Electronic energy + Delta-G solvation = -26850.827294 eV Core-core repulsion = 23087.994934 eV Total energy + Delta-G solvation = -3762.832360 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.23642 -37.57509 -36.53722 -35.66239 -35.09664 -33.98969 -32.44554 -30.22987 -29.47946 -27.73749 -27.39287 -26.66877 -25.78917 -24.14157 -21.46573 -21.13990 -19.98775 -18.44966 -17.60768 -17.28053 -16.68192 -16.14187 -15.84773 -15.56002 -15.38398 -14.97859 -14.24012 -14.14103 -13.73818 -13.39059 -13.19731 -13.07201 -12.86896 -12.61538 -12.45041 -12.35192 -12.17183 -12.02612 -11.85098 -11.79682 -11.63053 -11.44453 -11.36329 -11.28118 -11.18110 -11.16640 -10.99383 -10.88290 -10.60527 -10.34230 -9.75719 -9.59037 -9.58531 -9.55489 -8.59279 -7.90017 -7.69696 -7.06422 -4.79810 1.21854 2.24577 2.89137 2.90494 2.92585 2.96644 3.63781 3.69347 3.75030 4.29204 4.52824 4.73193 4.84356 4.93191 5.10934 5.20565 5.26203 5.30892 5.39498 5.45811 5.55635 5.62342 5.68018 5.77049 5.81525 5.95270 5.99393 6.03036 6.05665 6.11414 6.22047 6.29601 6.37996 6.66972 6.72141 6.85824 7.02070 7.06049 7.23055 7.35852 7.41081 7.63311 7.78738 7.98627 8.34367 8.53335 8.65311 9.84330 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.003204 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.288322 B = 8738.327036 C = 8824.130900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.372 6.372 3 C 0.097 3.903 4 C -0.181 4.181 5 C -0.176 4.176 6 C 0.141 3.859 7 N -1.001 6.001 8 C 0.110 3.890 9 S 2.689 3.311 10 O -0.982 6.982 11 O -0.981 6.981 12 C -0.783 4.783 13 C -0.019 4.019 14 C -0.176 4.176 15 C 0.140 3.860 16 C -0.439 4.439 17 H 0.087 0.913 18 C 0.070 3.930 19 N -0.776 5.776 20 Si 0.920 3.080 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.271 1.271 24 C -0.235 4.235 25 C -0.002 4.002 26 H 0.041 0.959 27 H 0.040 0.960 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.125 0.875 42 H 0.287 0.713 43 H 0.101 0.899 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 0.223 -4.715 13.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.055 3.945 4 C -0.239 4.239 5 C -0.234 4.234 6 C 0.015 3.985 7 N -0.835 5.835 8 C -0.035 4.035 9 S 2.789 3.211 10 O -0.972 6.972 11 O -0.971 6.971 12 C -0.879 4.879 13 C -0.039 4.039 14 C -0.196 4.196 15 C 0.137 3.863 16 C -0.467 4.467 17 H 0.105 0.895 18 C -0.151 4.151 19 N -0.399 5.399 20 Si 0.743 3.257 21 H -0.181 1.181 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.255 4.255 25 C -0.023 4.023 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.102 0.898 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.118 0.882 36 H 0.098 0.902 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.121 0.879 41 H 0.143 0.857 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -13.050 0.212 -4.035 13.661 hybrid contribution 1.184 -0.225 -0.498 1.304 sum -11.866 -0.013 -4.533 12.702 Atomic orbital electron populations 1.22733 0.82225 1.02221 0.99923 1.87993 1.18878 1.27252 1.94976 1.21980 0.94543 0.83400 0.94529 1.22470 1.01214 1.02171 0.98033 1.22370 1.01845 1.01290 0.97930 1.21256 0.90785 0.99741 0.86730 1.57523 1.74101 1.20262 1.31638 1.21269 1.00756 0.79804 1.01710 1.01488 0.74497 0.72489 0.72659 1.93461 1.82937 1.35272 1.85568 1.93480 1.86853 1.76426 1.40390 1.29325 1.21665 1.13255 1.23638 1.20298 0.94663 0.93985 0.94950 1.21403 0.93746 1.02860 1.01585 1.17886 0.92911 0.89284 0.86266 1.19945 0.93348 0.94639 1.38740 0.89520 1.26107 1.01955 0.94993 0.92040 1.69798 1.38596 0.99110 1.32410 0.86061 0.80767 0.79941 0.78928 1.18106 1.19347 1.19574 1.21110 0.93313 1.04569 1.06533 1.20165 0.95393 0.93844 0.92859 0.94008 0.94148 0.90089 0.89779 0.92435 0.92380 0.91542 0.92159 0.90922 0.88191 0.90179 0.92990 0.91062 0.91881 0.87906 0.85705 0.90186 0.88120 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.21 101.05 1.03 1.27 16 2 O -0.37 -4.62 9.09 -35.23 -0.32 -4.94 16 3 C 0.10 1.19 0.90 -90.62 -0.08 1.11 16 4 C -0.18 -2.39 7.12 37.15 0.26 -2.13 16 5 C -0.18 -1.72 8.02 37.16 0.30 -1.42 16 6 C 0.14 1.97 4.82 -4.04 -0.02 1.95 16 7 N -1.00 -16.24 2.32 -121.76 -0.28 -16.52 16 8 C 0.11 1.63 9.02 59.84 0.54 2.17 16 9 S 2.69 52.94 5.01 -107.50 -0.54 52.41 16 10 O -0.98 -19.84 14.48 -57.17 -0.83 -20.67 16 11 O -0.98 -21.51 16.42 -57.17 -0.94 -22.44 16 12 C -0.78 -17.45 6.00 -39.29 -0.24 -17.68 16 13 C -0.02 -0.44 9.49 -39.66 -0.38 -0.82 16 14 C -0.18 -4.43 8.66 -38.87 -0.34 -4.77 16 15 C 0.14 3.57 5.55 -106.83 -0.59 2.97 16 16 C -0.44 -10.82 9.06 -37.74 -0.34 -11.16 16 17 H 0.09 2.03 7.87 -52.48 -0.41 1.61 16 18 C 0.07 1.61 5.26 -17.34 -0.09 1.52 16 19 N -0.78 -18.57 10.83 55.55 0.60 -17.97 16 20 Si 0.92 17.20 29.57 -169.99 -5.03 12.17 16 21 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 22 H -0.27 -4.96 7.11 56.52 0.40 -4.56 16 23 H -0.27 -4.98 7.11 56.52 0.40 -4.58 16 24 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 25 C 0.00 -0.05 9.49 -39.66 -0.38 -0.43 16 26 H 0.04 0.38 6.42 -51.93 -0.33 0.05 16 27 H 0.04 0.33 6.59 -51.93 -0.34 -0.01 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.17 7.39 -51.93 -0.38 0.78 16 30 H 0.06 0.63 6.54 -51.93 -0.34 0.29 16 31 H 0.06 0.87 7.04 -51.92 -0.37 0.50 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.52 6.96 -51.93 -0.36 0.15 16 34 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.10 1.36 7.19 -51.93 -0.37 0.99 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 38 H 0.07 0.94 8.03 -51.93 -0.42 0.52 16 39 H 0.06 0.96 7.96 -51.93 -0.41 0.55 16 40 H 0.10 2.26 7.59 -52.49 -0.40 1.86 16 41 H 0.13 3.19 6.22 -52.49 -0.33 2.87 16 42 H 0.29 6.16 8.30 -40.82 -0.34 5.82 16 43 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 44 H 0.10 2.03 7.60 -52.48 -0.40 1.63 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -29.29 362.86 -9.10 -38.39 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -6.53 Total: 7.43 kcal Atomic # 6 Polarization: -32.62 SS G_CDS: -0.70 Total: -33.32 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: 0.32 Total: -34.49 kcal Atomic # 8 Polarization: -45.97 SS G_CDS: -2.09 Total: -48.05 kcal Atomic # 14 Polarization: 17.20 SS G_CDS: -5.03 Total: 12.17 kcal Atomic # 16 Polarization: 52.94 SS G_CDS: -0.54 Total: 52.41 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.29 -9.10 -38.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404308828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.895 kcal (2) G-P(sol) polarization free energy of solvation -29.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds