Wall clock time and date at job start Tue Mar 31 2020 15:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38220 * 120.00051 * 180.02562 * 5 4 3 7 7 C 1.38255 * 119.99697 * 359.95697 * 6 5 4 8 8 C 1.38217 * 120.00132 * 0.07194 * 7 6 5 9 9 S 1.76199 * 119.99635 * 179.97438 * 8 7 6 10 10 O 1.42098 * 106.40706 * 23.48889 * 9 8 7 11 11 O 1.42109 * 106.40127 * 156.41361 * 9 8 7 12 12 N 1.65600 * 107.21686 * 269.94654 * 9 8 7 13 13 C 1.46508 * 119.99578 * 65.00548 * 12 9 8 14 14 C 1.53002 * 109.46909 * 164.99957 * 13 12 9 15 15 C 1.53002 * 109.47178 * 299.99827 * 14 13 12 16 16 C 1.52998 * 109.47303 * 60.00022 * 14 13 12 17 17 C 1.50695 * 109.47055 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00183 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99903 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00503 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 119.99889 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47035 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47045 * 120.00103 * 21 19 17 24 24 H 1.48500 * 109.46924 * 240.00197 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 26 26 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 28 28 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 29 29 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 30 30 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 31 31 H 1.08002 * 120.00348 * 359.97438 * 5 4 3 32 32 H 1.07999 * 120.00153 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.99804 * 179.97438 * 7 6 5 34 34 H 0.96997 * 120.00670 * 245.00427 * 12 9 8 35 35 H 1.09000 * 109.46980 * 284.99631 * 13 12 9 36 36 H 1.08994 * 109.47042 * 44.99882 * 13 12 9 37 37 H 1.09000 * 109.47011 * 60.00045 * 15 14 13 38 38 H 1.09000 * 109.47239 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47057 * 300.00091 * 15 14 13 40 40 H 1.09000 * 109.47387 * 59.99836 * 16 14 13 41 41 H 1.09001 * 109.47574 * 180.02562 * 16 14 13 42 42 H 1.09002 * 109.46807 * 299.99483 * 16 14 13 43 43 H 0.96996 * 120.00144 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.00164 * 359.72517 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5790 1.0231 1.1989 7 6 6.2686 0.9683 0.0018 8 6 5.5802 1.0236 -1.1955 9 16 6.4592 0.9544 -2.7210 10 8 7.6953 0.3109 -2.4431 11 8 5.5379 0.4809 -3.6938 12 7 6.8279 2.5121 -3.1453 13 6 7.7405 3.3012 -2.3142 14 6 8.2049 4.5327 -3.0944 15 6 8.9296 4.0874 -4.3662 16 6 6.9916 5.3854 -3.4707 17 6 9.1441 5.3441 -2.2397 18 1 9.3854 5.0146 -1.2399 19 6 9.6955 6.5071 -2.7342 20 7 9.4021 6.9081 -3.9519 21 14 10.8592 7.5133 -1.6744 22 1 11.0241 6.8519 -0.3551 23 1 12.1794 7.6136 -2.3469 24 1 10.2986 8.8744 -1.4786 25 6 4.2019 1.1316 -1.1961 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8898 30 1 1.6887 1.8464 -0.8901 31 1 3.6624 1.1747 2.1334 32 1 6.1170 0.9808 2.1344 33 1 7.3453 0.8838 0.0023 34 1 6.4397 2.9020 -3.9441 35 1 7.2243 3.6185 -1.4081 36 1 8.6049 2.6937 -2.0461 37 1 8.2506 3.5002 -4.9845 38 1 9.2608 4.9647 -4.9218 39 1 9.7940 3.4799 -4.0981 40 1 6.4753 5.7027 -2.5647 41 1 7.3223 6.2626 -4.0269 42 1 6.3127 4.7983 -4.0892 43 1 9.7897 7.7265 -4.2995 44 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416531629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:24 Heat of formation + Delta-G solvation = -99.278660 kcal Electronic energy + Delta-G solvation = -26169.282494 eV Core-core repulsion = 22406.753923 eV Total energy + Delta-G solvation = -3762.528571 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.65119 -37.80126 -37.09836 -36.75389 -35.57787 -33.22433 -32.36478 -31.36143 -30.53620 -27.60393 -25.69749 -25.63628 -25.52289 -24.51581 -23.38556 -21.93842 -19.22517 -18.88251 -17.80127 -17.26595 -16.69333 -16.41602 -16.11340 -15.77047 -15.60348 -15.39527 -14.96866 -14.64375 -14.17154 -13.91772 -13.50902 -13.17730 -13.02048 -12.91328 -12.62211 -12.32320 -12.22837 -11.86775 -11.84582 -11.77900 -11.70701 -11.48563 -11.30667 -11.12414 -10.95670 -10.68609 -10.63937 -10.39888 -10.17785 -10.03146 -9.66177 -9.48221 -9.33553 -9.09551 -8.84096 -8.76509 -8.37847 -6.02014 -4.12802 0.57301 0.83573 1.08999 3.08074 3.25909 3.34807 3.37523 3.46156 3.76002 4.03232 4.37674 4.40361 4.55478 4.75684 4.81353 4.89764 4.96341 5.04785 5.08415 5.14304 5.24635 5.34479 5.36372 5.60502 5.75332 5.79272 5.97509 6.09792 6.18705 6.21233 6.44930 6.49539 6.67012 6.76452 6.79292 6.91579 7.00684 7.06907 7.35237 7.52336 7.59544 7.70101 8.03794 8.15396 8.39345 8.87741 9.53042 10.99147 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003293 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.576834 B = 8500.269418 C = 8986.287727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.103 3.897 4 C -0.118 4.118 5 C -0.047 4.047 6 C -0.143 4.143 7 C -0.010 4.010 8 C -0.673 4.673 9 S 2.691 3.309 10 O -0.959 6.959 11 O -0.971 6.971 12 N -1.105 6.105 13 C 0.127 3.873 14 C 0.064 3.936 15 C -0.133 4.133 16 C -0.132 4.132 17 C -0.508 4.508 18 H 0.058 0.942 19 C 0.066 3.934 20 N -0.884 5.884 21 Si 0.892 3.108 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.002 3.998 26 H 0.087 0.913 27 H 0.041 0.959 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.129 0.871 32 H 0.134 0.866 33 H 0.144 0.856 34 H 0.417 0.583 35 H 0.051 0.949 36 H 0.068 0.932 37 H 0.010 0.990 38 H 0.084 0.916 39 H 0.028 0.972 40 H 0.026 0.974 41 H 0.085 0.915 42 H 0.008 0.992 43 H 0.259 0.741 44 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 -9.565 8.337 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.305 6.305 3 C 0.027 3.973 4 C -0.119 4.119 5 C -0.065 4.065 6 C -0.161 4.161 7 C -0.029 4.029 8 C -0.758 4.758 9 S 2.779 3.221 10 O -0.949 6.949 11 O -0.961 6.961 12 N -0.869 5.869 13 C 0.002 3.998 14 C 0.062 3.938 15 C -0.191 4.191 16 C -0.190 4.190 17 C -0.546 4.546 18 H 0.076 0.924 19 C -0.135 4.135 20 N -0.523 5.523 21 Si 0.720 3.280 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.212 1.212 25 C -0.017 4.017 26 H 0.105 0.895 27 H 0.060 0.940 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.147 0.853 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.254 0.746 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.029 0.971 38 H 0.103 0.897 39 H 0.047 0.953 40 H 0.045 0.955 41 H 0.104 0.896 42 H 0.027 0.973 43 H 0.069 0.931 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.904 -10.415 7.934 19.098 hybrid contribution -0.116 1.386 0.945 1.682 sum -14.020 -9.028 8.879 18.892 Atomic orbital electron populations 1.22772 0.80846 1.02938 1.00097 1.87983 1.19734 1.27367 1.95431 1.21346 0.89396 0.85210 1.01379 1.19637 0.94315 1.04317 0.93632 1.21315 0.94485 0.93202 0.97542 1.21284 0.94271 1.02096 0.98493 1.21065 1.00595 0.90141 0.91104 1.31164 1.06191 1.17438 1.21034 1.01905 0.73641 0.73189 0.73315 1.93574 1.42501 1.73390 1.85413 1.93556 1.65002 1.79298 1.58235 1.55456 1.60330 1.33433 1.37664 1.21681 0.90643 0.94605 0.92855 1.18258 0.93369 0.89155 0.93023 1.21830 0.98041 1.00688 0.98518 1.21834 0.96220 1.01819 0.99082 1.21047 1.26580 1.06886 1.00127 0.92382 1.24887 0.96334 0.97312 0.94983 1.69820 1.43970 1.23144 1.15317 0.86542 0.80800 0.80009 0.80641 1.19798 1.21059 1.21154 1.20785 0.92027 0.90265 0.98605 0.89485 0.94024 0.93819 0.92114 0.91896 0.85338 0.84790 0.83868 0.74592 0.93090 0.91401 0.97071 0.89732 0.95300 0.95485 0.89598 0.97261 0.93054 0.84265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.21 10.69 -35.23 -0.38 -4.58 16 3 C 0.10 1.00 6.06 36.01 0.22 1.22 16 4 C -0.12 -1.40 5.51 -104.62 -0.58 -1.98 16 5 C -0.05 -0.51 9.70 -39.58 -0.38 -0.89 16 6 C -0.14 -1.60 10.05 -39.58 -0.40 -1.99 16 7 C -0.01 -0.13 9.52 -39.58 -0.38 -0.51 16 8 C -0.67 -9.72 5.95 -39.58 -0.24 -9.95 16 9 S 2.69 43.88 5.74 -107.50 -0.62 43.26 16 10 O -0.96 -17.98 16.75 -57.17 -0.96 -18.94 16 11 O -0.97 -17.31 17.28 -57.17 -0.99 -18.30 16 12 N -1.11 -18.65 5.33 -10.61 -0.06 -18.71 16 13 C 0.13 2.44 5.05 -4.04 -0.02 2.42 16 14 C 0.06 1.44 0.51 -155.66 -0.08 1.36 16 15 C -0.13 -3.05 8.08 37.16 0.30 -2.75 16 16 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 17 C -0.51 -12.84 8.01 -34.44 -0.28 -13.11 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 20 N -0.88 -23.33 9.35 55.43 0.52 -22.81 16 21 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 24 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 25 C 0.00 0.03 9.18 -39.58 -0.36 -0.33 16 26 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 30 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 31 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.79 7.62 -52.48 -0.40 1.39 16 34 H 0.42 6.73 6.47 -34.48 -0.22 6.51 16 35 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 37 H 0.01 0.22 7.20 -51.93 -0.37 -0.16 16 38 H 0.08 2.13 6.07 -51.93 -0.31 1.81 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.09 2.11 6.07 -51.93 -0.32 1.79 16 42 H 0.01 0.17 6.60 -51.93 -0.34 -0.18 16 43 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 44 H 0.14 1.74 7.61 -52.49 -0.40 1.34 16 LS Contribution 370.45 15.07 5.58 5.58 Total: -1.00 -31.19 370.45 -9.32 -40.51 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.54 Total: 4.90 kcal Atomic # 6 Polarization: -25.29 SS G_CDS: -0.87 Total: -26.16 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.46 Total: -41.52 kcal Atomic # 8 Polarization: -39.50 SS G_CDS: -2.32 Total: -41.82 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Atomic # 16 Polarization: 43.88 SS G_CDS: -0.62 Total: 43.26 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.19 -9.32 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416531629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.764 kcal (2) G-P(sol) polarization free energy of solvation -31.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds