Wall clock time and date at job start Tue Mar 31 2020 14:44:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 113.99703 * 2 1 4 4 C 1.53004 * 109.46969 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46829 * 65.00220 * 4 3 2 6 6 C 1.36936 * 120.00171 * 301.44796 * 5 4 3 7 7 H 1.08010 * 119.99739 * 7.46796 * 6 5 4 8 8 C 1.38810 * 120.00613 * 187.46834 * 6 5 4 9 9 N 1.31622 * 119.99446 * 25.13636 * 8 6 5 10 10 Si 1.86791 * 120.00287 * 205.14291 * 8 6 5 11 11 H 1.48497 * 109.47271 * 59.99452 * 10 8 6 12 12 H 1.48500 * 109.47477 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.47224 * 299.99502 * 10 8 6 14 14 S 1.65597 * 120.00078 * 121.72694 * 5 4 3 15 15 O 1.42099 * 106.40530 * 212.10917 * 14 5 4 16 16 O 1.42099 * 106.40487 * 345.03082 * 14 5 4 17 17 C 1.76203 * 107.21987 * 98.56841 * 14 5 4 18 18 C 1.38260 * 120.00079 * 113.73986 * 17 14 5 19 19 C 1.38210 * 119.99922 * 179.97438 * 18 17 14 20 20 C 1.38263 * 120.00070 * 0.02562 * 19 18 17 21 21 C 1.38210 * 119.99918 * 359.97366 * 20 19 18 22 22 C 1.38213 * 120.00049 * 293.46951 * 17 14 5 23 23 C 1.50706 * 119.99944 * 359.97438 * 22 17 14 24 24 C 1.53004 * 109.46974 * 117.66893 * 23 22 17 25 25 C 1.52992 * 109.47207 * 237.66771 * 23 22 17 26 26 H 1.08994 * 109.47033 * 59.99656 * 1 2 3 27 27 H 1.08997 * 109.47158 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46712 * 299.99682 * 1 2 3 29 29 H 1.09001 * 109.47191 * 60.00537 * 3 2 1 30 30 H 1.08995 * 109.47619 * 300.00193 * 3 2 1 31 31 H 1.09004 * 109.47043 * 305.00115 * 4 3 2 32 32 H 1.09004 * 109.47090 * 184.99874 * 4 3 2 33 33 H 0.97005 * 119.99775 * 188.59049 * 9 8 6 34 34 H 1.07996 * 119.99783 * 0.02562 * 18 17 14 35 35 H 1.08003 * 119.99786 * 179.97438 * 19 18 17 36 36 H 1.08000 * 119.99625 * 179.97438 * 20 19 18 37 37 H 1.07998 * 119.99815 * 179.97438 * 21 20 19 38 38 H 1.08999 * 109.46831 * 357.66861 * 23 22 17 39 39 H 1.08994 * 109.47452 * 59.99571 * 24 23 22 40 40 H 1.08995 * 109.46873 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.46897 * 299.99867 * 24 23 22 42 42 H 1.09001 * 109.47010 * 300.00261 * 25 23 22 43 43 H 1.08994 * 109.47203 * 59.99809 * 25 23 22 44 44 H 1.08994 * 109.46968 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2528 6 6 3.5207 -0.6802 -1.5973 7 1 2.7475 -1.1541 -1.0106 8 6 4.0531 -1.3332 -2.7004 9 7 5.2679 -1.0413 -3.1148 10 14 3.0458 -2.6258 -3.5969 11 1 1.7968 -2.0101 -4.1127 12 1 3.8347 -3.1690 -4.7317 13 1 2.7048 -3.7257 -2.6592 14 16 5.0287 1.3659 -2.2483 15 8 4.7016 0.9768 -3.5752 16 8 5.0390 2.7194 -1.8155 17 6 6.6393 0.7282 -1.9255 18 6 7.3077 0.0121 -2.9013 19 6 8.5712 -0.4876 -2.6483 20 6 9.1666 -0.2719 -1.4192 21 6 8.4985 0.4440 -0.4438 22 6 7.2368 0.9486 -0.6989 23 6 6.5111 1.7349 0.3624 24 6 6.2687 0.8429 1.5817 25 6 7.3586 2.9406 0.7730 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8465 -0.8899 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1766 0.0889 33 1 5.5939 -1.4025 -3.9541 34 1 6.8427 -0.1560 -3.8614 35 1 9.0931 -1.0473 -3.4104 36 1 10.1538 -0.6627 -1.2214 37 1 8.9634 0.6121 0.5164 38 1 5.5550 2.0799 -0.0312 39 1 7.2247 0.4977 1.9752 40 1 5.7434 1.4114 2.3491 41 1 5.6648 -0.0161 1.2891 42 1 8.3147 2.5955 1.1665 43 1 7.5313 3.5760 -0.0956 44 1 6.8339 3.5089 1.5409 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414452460.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:00 Heat of formation + Delta-G solvation = -57.239559 kcal Electronic energy + Delta-G solvation = -28805.612840 eV Core-core repulsion = 25044.907221 eV Total energy + Delta-G solvation = -3760.705619 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -40.26100 -39.01759 -38.13776 -36.99527 -36.22936 -35.80745 -33.58207 -31.71469 -30.61210 -29.98879 -27.96175 -27.27767 -25.96928 -24.32537 -23.74127 -23.11820 -20.99806 -20.71617 -19.19308 -18.00557 -17.68392 -17.24009 -16.91434 -16.75233 -16.39610 -15.93147 -15.75619 -15.55849 -15.11395 -14.85316 -14.61183 -14.43245 -14.32341 -13.85315 -13.66059 -13.27439 -13.25980 -13.16677 -12.96270 -12.80064 -12.73723 -12.65511 -12.59894 -12.45722 -12.29162 -12.12182 -11.98869 -11.90749 -11.65233 -11.37682 -11.27972 -11.02910 -10.63416 -10.30655 -9.88657 -9.53514 -9.27372 -8.00742 -5.56279 0.15433 0.46336 0.79905 1.49357 1.57057 1.61163 2.44441 2.79902 2.99571 3.06919 3.29553 3.50781 3.83908 3.89991 4.16106 4.27540 4.32170 4.35575 4.40373 4.45972 4.47722 4.58746 4.61208 4.65624 4.68519 4.77404 4.88114 4.91662 4.94562 5.02547 5.04439 5.13322 5.20932 5.23044 5.36201 5.41378 5.49466 5.52115 5.71683 5.75865 5.84112 5.97285 6.35502 6.48610 6.68448 7.24838 7.61768 8.88574 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012087 B = 0.007760 C = 0.005694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.018590 B = 3607.166803 C = 4916.195133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.394 6.394 3 C 0.059 3.941 4 C 0.103 3.897 5 N -0.860 5.860 6 C -0.281 4.281 7 H 0.120 0.880 8 C -0.037 4.037 9 N -0.895 5.895 10 Si 0.974 3.026 11 H -0.287 1.287 12 H -0.294 1.294 13 H -0.271 1.271 14 S 2.697 3.303 15 O -0.982 6.982 16 O -1.031 7.031 17 C -0.638 4.638 18 C 0.047 3.953 19 C -0.194 4.194 20 C -0.075 4.075 21 C -0.167 4.167 22 C -0.004 4.004 23 C -0.106 4.106 24 C -0.138 4.138 25 C -0.131 4.131 26 H 0.035 0.965 27 H 0.088 0.912 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.035 0.965 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.272 0.728 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.144 0.856 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.072 0.928 43 H 0.040 0.960 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.936 3.344 9.520 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.313 6.313 3 C -0.020 4.020 4 C -0.023 4.023 5 N -0.691 5.691 6 C -0.412 4.412 7 H 0.137 0.863 8 C -0.235 4.235 9 N -0.542 5.542 10 Si 0.802 3.198 11 H -0.214 1.214 12 H -0.221 1.221 13 H -0.197 1.197 14 S 2.791 3.209 15 O -0.971 6.971 16 O -1.020 7.020 17 C -0.726 4.726 18 C 0.026 3.974 19 C -0.214 4.214 20 C -0.093 4.093 21 C -0.186 4.186 22 C -0.005 4.005 23 C -0.124 4.124 24 C -0.195 4.195 25 C -0.188 4.188 26 H 0.053 0.947 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.144 0.856 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.162 0.838 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.062 0.938 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.944 3.702 8.860 9.798 hybrid contribution -0.202 -1.106 -0.852 1.410 sum 1.743 2.596 8.009 8.597 Atomic orbital electron populations 1.22863 0.81057 1.03119 1.00262 1.88043 1.20121 1.27851 1.95263 1.22865 0.93646 0.85072 1.00379 1.21767 0.94034 0.98615 0.87871 1.53469 1.54897 1.27898 1.32814 1.19690 1.16324 0.93487 1.11717 0.86275 1.25645 0.96507 1.01281 1.00029 1.70013 1.13048 1.49099 1.22060 0.85225 0.78207 0.78379 0.77997 1.21414 1.22058 1.19688 1.01036 0.74487 0.71076 0.74309 1.93469 1.83066 1.82457 1.38144 1.93369 1.88704 1.36489 1.83481 1.30747 1.23786 1.15946 1.02082 1.21026 0.90617 0.86931 0.98786 1.21464 0.96084 1.04711 0.99120 1.21533 0.99840 0.95325 0.92598 1.21104 0.95004 1.01876 1.00590 1.19802 0.94711 0.93637 0.92386 1.20943 1.00075 0.96277 0.95094 1.21884 1.02523 0.98993 0.96095 1.21736 0.99948 0.95978 1.01185 0.94681 0.89382 0.92409 0.89815 0.94639 0.90708 0.87990 0.91587 0.85614 0.84991 0.83310 0.83816 0.90236 0.91218 0.89887 0.93847 0.90917 0.94060 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 11.01 113.37 1.25 1.88 16 2 O -0.39 -14.32 7.82 -148.98 -1.16 -15.49 16 3 C 0.06 2.00 6.16 71.98 0.44 2.44 16 4 C 0.10 3.94 4.70 86.38 0.41 4.35 16 5 N -0.86 -41.04 3.07 -343.43 -1.06 -42.10 16 6 C -0.28 -14.53 8.96 84.03 0.75 -13.78 16 7 H 0.12 6.04 5.61 -2.91 -0.02 6.03 16 8 C -0.04 -1.98 4.34 84.86 0.37 -1.61 16 9 N -0.90 -48.62 4.98 21.65 0.11 -48.51 16 10 Si 0.97 45.63 29.63 68.60 2.03 47.66 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 12 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 13 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 14 S 2.70 136.81 4.48 -56.49 -0.25 136.56 16 15 O -0.98 -56.82 13.41 -128.00 -1.72 -58.54 16 16 O -1.03 -51.11 14.53 -128.00 -1.86 -52.97 16 17 C -0.64 -29.83 5.17 22.27 0.12 -29.71 16 18 C 0.05 2.16 7.34 22.27 0.16 2.32 16 19 C -0.19 -7.32 10.05 22.27 0.22 -7.09 16 20 C -0.07 -2.44 10.05 22.27 0.22 -2.21 16 21 C -0.17 -5.61 8.72 22.27 0.19 -5.41 16 22 C 0.00 -0.14 4.78 -19.86 -0.09 -0.24 16 23 C -0.11 -3.62 2.39 -11.54 -0.03 -3.65 16 24 C -0.14 -3.94 7.92 71.98 0.57 -3.37 16 25 C -0.13 -3.67 8.98 71.98 0.65 -3.02 16 26 H 0.03 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 2.68 6.09 -2.39 -0.01 2.66 16 32 H 0.10 3.68 5.14 -2.38 -0.01 3.67 16 33 H 0.27 14.66 7.28 -92.70 -0.67 13.98 16 34 H 0.13 6.22 5.37 -2.91 -0.02 6.20 16 35 H 0.13 4.23 8.06 -2.91 -0.02 4.20 16 36 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 37 H 0.14 3.78 7.10 -2.91 -0.02 3.76 16 38 H 0.08 3.05 1.57 -2.50 0.00 3.05 16 39 H 0.07 1.73 7.51 -2.39 -0.02 1.71 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.04 1.44 6.90 -2.39 -0.02 1.43 16 42 H 0.07 1.69 7.27 -2.39 -0.02 1.67 16 43 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -67.81 340.91 2.43 -65.38 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 1.11 Total: 27.11 kcal Atomic # 6 Polarization: -64.35 SS G_CDS: 5.23 Total: -59.11 kcal Atomic # 7 Polarization: -89.66 SS G_CDS: -0.95 Total: -90.61 kcal Atomic # 8 Polarization: -122.25 SS G_CDS: -4.74 Total: -127.00 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Atomic # 16 Polarization: 136.81 SS G_CDS: -0.25 Total: 136.56 kcal Total: -67.81 2.43 -65.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414452460.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.139 kcal (2) G-P(sol) polarization free energy of solvation -67.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds