Wall clock time and date at job start Tue Mar 31 2020 15:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00076 * 2 1 4 4 C 1.50701 * 109.47115 * 179.97438 * 3 2 1 5 5 C 1.38253 * 119.99890 * 270.01677 * 4 3 2 6 6 C 1.38220 * 120.00051 * 180.02562 * 5 4 3 7 7 C 1.38255 * 119.99697 * 359.95697 * 6 5 4 8 8 C 1.38217 * 120.00132 * 0.07194 * 7 6 5 9 9 S 1.76199 * 119.99635 * 179.97438 * 8 7 6 10 10 O 1.42098 * 106.40706 * 23.48889 * 9 8 7 11 11 O 1.42109 * 106.40127 * 156.41361 * 9 8 7 12 12 N 1.65600 * 107.21686 * 269.94654 * 9 8 7 13 13 C 1.46508 * 119.99578 * 65.00548 * 12 9 8 14 14 C 1.53002 * 109.46909 * 164.99957 * 13 12 9 15 15 C 1.53002 * 109.47178 * 299.99827 * 14 13 12 16 16 C 1.52998 * 109.47303 * 60.00022 * 14 13 12 17 17 C 1.50695 * 109.47055 * 180.02562 * 14 13 12 18 18 H 1.08001 * 120.00183 * 359.97438 * 17 14 13 19 19 C 1.37877 * 119.99903 * 179.97438 * 17 14 13 20 20 N 1.31516 * 120.00503 * 359.97438 * 19 17 14 21 21 Si 1.86808 * 119.99889 * 179.97438 * 19 17 14 22 22 H 1.48502 * 109.47035 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47045 * 120.00103 * 21 19 17 24 24 H 1.48500 * 109.46924 * 240.00197 * 21 19 17 25 25 C 1.38215 * 119.99815 * 89.99840 * 4 3 2 26 26 H 1.08997 * 109.47145 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47232 * 300.00065 * 1 2 3 28 28 H 1.09002 * 109.47070 * 60.00293 * 1 2 3 29 29 H 1.08990 * 109.47298 * 59.99415 * 3 2 1 30 30 H 1.09006 * 109.47065 * 299.99406 * 3 2 1 31 31 H 1.08002 * 120.00348 * 359.97438 * 5 4 3 32 32 H 1.07999 * 120.00153 * 179.97438 * 6 5 4 33 33 H 1.08005 * 119.99804 * 179.97438 * 7 6 5 34 34 H 0.96997 * 120.00670 * 245.00427 * 12 9 8 35 35 H 1.09000 * 109.46980 * 284.99631 * 13 12 9 36 36 H 1.08994 * 109.47042 * 44.99882 * 13 12 9 37 37 H 1.09000 * 109.47011 * 60.00045 * 15 14 13 38 38 H 1.09000 * 109.47239 * 180.02562 * 15 14 13 39 39 H 1.09002 * 109.47057 * 300.00091 * 15 14 13 40 40 H 1.09000 * 109.47387 * 59.99836 * 16 14 13 41 41 H 1.09001 * 109.47574 * 180.02562 * 16 14 13 42 42 H 1.09002 * 109.46807 * 299.99483 * 16 14 13 43 43 H 0.96996 * 120.00144 * 179.97438 * 20 19 17 44 44 H 1.07995 * 120.00164 * 359.72517 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2011 1.1317 1.1982 6 6 5.5790 1.0231 1.1989 7 6 6.2686 0.9683 0.0018 8 6 5.5802 1.0236 -1.1955 9 16 6.4592 0.9544 -2.7210 10 8 7.6953 0.3109 -2.4431 11 8 5.5379 0.4809 -3.6938 12 7 6.8279 2.5121 -3.1453 13 6 7.7405 3.3012 -2.3142 14 6 8.2049 4.5327 -3.0944 15 6 8.9296 4.0874 -4.3662 16 6 6.9916 5.3854 -3.4707 17 6 9.1441 5.3441 -2.2397 18 1 9.3854 5.0146 -1.2399 19 6 9.6955 6.5071 -2.7342 20 7 9.4021 6.9081 -3.9519 21 14 10.8592 7.5133 -1.6744 22 1 11.0241 6.8519 -0.3551 23 1 12.1794 7.6136 -2.3469 24 1 10.2986 8.8744 -1.4786 25 6 4.2019 1.1316 -1.1961 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8898 30 1 1.6887 1.8464 -0.8901 31 1 3.6624 1.1747 2.1334 32 1 6.1170 0.9808 2.1344 33 1 7.3453 0.8838 0.0023 34 1 6.4397 2.9020 -3.9441 35 1 7.2243 3.6185 -1.4081 36 1 8.6049 2.6937 -2.0461 37 1 8.2506 3.5002 -4.9845 38 1 9.2608 4.9647 -4.9218 39 1 9.7940 3.4799 -4.0981 40 1 6.4753 5.7027 -2.5647 41 1 7.3223 6.2626 -4.0269 42 1 6.3127 4.7983 -4.0892 43 1 9.7897 7.7265 -4.2995 44 1 3.6636 1.1696 -2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416531629.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:24:24 Heat of formation + Delta-G solvation = -119.939682 kcal Electronic energy + Delta-G solvation = -26170.178423 eV Core-core repulsion = 22406.753923 eV Total energy + Delta-G solvation = -3763.424500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.52283 -38.68722 -38.51104 -38.24986 -36.97168 -34.92620 -33.22733 -32.35613 -32.25420 -28.26631 -27.50309 -27.37738 -26.33664 -26.20235 -24.35836 -22.82982 -20.75719 -20.40705 -18.97267 -18.58168 -17.63176 -17.39641 -17.31822 -17.06834 -16.83678 -16.50464 -16.19649 -15.82904 -15.42276 -15.07819 -14.92939 -14.86529 -14.06434 -13.97963 -13.76474 -13.40474 -13.33438 -13.30004 -13.21185 -13.16856 -13.13644 -12.90862 -12.73691 -12.45973 -12.41559 -12.25391 -12.12984 -12.06176 -11.77085 -11.44336 -11.09673 -10.67773 -10.64020 -10.44715 -10.37290 -10.20754 -10.01067 -7.96543 -6.12609 -0.63123 -0.21650 0.17342 1.44877 1.49451 1.57859 2.00296 2.36794 2.50244 2.72544 3.06551 3.27461 3.32738 3.75576 3.80298 3.97582 4.16829 4.21332 4.25600 4.35075 4.45077 4.56397 4.56777 4.58980 4.74168 4.77652 4.81931 4.87538 4.88977 5.02334 5.10734 5.14309 5.22399 5.26517 5.27940 5.34296 5.54327 5.72893 5.73413 5.79271 6.10095 6.17223 6.20722 6.30273 6.48931 6.94590 7.55267 9.02538 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.015909 B = 0.003293 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.576834 B = 8500.269418 C = 8986.287727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.414 6.414 3 C 0.101 3.899 4 C -0.124 4.124 5 C -0.042 4.042 6 C -0.140 4.140 7 C -0.030 4.030 8 C -0.681 4.681 9 S 2.707 3.293 10 O -0.988 6.988 11 O -0.989 6.989 12 N -1.105 6.105 13 C 0.138 3.862 14 C 0.054 3.946 15 C -0.128 4.128 16 C -0.124 4.124 17 C -0.522 4.522 18 H 0.056 0.944 19 C 0.024 3.976 20 N -0.904 5.904 21 Si 0.945 3.055 22 H -0.268 1.268 23 H -0.288 1.288 24 H -0.284 1.284 25 C -0.015 4.015 26 H 0.094 0.906 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.163 0.837 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.420 0.580 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.030 0.970 38 H 0.059 0.941 39 H 0.019 0.981 40 H 0.028 0.972 41 H 0.058 0.942 42 H 0.033 0.967 43 H 0.257 0.743 44 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.869 -9.805 10.494 21.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.334 6.334 3 C 0.025 3.975 4 C -0.125 4.125 5 C -0.060 4.060 6 C -0.159 4.159 7 C -0.049 4.049 8 C -0.770 4.770 9 S 2.799 3.201 10 O -0.978 6.978 11 O -0.979 6.979 12 N -0.867 5.867 13 C 0.013 3.987 14 C 0.053 3.947 15 C -0.186 4.186 16 C -0.182 4.182 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.176 4.176 20 N -0.543 5.543 21 Si 0.772 3.228 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.211 1.211 25 C -0.035 4.035 26 H 0.113 0.887 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.180 0.820 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.257 0.743 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.049 0.951 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -15.420 -10.657 10.053 21.270 hybrid contribution 0.269 1.413 0.330 1.475 sum -15.151 -9.244 10.383 20.563 Atomic orbital electron populations 1.22959 0.79123 1.03884 1.01223 1.87931 1.21695 1.28052 1.95682 1.21444 0.87970 0.85188 1.02913 1.19985 0.95752 1.03387 0.93400 1.21766 0.94474 0.91232 0.98520 1.21664 0.94772 1.00638 0.98783 1.21271 1.00955 0.91011 0.91667 1.30688 1.06523 1.19963 1.19874 1.01128 0.72942 0.72423 0.73582 1.93531 1.44275 1.73996 1.86005 1.93524 1.65202 1.79471 1.59723 1.55314 1.60269 1.33281 1.37872 1.21397 0.91034 0.93322 0.92986 1.18296 0.93246 0.90392 0.92806 1.21739 0.98241 0.99672 0.98936 1.21692 0.96378 1.00960 0.99149 1.21393 1.27030 1.07271 1.00411 0.92567 1.25513 0.97722 0.98393 0.95948 1.69952 1.44689 1.23301 1.16335 0.85708 0.78903 0.78705 0.79468 1.19225 1.21410 1.21065 1.20955 0.91743 0.91084 0.99704 0.88745 0.92378 0.93185 0.89672 0.91315 0.81981 0.81796 0.83824 0.74252 0.91804 0.91997 0.95107 0.92173 0.96163 0.95320 0.92339 0.94803 0.93314 0.84165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -8.11 10.69 -148.98 -1.59 -9.70 16 3 C 0.10 1.69 6.06 71.24 0.43 2.12 16 4 C -0.12 -2.66 5.51 -19.87 -0.11 -2.77 16 5 C -0.04 -0.76 9.70 22.27 0.22 -0.54 16 6 C -0.14 -2.73 10.05 22.27 0.22 -2.50 16 7 C -0.03 -0.75 9.52 22.27 0.21 -0.54 16 8 C -0.68 -19.17 5.95 22.27 0.13 -19.03 16 9 S 2.71 88.12 5.74 -56.49 -0.32 87.80 16 10 O -0.99 -37.37 16.75 -128.00 -2.14 -39.51 16 11 O -0.99 -35.32 17.28 -128.00 -2.21 -37.53 16 12 N -1.10 -36.74 5.33 -187.48 -1.00 -37.74 16 13 C 0.14 5.23 5.05 86.38 0.44 5.67 16 14 C 0.05 2.45 0.51 -52.93 -0.03 2.42 16 15 C -0.13 -5.91 8.08 71.98 0.58 -5.33 16 16 C -0.12 -5.39 8.08 71.98 0.58 -4.80 16 17 C -0.52 -26.38 8.01 25.60 0.21 -26.17 16 18 H 0.06 2.79 7.74 -2.91 -0.02 2.77 16 19 C 0.02 1.21 5.15 84.65 0.44 1.65 16 20 N -0.90 -48.29 9.35 21.45 0.20 -48.08 16 21 Si 0.94 41.55 29.54 68.60 2.03 43.58 16 22 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 23 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 24 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 25 C -0.02 -0.40 9.18 22.27 0.20 -0.19 16 26 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 27 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 30 H 0.07 1.04 8.09 -2.38 -0.02 1.02 16 31 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.16 2.13 8.06 -2.91 -0.02 2.11 16 33 H 0.14 3.51 7.62 -2.91 -0.02 3.48 16 34 H 0.42 13.27 6.47 -96.75 -0.63 12.65 16 35 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.06 2.41 7.75 -2.39 -0.02 2.39 16 37 H 0.03 1.25 7.20 -2.39 -0.02 1.23 16 38 H 0.06 3.08 6.07 -2.39 -0.01 3.06 16 39 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 2.88 6.07 -2.39 -0.01 2.87 16 42 H 0.03 1.26 6.60 -2.39 -0.02 1.24 16 43 H 0.26 13.29 8.31 -92.71 -0.77 12.52 16 44 H 0.14 3.44 7.61 -2.91 -0.02 3.42 16 Total: -1.00 -66.51 370.45 0.10 -66.41 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 0.37 Total: 23.27 kcal Atomic # 6 Polarization: -53.26 SS G_CDS: 4.77 Total: -48.49 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -0.80 Total: -85.83 kcal Atomic # 8 Polarization: -80.79 SS G_CDS: -5.95 Total: -86.74 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Atomic # 16 Polarization: 88.12 SS G_CDS: -0.32 Total: 87.80 kcal Total: -66.51 0.10 -66.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416531629.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.535 kcal (2) G-P(sol) polarization free energy of solvation -66.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds