Wall clock time and date at job start Tue Mar 31 2020 14:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99703 * 2 1 4 4 C 1.53004 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46829 * 65.00220 * 4 3 2 6 6 C 1.36936 * 120.00171 * 301.44796 * 5 4 3 7 7 H 1.08010 * 119.99739 * 7.46796 * 6 5 4 8 8 C 1.38810 * 120.00613 * 187.46834 * 6 5 4 9 9 N 1.31622 * 119.99446 * 25.13636 * 8 6 5 10 10 Si 1.86791 * 120.00287 * 205.14291 * 8 6 5 11 11 H 1.48497 * 109.47271 * 59.99452 * 10 8 6 12 12 H 1.48500 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47224 * 299.99502 * 10 8 6 14 14 S 1.65597 * 120.00078 * 121.72694 * 5 4 3 15 15 O 1.42099 * 106.40530 * 212.10917 * 14 5 4 16 16 O 1.42099 * 106.40487 * 345.03082 * 14 5 4 17 17 C 1.76203 * 107.21987 * 98.56841 * 14 5 4 18 18 C 1.38260 * 120.00079 * 113.73986 * 17 14 5 19 19 C 1.38210 * 119.99922 * 179.97438 * 18 17 14 20 20 C 1.38263 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.38210 * 119.99918 * 359.97366 * 20 19 18 22 22 C 1.38213 * 120.00049 * 293.46951 * 17 14 5 23 23 C 1.50706 * 119.99944 * 359.97438 * 22 17 14 24 24 C 1.53004 * 109.46974 * 117.66893 * 23 22 17 25 25 C 1.52992 * 109.47207 * 237.66771 * 23 22 17 26 26 H 1.08994 * 109.47033 * 59.99656 * 1 2 3 27 27 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46712 * 299.99682 * 1 2 3 29 29 H 1.09001 * 109.47191 * 60.00537 * 3 2 1 30 30 H 1.08995 * 109.47619 * 300.00193 * 3 2 1 31 31 H 1.09004 * 109.47043 * 305.00115 * 4 3 2 32 32 H 1.09004 * 109.47090 * 184.99874 * 4 3 2 33 33 H 0.97005 * 119.99775 * 188.59049 * 9 8 6 34 34 H 1.07996 * 119.99783 * 0.02562 * 18 17 14 35 35 H 1.08003 * 119.99786 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.99625 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.99815 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46831 * 357.66861 * 23 22 17 39 39 H 1.08994 * 109.47452 * 59.99571 * 24 23 22 40 40 H 1.08995 * 109.46873 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46897 * 299.99867 * 24 23 22 42 42 H 1.09001 * 109.47010 * 300.00261 * 25 23 22 43 43 H 1.08994 * 109.47203 * 59.99809 * 25 23 22 44 44 H 1.08994 * 109.46968 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 3.5207 -0.6802 -1.5973 7 1 2.7475 -1.1541 -1.0106 8 6 4.0531 -1.3332 -2.7004 9 7 5.2679 -1.0413 -3.1148 10 14 3.0458 -2.6258 -3.5969 11 1 1.7968 -2.0101 -4.1127 12 1 3.8347 -3.1690 -4.7317 13 1 2.7048 -3.7257 -2.6592 14 16 5.0287 1.3659 -2.2483 15 8 4.7016 0.9768 -3.5752 16 8 5.0390 2.7194 -1.8155 17 6 6.6393 0.7282 -1.9255 18 6 7.3077 0.0121 -2.9013 19 6 8.5712 -0.4876 -2.6483 20 6 9.1666 -0.2719 -1.4192 21 6 8.4985 0.4440 -0.4438 22 6 7.2368 0.9486 -0.6989 23 6 6.5111 1.7349 0.3624 24 6 6.2687 0.8429 1.5817 25 6 7.3586 2.9406 0.7730 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1766 0.0889 33 1 5.5939 -1.4025 -3.9541 34 1 6.8427 -0.1560 -3.8614 35 1 9.0931 -1.0473 -3.4104 36 1 10.1538 -0.6627 -1.2214 37 1 8.9634 0.6121 0.5164 38 1 5.5550 2.0799 -0.0312 39 1 7.2247 0.4977 1.9752 40 1 5.7434 1.4114 2.3491 41 1 5.6648 -0.0161 1.2891 42 1 8.3147 2.5955 1.1665 43 1 7.5313 3.5760 -0.0956 44 1 6.8339 3.5089 1.5409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414452460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:01 Heat of formation + Delta-G solvation = -38.838479 kcal Electronic energy + Delta-G solvation = -28804.814909 eV Core-core repulsion = 25044.907221 eV Total energy + Delta-G solvation = -3759.907688 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -38.75859 -37.60553 -36.27664 -35.38845 -34.42656 -34.13450 -31.80824 -30.14449 -29.11262 -28.47329 -26.76255 -25.95432 -24.28817 -22.86982 -22.16113 -21.58432 -19.51113 -18.92873 -17.45586 -16.29860 -15.99922 -15.85253 -15.31821 -15.12130 -14.95423 -14.37563 -14.22500 -13.84455 -13.64978 -13.28527 -13.11525 -12.98881 -12.90218 -12.37341 -11.98588 -11.91529 -11.69755 -11.60323 -11.51932 -11.34342 -11.18299 -11.02932 -10.98763 -10.86363 -10.65911 -10.52501 -10.34576 -10.11423 -10.09528 -9.85303 -9.62790 -9.38218 -8.95389 -8.90619 -8.27912 -7.91140 -7.49772 -6.14772 -3.64793 1.84726 2.17526 2.34797 3.37428 3.44416 3.48016 4.23764 4.35277 4.51084 4.73835 5.14972 5.20728 5.27134 5.32729 5.54706 5.65060 5.65418 5.70365 5.71616 5.80655 5.83745 5.86186 5.89398 5.98896 5.99967 6.02557 6.13640 6.18086 6.20313 6.38611 6.42921 6.44268 6.57732 6.71026 6.74969 6.77825 6.94498 7.13659 7.23162 7.30196 7.46056 7.74745 7.85886 7.92667 8.58577 9.08232 9.51432 10.79307 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.007760 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.018590 B = 3607.166803 C = 4916.195133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.363 6.363 3 C 0.061 3.939 4 C 0.108 3.892 5 N -0.848 5.848 6 C -0.270 4.270 7 H 0.120 0.880 8 C 0.009 3.991 9 N -0.884 5.884 10 Si 0.938 3.062 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.283 1.283 14 S 2.683 3.317 15 O -0.937 6.937 16 O -1.024 7.024 17 C -0.612 4.612 18 C 0.070 3.930 19 C -0.187 4.187 20 C -0.085 4.085 21 C -0.167 4.167 22 C 0.006 3.994 23 C -0.097 4.097 24 C -0.144 4.144 25 C -0.134 4.134 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.029 0.971 29 H 0.043 0.957 30 H 0.049 0.951 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.280 0.720 34 H 0.148 0.852 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.050 0.950 43 H 0.058 0.942 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 3.205 6.699 7.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.281 6.281 3 C -0.018 4.018 4 C -0.019 4.019 5 N -0.677 5.677 6 C -0.403 4.403 7 H 0.137 0.863 8 C -0.191 4.191 9 N -0.530 5.530 10 Si 0.766 3.234 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.209 1.209 14 S 2.774 3.226 15 O -0.927 6.927 16 O -1.013 7.013 17 C -0.696 4.696 18 C 0.049 3.951 19 C -0.207 4.207 20 C -0.103 4.103 21 C -0.186 4.186 22 C 0.004 3.996 23 C -0.115 4.115 24 C -0.201 4.201 25 C -0.191 4.191 26 H 0.055 0.945 27 H 0.097 0.903 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.166 0.834 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.127 0.873 38 H 0.118 0.882 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.675 3.570 6.031 7.041 hybrid contribution 0.131 -1.178 -0.039 1.186 sum 0.806 2.392 5.992 6.502 Atomic orbital electron populations 1.22668 0.83153 1.01992 0.99002 1.88120 1.17754 1.27254 1.95005 1.22829 0.94862 0.85011 0.99097 1.21527 0.92606 0.98458 0.89347 1.53945 1.53162 1.28857 1.31782 1.19691 1.15688 0.93801 1.11083 0.86276 1.25018 0.95643 0.99483 0.98977 1.69857 1.12720 1.48157 1.22309 0.85792 0.79548 0.79335 0.78707 1.20590 1.21506 1.20921 1.02330 0.73572 0.71461 0.75242 1.93510 1.81902 1.81917 1.35336 1.93383 1.88238 1.36244 1.83452 1.31214 1.24717 1.13549 1.00085 1.21098 0.88949 0.85556 0.99448 1.21195 0.97115 1.04945 0.97448 1.21031 0.98425 0.96991 0.93868 1.20680 0.95951 1.02926 0.99001 1.19386 0.93591 0.93644 0.92936 1.20834 1.00771 0.95100 0.94843 1.21927 1.01644 0.99993 0.96571 1.21726 0.99011 0.97175 1.01174 0.94506 0.90323 0.95201 0.93879 0.93287 0.91837 0.88741 0.90650 0.83424 0.87289 0.87578 0.87340 0.88232 0.92954 0.92613 0.91455 0.93113 0.92275 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.36 -6.72 7.82 -35.23 -0.28 -7.00 16 3 C 0.06 1.06 6.16 37.16 0.23 1.29 16 4 C 0.11 2.08 4.70 -4.04 -0.02 2.06 16 5 N -0.85 -19.83 3.07 -59.90 -0.18 -20.02 16 6 C -0.27 -6.79 8.96 -15.06 -0.13 -6.93 16 7 H 0.12 2.96 5.61 -52.48 -0.29 2.66 16 8 C 0.01 0.24 4.34 -17.43 -0.08 0.16 16 9 N -0.88 -23.01 4.98 55.49 0.28 -22.74 16 10 Si 0.94 21.66 29.63 -169.99 -5.04 16.62 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 14 S 2.68 65.88 4.48 -107.50 -0.48 65.40 16 15 O -0.94 -25.71 13.41 -57.17 -0.77 -26.47 16 16 O -1.02 -24.82 14.53 -57.17 -0.83 -25.65 16 17 C -0.61 -14.14 5.17 -39.58 -0.20 -14.34 16 18 C 0.07 1.57 7.34 -39.58 -0.29 1.28 16 19 C -0.19 -3.65 10.05 -39.58 -0.40 -4.05 16 20 C -0.08 -1.53 10.05 -39.58 -0.40 -1.93 16 21 C -0.17 -3.09 8.72 -39.58 -0.35 -3.43 16 22 C 0.01 0.12 4.78 -104.62 -0.50 -0.38 16 23 C -0.10 -1.77 2.39 -91.77 -0.22 -1.99 16 24 C -0.14 -2.28 7.92 37.16 0.29 -1.99 16 25 C -0.13 -2.08 8.98 37.15 0.33 -1.74 16 26 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 28 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 29 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.06 1.16 6.09 -51.93 -0.32 0.85 16 32 H 0.09 1.73 5.14 -51.93 -0.27 1.46 16 33 H 0.28 7.14 7.28 -40.82 -0.30 6.85 16 34 H 0.15 3.44 5.37 -52.49 -0.28 3.15 16 35 H 0.11 1.84 8.06 -52.48 -0.42 1.41 16 36 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.11 1.72 7.10 -52.49 -0.37 1.35 16 38 H 0.10 1.96 1.57 -51.76 -0.08 1.88 16 39 H 0.05 0.76 7.51 -51.93 -0.39 0.37 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.18 6.90 -51.93 -0.36 0.82 16 42 H 0.05 0.70 7.27 -51.93 -0.38 0.32 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 340.91 15.07 5.14 5.14 Total: -1.00 -30.04 340.91 -8.84 -38.87 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.06 Total: 6.30 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -0.61 Total: -30.46 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.09 Total: -42.75 kcal Atomic # 8 Polarization: -57.25 SS G_CDS: -1.87 Total: -59.12 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.04 Total: 16.62 kcal Atomic # 16 Polarization: 65.88 SS G_CDS: -0.48 Total: 65.40 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.04 -8.84 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414452460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.036 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds