Wall clock time and date at job start Tue Mar 31 2020 14:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42897 * 114.00011 * 2 1 4 4 C 1.53004 * 109.46748 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46812 * 65.00306 * 4 3 2 6 6 C 1.36931 * 119.99946 * 274.99434 * 5 4 3 7 7 H 1.08002 * 120.00132 * 146.22047 * 6 5 4 8 8 C 1.38818 * 120.00134 * 326.21551 * 6 5 4 9 9 N 1.31617 * 119.99601 * 336.33518 * 8 6 5 10 10 Si 1.86800 * 119.99793 * 156.32979 * 8 6 5 11 11 H 1.48506 * 109.47363 * 0.02562 * 10 8 6 12 12 H 1.48504 * 109.46605 * 120.00237 * 10 8 6 13 13 H 1.48491 * 109.47415 * 240.00029 * 10 8 6 14 14 S 1.65598 * 119.99802 * 95.00103 * 5 4 3 15 15 O 1.42098 * 106.40504 * 341.67889 * 14 5 4 16 16 O 1.42106 * 106.40077 * 208.76312 * 14 5 4 17 17 C 1.76196 * 107.22239 * 95.22508 * 14 5 4 18 18 C 1.38233 * 120.00152 * 89.99753 * 17 14 5 19 19 C 1.38238 * 120.00197 * 179.97438 * 18 17 14 20 20 C 1.38236 * 119.99488 * 0.02562 * 19 18 17 21 21 C 1.50703 * 119.99701 * 179.97438 * 20 19 18 22 22 C 1.52996 * 109.47062 * 239.99995 * 21 20 19 23 23 C 1.52998 * 109.47345 * 120.00051 * 21 20 19 24 24 C 1.38229 * 120.00401 * 0.25588 * 20 19 18 25 25 C 1.38234 * 120.00153 * 359.47122 * 24 20 19 26 26 H 1.08996 * 109.46802 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47010 * 300.00102 * 1 2 3 28 28 H 1.08994 * 109.46520 * 60.00234 * 1 2 3 29 29 H 1.09003 * 109.47195 * 60.00000 * 3 2 1 30 30 H 1.08994 * 109.47263 * 299.99455 * 3 2 1 31 31 H 1.09003 * 109.47596 * 304.99969 * 4 3 2 32 32 H 1.09002 * 109.47087 * 184.99790 * 4 3 2 33 33 H 0.97009 * 119.98995 * 179.97438 * 9 8 6 34 34 H 1.08000 * 120.00085 * 359.97438 * 18 17 14 35 35 H 1.07998 * 119.99969 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47025 * 359.97438 * 21 20 19 37 37 H 1.09003 * 109.47245 * 60.00048 * 22 21 20 38 38 H 1.08999 * 109.47450 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47294 * 300.00033 * 22 21 20 40 40 H 1.08993 * 109.47401 * 59.99813 * 23 21 20 41 41 H 1.09001 * 109.47486 * 180.02562 * 23 21 20 42 42 H 1.09004 * 109.46736 * 299.99925 * 23 21 20 43 43 H 1.08007 * 120.00154 * 179.73061 * 24 20 19 44 44 H 1.07998 * 120.00891 * 180.29727 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.9998 -0.8003 -1.3677 7 1 3.7823 -1.2647 -2.3182 8 6 4.3030 -1.5863 -0.2644 9 7 5.0018 -1.0823 0.7306 10 14 3.7191 -3.3592 -0.1919 11 1 2.9591 -3.6810 -1.4266 12 1 4.8926 -4.2628 -0.0839 13 1 2.8419 -3.5435 0.9919 14 16 4.4474 1.5120 -2.5244 15 8 3.9208 2.8082 -2.2758 16 8 4.1636 0.7707 -3.7031 17 6 6.2010 1.6632 -2.4420 18 6 7.0051 0.7467 -3.0932 19 6 8.3808 0.8656 -3.0290 20 6 8.9524 1.9008 -2.3131 21 6 10.4522 2.0301 -2.2426 22 6 10.9032 1.9462 -0.7830 23 6 10.8761 3.3774 -2.8307 24 6 8.1483 2.8139 -1.6570 25 6 6.7726 2.6984 -1.7259 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6887 1.8464 0.8900 30 1 1.6888 1.8463 -0.8900 31 1 3.8509 0.5683 0.8427 32 1 3.9786 2.1764 0.0902 33 1 5.2133 -1.6316 1.5017 34 1 6.5585 -0.0624 -3.6522 35 1 9.0091 0.1497 -3.5382 36 1 10.9136 1.2233 -2.8121 37 1 10.6012 0.9864 -0.3640 38 1 11.9880 2.0393 -0.7320 39 1 10.4418 2.7527 -0.2132 40 1 10.4148 4.1839 -2.2610 41 1 11.9610 3.4708 -2.7802 42 1 10.5548 3.4371 -3.8706 43 1 8.5950 3.6203 -1.0940 44 1 6.1442 3.4145 -1.2173 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414452569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:05 Heat of formation + Delta-G solvation = -115.705925 kcal Electronic energy + Delta-G solvation = -26999.658485 eV Core-core repulsion = 23236.417574 eV Total energy + Delta-G solvation = -3763.240911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -40.40297 -38.94465 -37.72444 -37.07634 -36.37777 -36.24372 -33.53953 -31.92031 -30.78777 -30.46565 -27.98779 -27.25990 -26.08429 -24.59214 -23.66579 -23.25935 -21.07675 -20.24659 -19.25658 -18.49586 -18.12262 -17.07991 -16.92557 -16.73060 -16.40243 -16.16428 -15.88674 -15.57144 -15.45464 -15.01398 -14.77080 -14.52217 -14.27458 -14.01562 -13.78834 -13.59854 -13.48127 -13.39139 -13.02447 -12.94489 -12.71046 -12.66086 -12.61766 -12.38094 -12.33136 -12.18477 -12.07346 -12.04161 -11.89471 -11.71319 -11.56320 -11.27157 -10.98387 -10.38025 -9.91509 -9.87760 -9.61102 -8.34270 -5.91322 -0.09229 0.16324 0.45061 1.50560 1.56319 1.67358 2.31304 2.55630 2.81299 2.99577 3.15826 3.29194 3.67594 3.71849 3.90785 4.05573 4.21178 4.29709 4.35219 4.39149 4.41343 4.54424 4.56886 4.61820 4.62646 4.67338 4.74892 4.81253 4.90594 4.91193 4.94978 4.98020 5.06185 5.13295 5.28766 5.31817 5.37866 5.38605 5.38947 5.40794 5.63070 5.74422 6.05980 6.45176 6.54751 6.90020 7.36157 8.61888 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015037 B = 0.004562 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.665653 B = 6136.218615 C = 6938.328217 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.390 6.390 3 C 0.056 3.944 4 C 0.118 3.882 5 N -0.800 5.800 6 C -0.239 4.239 7 H 0.090 0.910 8 C 0.023 3.977 9 N -0.840 5.840 10 Si 0.976 3.024 11 H -0.266 1.266 12 H -0.275 1.275 13 H -0.270 1.270 14 S 2.527 3.473 15 O -1.026 7.026 16 O -1.020 7.020 17 C -0.675 4.675 18 C -0.043 4.043 19 C -0.148 4.148 20 C -0.042 4.042 21 C -0.057 4.057 22 C -0.142 4.142 23 C -0.141 4.141 24 C -0.139 4.139 25 C -0.048 4.048 26 H 0.091 0.909 27 H 0.053 0.947 28 H 0.037 0.963 29 H 0.076 0.924 30 H 0.031 0.969 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.280 0.720 34 H 0.119 0.881 35 H 0.146 0.854 36 H 0.089 0.911 37 H 0.044 0.956 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.149 0.851 44 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.880 3.569 2.080 8.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.309 6.309 3 C -0.022 4.022 4 C -0.009 4.009 5 N -0.623 5.623 6 C -0.388 4.388 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.479 5.479 10 Si 0.800 3.200 11 H -0.190 1.190 12 H -0.201 1.201 13 H -0.195 1.195 14 S 2.633 3.367 15 O -1.016 7.016 16 O -1.010 7.010 17 C -0.757 4.757 18 C -0.062 4.062 19 C -0.166 4.166 20 C -0.043 4.043 21 C -0.075 4.075 22 C -0.199 4.199 23 C -0.198 4.198 24 C -0.158 4.158 25 C -0.067 4.067 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.137 0.863 35 H 0.164 0.836 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.166 0.834 44 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.607 4.052 1.462 7.887 hybrid contribution -0.070 -0.545 0.076 0.555 sum 6.536 3.507 1.538 7.576 Atomic orbital electron populations 1.22899 0.81192 1.03198 1.00215 1.88091 1.19869 1.27625 1.95274 1.22963 0.94595 0.84849 0.99836 1.21547 0.91917 0.97852 0.89560 1.53642 1.65685 1.13825 1.29100 1.19667 1.40078 0.80147 0.98934 0.89207 1.26203 0.93607 1.03177 0.95934 1.69993 1.30502 1.38907 1.08501 0.85127 0.78387 0.77389 0.79105 1.18960 1.20107 1.19475 1.11258 0.75356 0.73110 0.76985 1.93260 1.79695 1.42556 1.86112 1.93281 1.85049 1.72374 1.50310 1.31834 1.30462 1.04081 1.09361 1.20928 0.94697 0.95858 0.94747 1.21437 0.94187 0.99605 1.01404 1.20424 0.97106 0.93103 0.93618 1.20275 0.88537 1.00199 0.98540 1.21848 1.02161 1.01773 0.94143 1.21845 1.02291 0.95175 1.00495 1.21291 0.92604 1.00702 1.01169 1.20963 0.96384 0.94839 0.94558 0.89087 0.92805 0.94472 0.90638 0.95046 0.87584 0.90501 0.91029 0.86295 0.83590 0.89301 0.93690 0.90067 0.92366 0.92326 0.90132 0.93151 0.83359 0.85432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.65 11.01 113.37 1.25 1.90 16 2 O -0.39 -15.95 9.94 -148.98 -1.48 -17.43 16 3 C 0.06 2.23 6.28 71.98 0.45 2.69 16 4 C 0.12 5.26 5.43 86.38 0.47 5.73 16 5 N -0.80 -39.65 2.84 -343.43 -0.98 -40.63 16 6 C -0.24 -12.25 8.44 84.04 0.71 -11.55 16 7 H 0.09 4.81 7.46 -2.91 -0.02 4.78 16 8 C 0.02 1.10 4.98 84.86 0.42 1.52 16 9 N -0.84 -40.80 11.29 21.65 0.24 -40.55 16 10 Si 0.98 39.27 29.61 68.60 2.03 41.30 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 12 H -0.28 -10.68 7.11 99.48 0.71 -9.97 16 13 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 14 S 2.53 127.13 5.61 -56.49 -0.32 126.81 16 15 O -1.03 -52.74 16.08 -128.00 -2.06 -54.80 16 16 O -1.02 -56.68 16.28 -128.00 -2.08 -58.76 16 17 C -0.67 -30.64 5.97 22.27 0.13 -30.50 16 18 C -0.04 -1.83 9.52 22.27 0.21 -1.62 16 19 C -0.15 -5.09 9.67 22.27 0.22 -4.88 16 20 C -0.04 -1.29 4.78 -19.87 -0.09 -1.38 16 21 C -0.06 -1.23 3.09 -11.54 -0.04 -1.27 16 22 C -0.14 -2.79 9.00 71.98 0.65 -2.14 16 23 C -0.14 -2.53 9.01 71.98 0.65 -1.89 16 24 C -0.14 -4.55 8.71 22.27 0.19 -4.35 16 25 C -0.05 -1.93 9.52 22.27 0.21 -1.72 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.11 4.97 5.32 -2.39 -0.01 4.96 16 32 H 0.08 3.21 7.46 -2.39 -0.02 3.20 16 33 H 0.28 12.59 8.31 -92.70 -0.77 11.82 16 34 H 0.12 5.18 7.62 -2.91 -0.02 5.15 16 35 H 0.15 4.06 7.95 -2.91 -0.02 4.04 16 36 H 0.09 1.72 7.88 -2.38 -0.02 1.70 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.06 1.14 7.37 -2.39 -0.02 1.12 16 40 H 0.06 1.05 7.40 -2.39 -0.02 1.03 16 41 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.15 3.82 7.10 -2.91 -0.02 3.80 16 44 H 0.13 4.91 7.62 -2.91 -0.02 4.88 16 Total: -1.00 -65.95 373.18 1.78 -64.17 By element: Atomic # 1 Polarization: 28.37 SS G_CDS: 0.98 Total: 29.35 kcal Atomic # 6 Polarization: -54.90 SS G_CDS: 5.43 Total: -49.47 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -0.73 Total: -81.18 kcal Atomic # 8 Polarization: -125.37 SS G_CDS: -5.62 Total: -130.99 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 2.03 Total: 41.30 kcal Atomic # 16 Polarization: 127.13 SS G_CDS: -0.32 Total: 126.81 kcal Total: -65.95 1.78 -64.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414452569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.532 kcal (2) G-P(sol) polarization free energy of solvation -65.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds