Wall clock time and date at job start Tue Mar 31 2020 15:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42897 * 113.99923 * 2 1 4 4 C 1.52992 * 109.47238 * 60.00222 * 3 2 1 5 5 C 1.52999 * 109.47340 * 300.00046 * 3 2 1 6 6 C 1.53002 * 109.47098 * 180.02562 * 3 2 1 7 7 N 1.46502 * 109.47185 * 293.68549 * 6 3 2 8 8 C 1.46496 * 119.99823 * 72.90293 * 7 6 3 9 9 S 1.65600 * 120.00292 * 252.90584 * 7 6 3 10 10 O 1.42100 * 106.39992 * 23.53465 * 9 7 6 11 11 O 1.42099 * 106.40517 * 156.45917 * 9 7 6 12 12 C 1.76197 * 107.21666 * 270.00066 * 9 7 6 13 13 C 1.38638 * 119.74843 * 269.72777 * 12 9 7 14 14 C 1.37620 * 120.25238 * 179.72329 * 13 12 9 15 15 C 1.40716 * 119.74092 * 0.56584 * 14 13 12 16 16 C 1.41389 * 120.24351 * 179.68338 * 15 14 13 17 17 H 1.08008 * 120.00066 * 208.93477 * 16 15 14 18 18 C 1.39944 * 120.00408 * 28.93680 * 16 15 14 19 19 N 1.30825 * 119.99253 * 10.34594 * 18 16 15 20 20 Si 1.86795 * 120.00424 * 190.34530 * 18 16 15 21 21 H 1.48509 * 109.47028 * 359.97438 * 20 18 16 22 22 H 1.48499 * 109.47169 * 119.99841 * 20 18 16 23 23 H 1.48497 * 109.47240 * 239.99918 * 20 18 16 24 24 C 1.40720 * 119.51262 * 359.71017 * 15 14 13 25 25 C 1.37616 * 119.74250 * 359.97438 * 24 15 14 26 26 H 1.08999 * 109.47145 * 299.99579 * 1 2 3 27 27 H 1.08997 * 109.47851 * 60.00032 * 1 2 3 28 28 H 1.09004 * 109.47107 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47371 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.47501 * 299.99851 * 4 3 2 31 31 H 1.09008 * 109.47245 * 60.00070 * 4 3 2 32 32 H 1.09001 * 109.46898 * 307.54297 * 5 3 2 33 33 H 1.09001 * 109.47086 * 67.53218 * 5 3 2 34 34 H 1.08992 * 109.47583 * 187.53826 * 5 3 2 35 35 H 1.09002 * 109.47125 * 173.69095 * 6 3 2 36 36 H 1.08995 * 109.47275 * 53.68799 * 6 3 2 37 37 H 1.09003 * 109.47467 * 265.34151 * 8 7 6 38 38 H 1.09000 * 109.47354 * 25.34041 * 8 7 6 39 39 H 1.09002 * 109.47464 * 145.34042 * 8 7 6 40 40 H 1.08002 * 119.87693 * 359.97438 * 13 12 9 41 41 H 1.07991 * 120.13150 * 180.27536 * 14 13 12 42 42 H 0.97006 * 119.99656 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.12976 * 179.97438 * 24 15 14 44 44 H 1.08004 * 119.87680 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2492 6 6 3.5354 1.1846 -0.0006 7 7 3.9789 0.5927 1.2639 8 6 3.7583 -0.8322 1.5229 9 16 4.7295 1.5343 2.4007 10 8 4.3187 2.8712 2.1491 11 8 4.5383 0.8845 3.6499 12 6 6.4588 1.4744 2.0682 13 6 7.2407 0.4977 2.6655 14 6 8.5914 0.4378 2.4087 15 6 9.1803 1.3802 1.5455 16 6 10.5682 1.3326 1.2794 17 1 11.1032 2.2392 1.0380 18 6 11.2487 0.1107 1.3288 19 7 10.5774 -1.0085 1.4193 20 14 13.1153 0.0779 1.2656 21 1 13.6316 1.4667 1.1638 22 1 13.6413 -0.5570 2.5007 23 1 13.5568 -0.7019 0.0815 24 6 8.3779 2.3706 0.9493 25 6 7.0283 2.4074 1.2155 26 1 -0.3633 0.5138 0.8900 27 1 -0.3635 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 2.0024 3.0603 1.2494 30 1 0.4722 2.1508 1.2493 31 1 1.8804 1.5237 2.1392 32 1 1.7607 1.4611 -2.1341 33 1 0.4897 2.2679 -1.1844 34 1 2.1039 3.0059 -1.3192 35 1 3.9782 2.1742 -0.1136 36 1 3.8492 0.5495 -0.8289 37 1 2.8315 -0.9607 2.0820 38 1 3.6883 -1.3671 0.5757 39 1 4.5910 -1.2292 2.1036 40 1 6.7875 -0.2214 3.3317 41 1 9.1979 -0.3266 2.8716 42 1 11.0491 -1.8555 1.4539 43 1 8.8196 3.0991 0.2855 44 1 6.4103 3.1664 0.7588 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404308828.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:43 Heat of formation + Delta-G solvation = -123.876855 kcal Electronic energy + Delta-G solvation = -26851.590163 eV Core-core repulsion = 23087.994934 eV Total energy + Delta-G solvation = -3763.595229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.17746 -39.39450 -38.18419 -36.88193 -36.69389 -35.76752 -33.42093 -32.05112 -31.31448 -28.74645 -28.28142 -27.65125 -27.53337 -25.31135 -23.26424 -22.96836 -20.94330 -19.91951 -19.42102 -18.75502 -18.26524 -17.34783 -17.11994 -17.00078 -16.48825 -16.05446 -15.83553 -15.54039 -15.12491 -14.99804 -14.69260 -14.12581 -14.05618 -13.93361 -13.90820 -13.79361 -13.61822 -13.43499 -13.12575 -13.06533 -12.90839 -12.88102 -12.80250 -12.64980 -12.58032 -12.54555 -12.35608 -12.14353 -11.94328 -11.58145 -11.54627 -11.32998 -11.26025 -10.43926 -9.90799 -9.71855 -9.55513 -8.80730 -6.65995 -0.35721 0.46042 1.03631 1.36958 1.41861 1.53159 2.12699 2.17673 2.55409 2.87925 2.93643 3.48370 3.50788 3.75461 3.85321 4.05570 4.15585 4.27595 4.31109 4.49746 4.55798 4.59111 4.68253 4.70434 4.74143 4.81595 4.86166 4.90720 4.93414 4.95683 5.04012 5.09353 5.10064 5.15643 5.22569 5.23168 5.33782 5.52388 5.57098 5.68144 5.78263 5.94412 6.15478 6.38626 6.49915 6.69423 6.80082 8.13471 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.023657 B = 0.003204 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.288322 B = 8738.327036 C = 8824.130900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.388 6.388 3 C 0.098 3.902 4 C -0.184 4.184 5 C -0.172 4.172 6 C 0.129 3.871 7 N -0.994 5.994 8 C 0.106 3.894 9 S 2.714 3.286 10 O -0.985 6.985 11 O -1.004 7.004 12 C -0.794 4.794 13 C -0.026 4.026 14 C -0.200 4.200 15 C 0.112 3.888 16 C -0.469 4.469 17 H 0.091 0.909 18 C 0.031 3.969 19 N -0.806 5.806 20 Si 0.994 3.006 21 H -0.254 1.254 22 H -0.263 1.263 23 H -0.262 1.262 24 C -0.251 4.251 25 C -0.004 4.004 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.111 0.889 41 H 0.112 0.888 42 H 0.296 0.704 43 H 0.115 0.885 44 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.678 0.376 -6.073 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.308 6.308 3 C 0.057 3.943 4 C -0.241 4.241 5 C -0.230 4.230 6 C 0.003 3.997 7 N -0.831 5.831 8 C -0.039 4.039 9 S 2.811 3.189 10 O -0.976 6.976 11 O -0.995 6.995 12 C -0.887 4.887 13 C -0.046 4.046 14 C -0.220 4.220 15 C 0.108 3.892 16 C -0.497 4.497 17 H 0.109 0.891 18 C -0.187 4.187 19 N -0.430 5.430 20 Si 0.814 3.186 21 H -0.177 1.177 22 H -0.188 1.188 23 H -0.187 1.187 24 C -0.271 4.271 25 C -0.024 4.024 26 H 0.060 0.940 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.133 0.867 44 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.998 0.374 -5.397 15.007 hybrid contribution 1.284 -0.299 -0.086 1.321 sum -12.714 0.075 -5.483 13.846 Atomic orbital electron populations 1.22919 0.80676 1.03385 1.00693 1.87957 1.20579 1.27137 1.95129 1.21903 0.93279 0.83806 0.95284 1.22498 1.02649 1.01369 0.97624 1.22339 1.02813 1.01175 0.96689 1.21584 0.92385 0.99998 0.85707 1.57231 1.73168 1.20637 1.32064 1.21410 1.00690 0.78972 1.02804 1.00766 0.73282 0.72394 0.72479 1.93447 1.82462 1.35969 1.85713 1.93444 1.86762 1.76945 1.42318 1.29840 1.23778 1.12399 1.22659 1.20478 0.94374 0.94617 0.95146 1.21403 0.94483 1.03413 1.02697 1.18240 0.93930 0.90101 0.86906 1.20225 0.93593 0.95662 1.40178 0.89097 1.26995 1.06670 0.94070 0.90956 1.69841 1.40697 0.99908 1.32564 0.84964 0.74452 0.80042 0.79183 1.17742 1.18788 1.18661 1.21360 0.93998 1.04768 1.07013 1.20492 0.95257 0.94142 0.92474 0.93957 0.92580 0.88873 0.90714 0.90309 0.94626 0.90745 0.90676 0.90486 0.88042 0.88781 0.92318 0.89109 0.92766 0.87094 0.87014 0.89285 0.86699 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.21 113.37 1.16 1.47 16 2 O -0.39 -8.67 9.09 -148.98 -1.35 -10.03 16 3 C 0.10 2.20 0.90 -10.80 -0.01 2.19 16 4 C -0.18 -4.53 7.12 71.98 0.51 -4.02 16 5 C -0.17 -2.84 8.02 71.98 0.58 -2.26 16 6 C 0.13 3.34 4.82 86.38 0.42 3.76 16 7 N -0.99 -31.12 2.32 -539.13 -1.25 -32.37 16 8 C 0.11 3.04 9.02 127.77 1.15 4.19 16 9 S 2.71 105.44 5.01 -56.49 -0.28 105.15 16 10 O -0.99 -38.82 14.48 -128.00 -1.85 -40.68 16 11 O -1.00 -43.98 16.42 -128.00 -2.10 -46.08 16 12 C -0.79 -35.48 6.00 22.46 0.13 -35.35 16 13 C -0.03 -1.26 9.49 22.22 0.21 -1.05 16 14 C -0.20 -10.46 8.66 22.73 0.20 -10.26 16 15 C 0.11 5.84 5.55 -21.29 -0.12 5.73 16 16 C -0.47 -23.65 9.06 23.46 0.21 -23.43 16 17 H 0.09 4.33 7.87 -2.91 -0.02 4.30 16 18 C 0.03 1.44 5.26 85.26 0.45 1.89 16 19 N -0.81 -39.40 10.83 21.83 0.24 -39.16 16 20 Si 0.99 35.06 29.57 68.60 2.03 37.09 16 21 H -0.25 -8.73 7.11 99.48 0.71 -8.02 16 22 H -0.26 -8.99 7.11 99.48 0.71 -8.29 16 23 H -0.26 -8.82 7.11 99.48 0.71 -8.12 16 24 C -0.25 -11.97 9.80 22.73 0.22 -11.75 16 25 C 0.00 -0.17 9.49 22.22 0.21 0.04 16 26 H 0.04 0.67 6.42 -2.39 -0.02 0.65 16 27 H 0.06 0.72 6.59 -2.39 -0.02 0.70 16 28 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 29 H 0.07 1.96 7.39 -2.39 -0.02 1.94 16 30 H 0.08 1.55 6.54 -2.39 -0.02 1.53 16 31 H 0.03 1.02 7.04 -2.38 -0.02 1.00 16 32 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.07 1.02 6.96 -2.39 -0.02 1.00 16 34 H 0.08 1.21 8.12 -2.39 -0.02 1.19 16 35 H 0.10 2.58 7.19 -2.39 -0.02 2.57 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.06 1.60 8.12 -2.39 -0.02 1.58 16 38 H 0.09 2.23 8.03 -2.39 -0.02 2.21 16 39 H 0.05 1.64 7.96 -2.39 -0.02 1.62 16 40 H 0.11 5.02 7.59 -2.91 -0.02 5.00 16 41 H 0.11 6.01 6.22 -2.92 -0.02 5.99 16 42 H 0.30 12.87 8.30 -92.70 -0.77 12.10 16 43 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 44 H 0.13 4.93 7.60 -2.91 -0.02 4.91 16 Total: -1.00 -63.35 362.86 1.74 -61.61 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: 0.99 Total: 33.33 kcal Atomic # 6 Polarization: -74.19 SS G_CDS: 5.33 Total: -68.87 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.02 Total: -71.53 kcal Atomic # 8 Polarization: -91.47 SS G_CDS: -5.31 Total: -96.78 kcal Atomic # 14 Polarization: 35.06 SS G_CDS: 2.03 Total: 37.09 kcal Atomic # 16 Polarization: 105.44 SS G_CDS: -0.28 Total: 105.15 kcal Total: -63.35 1.74 -61.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404308828.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.271 kcal (2) G-P(sol) polarization free energy of solvation -63.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds