Wall clock time and date at job start Tue Mar 31 2020 15:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 H 1.08994 * 109.47152 * 55.37621 * 3 2 1 5 5 C 1.52995 * 109.46981 * 175.37837 * 3 2 1 6 6 S 1.81405 * 109.47077 * 184.95261 * 5 3 2 7 7 O 1.42094 * 110.54200 * 294.75448 * 6 5 3 8 8 O 1.42097 * 110.54180 * 71.50510 * 6 5 3 9 9 N 1.65600 * 104.45097 * 183.12725 * 6 5 3 10 10 C 1.46497 * 120.00084 * 270.00225 * 9 6 5 11 11 C 1.50701 * 109.46967 * 95.00358 * 10 9 6 12 12 H 1.07992 * 120.00344 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99880 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00283 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99867 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47411 * 90.00120 * 15 13 11 17 17 H 1.48499 * 109.46765 * 210.00201 * 15 13 11 18 18 H 1.48504 * 109.47082 * 329.99695 * 15 13 11 19 19 C 1.39678 * 119.99605 * 89.99578 * 9 6 5 20 20 C 1.38913 * 120.07847 * 334.72917 * 19 9 6 21 21 C 1.38105 * 119.92234 * 179.76429 * 20 19 9 22 22 C 1.38285 * 120.07442 * 0.50788 * 21 20 19 23 23 C 1.38278 * 120.15141 * 359.74387 * 22 21 20 24 24 C 1.38103 * 120.07848 * 0.02562 * 23 22 21 25 25 O 1.42902 * 109.46927 * 295.37760 * 3 2 1 26 26 C 1.42901 * 113.99901 * 106.30569 * 25 3 2 27 27 H 1.09006 * 109.47087 * 184.95658 * 1 2 3 28 28 H 1.09002 * 109.47504 * 304.95331 * 1 2 3 29 29 H 1.09004 * 109.47491 * 64.95886 * 1 2 3 30 30 H 1.09000 * 109.47354 * 239.99651 * 2 1 3 31 31 H 1.08998 * 109.46907 * 119.99784 * 2 1 3 32 32 H 1.08998 * 109.47134 * 304.95046 * 5 3 2 33 33 H 1.08999 * 109.46926 * 64.95568 * 5 3 2 34 34 H 1.09004 * 109.46851 * 214.99641 * 10 9 6 35 35 H 1.08991 * 109.47064 * 335.00020 * 10 9 6 36 36 H 0.97002 * 120.00280 * 180.02562 * 14 13 11 37 37 H 1.07992 * 120.03352 * 359.97438 * 20 19 9 38 38 H 1.08001 * 119.95748 * 180.25374 * 21 20 19 39 39 H 1.08004 * 119.92271 * 179.71848 * 22 21 20 40 40 H 1.08004 * 119.96329 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.04297 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46729 * 65.39601 * 26 25 3 43 43 H 1.08997 * 109.47402 * 185.39823 * 26 25 3 44 44 H 1.09002 * 109.47253 * 305.39814 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5655 1.4440 0.1162 6 16 4.1590 3.1519 0.2636 7 8 3.8889 3.8782 -0.9275 8 8 3.8289 3.6863 1.5382 9 7 5.8090 3.0149 0.2931 10 6 6.5081 2.8559 1.5707 11 6 6.7415 1.3910 1.8366 12 1 6.4026 0.6524 1.1254 13 6 7.3868 0.9937 2.9884 14 7 7.5901 -0.2846 3.2208 15 14 7.9723 2.2714 4.2190 16 1 6.8970 2.5349 5.2087 17 1 9.1786 1.7652 4.9218 18 1 8.3071 3.5296 3.5048 19 6 6.5342 3.0509 -0.9001 20 6 5.9292 2.6790 -2.0940 21 6 6.6478 2.7204 -3.2727 22 6 7.9711 3.1215 -3.2637 23 6 8.5780 3.4874 -2.0763 24 6 7.8639 3.4529 -0.8947 25 8 1.6543 2.0840 -1.2173 26 6 0.5947 3.0307 -1.0650 27 1 -0.3633 -1.0239 0.0888 28 1 -0.3634 0.5888 0.8423 29 1 -0.3634 0.4350 -0.9311 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8632 0.8785 0.9992 33 1 3.9980 0.9845 -0.7725 34 1 7.4660 3.3744 1.5277 35 1 5.9017 3.2785 2.3717 36 1 8.0437 -0.5641 4.0314 37 1 4.8971 2.3610 -2.1008 38 1 6.1767 2.4353 -4.2018 39 1 8.5321 3.1487 -4.1862 40 1 9.6118 3.7998 -2.0728 41 1 8.3386 3.7384 0.0324 42 1 0.9366 3.8627 -0.4494 43 1 0.2960 3.4025 -2.0451 44 1 -0.2567 2.5488 -0.5843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421149770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:54 Heat of formation + Delta-G solvation = -85.510720 kcal Electronic energy + Delta-G solvation = -27367.165709 eV Core-core repulsion = 23605.234161 eV Total energy + Delta-G solvation = -3761.931548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.10828 -38.71298 -36.79444 -35.69051 -35.45317 -33.73622 -32.65687 -30.73337 -30.41299 -29.52196 -27.28230 -26.66683 -24.13562 -23.01975 -22.27282 -21.30867 -20.93053 -18.72741 -17.57371 -17.23831 -17.08511 -16.51774 -16.21238 -15.65624 -15.42653 -14.91584 -14.69429 -14.20219 -14.09512 -13.93303 -13.76131 -13.34883 -13.08444 -12.81563 -12.74306 -12.65784 -12.49699 -12.12730 -12.06538 -11.80336 -11.68872 -11.48991 -11.46240 -11.40082 -11.28930 -10.97828 -10.82343 -10.77706 -10.60307 -10.45018 -10.27739 -9.84865 -9.61134 -9.24551 -8.76460 -8.49825 -7.44164 -6.27465 -4.30562 0.59766 1.83665 1.89489 2.94232 3.19369 3.26318 3.28740 3.57851 4.03935 4.24714 4.30893 4.53628 4.59722 4.71399 4.88624 5.02332 5.15912 5.18158 5.22284 5.30404 5.32724 5.35745 5.43578 5.46631 5.62790 5.63156 5.67149 5.79537 5.89116 5.97416 5.99198 6.03237 6.20123 6.21710 6.45252 6.58783 6.69139 6.83768 6.96478 7.03259 7.09289 7.11549 7.35040 7.59553 8.25324 8.72796 9.31046 10.84435 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.006088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.270363 B = 4598.459420 C = 6323.741958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.131 4.131 3 C 0.100 3.900 4 H 0.074 0.926 5 C -0.635 4.635 6 S 2.604 3.396 7 O -0.944 6.944 8 O -0.954 6.954 9 N -0.922 5.922 10 C 0.201 3.799 11 C -0.551 4.551 12 H 0.082 0.918 13 C 0.081 3.919 14 N -0.887 5.887 15 Si 0.867 3.133 16 H -0.269 1.269 17 H -0.281 1.281 18 H -0.262 1.262 19 C 0.203 3.797 20 C -0.167 4.167 21 C -0.088 4.088 22 C -0.160 4.160 23 C -0.094 4.094 24 C -0.142 4.142 25 O -0.376 6.376 26 C 0.022 3.978 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.141 0.859 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.129 0.871 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.819 3.622 -8.881 13.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.170 4.170 3 C 0.040 3.960 4 H 0.092 0.908 5 C -0.764 4.764 6 S 2.699 3.301 7 O -0.935 6.935 8 O -0.944 6.944 9 N -0.745 5.745 10 C 0.079 3.921 11 C -0.589 4.589 12 H 0.100 0.900 13 C -0.123 4.123 14 N -0.524 5.524 15 Si 0.693 3.307 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.186 1.186 19 C 0.105 3.895 20 C -0.188 4.188 21 C -0.106 4.106 22 C -0.180 4.180 23 C -0.113 4.113 24 C -0.164 4.164 25 O -0.295 6.295 26 C -0.074 4.074 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.176 0.824 33 H 0.159 0.841 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -9.181 4.262 -8.733 13.368 hybrid contribution 0.504 -0.278 1.060 1.206 sum -8.677 3.984 -7.673 12.249 Atomic orbital electron populations 1.21836 0.95534 1.02018 1.01877 1.21890 0.96187 0.95083 1.03808 1.21802 0.90593 0.95742 0.87830 0.90825 1.30960 1.04108 1.27804 1.13527 1.05189 0.73139 0.77580 0.74194 1.93602 1.83379 1.68605 1.47864 1.93570 1.82513 1.76380 1.41974 1.55431 1.24449 1.82778 1.11853 1.19932 0.94219 0.99062 0.78929 1.21334 1.40271 0.90208 1.07099 0.89989 1.24805 0.94803 0.95239 0.97470 1.69872 1.41386 1.14548 1.26631 0.86976 0.79220 0.82311 0.82194 1.19468 1.20682 1.18649 1.17484 0.92564 0.94774 0.84629 1.20996 1.00589 1.04987 0.92276 1.20765 0.94144 0.98740 0.96992 1.20932 0.95307 1.03928 0.97801 1.20911 0.99243 0.98975 0.92145 1.20939 0.93454 1.03018 0.98981 1.88011 1.54175 1.56785 1.30521 1.22987 0.89585 0.91582 1.03256 0.92261 0.92818 0.92200 0.90443 0.90118 0.82358 0.84076 0.93478 0.92818 0.92215 0.85884 0.86151 0.86611 0.86232 0.85297 0.93943 0.88956 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.87 37.16 0.33 -1.21 16 2 C -0.13 -1.57 5.64 -26.73 -0.15 -1.73 16 3 C 0.10 1.42 2.25 -26.73 -0.06 1.36 16 4 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 5 C -0.64 -10.36 5.72 37.15 0.21 -10.15 16 6 S 2.60 50.66 4.68 -107.50 -0.50 50.16 16 7 O -0.94 -18.82 14.57 -61.16 -0.89 -19.71 16 8 O -0.95 -20.74 16.53 -57.54 -0.95 -21.69 16 9 N -0.92 -19.37 2.91 -59.81 -0.17 -19.54 16 10 C 0.20 4.66 4.23 -5.19 -0.02 4.64 16 11 C -0.55 -14.38 9.92 -34.44 -0.34 -14.72 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.84 16 13 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 14 N -0.89 -25.38 13.96 55.43 0.77 -24.61 16 15 Si 0.87 20.20 27.47 -169.99 -4.67 15.53 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.26 -5.80 6.54 56.52 0.37 -5.43 16 19 C 0.20 4.04 6.04 -83.78 -0.51 3.53 16 20 C -0.17 -3.01 8.42 -39.38 -0.33 -3.34 16 21 C -0.09 -1.36 10.04 -39.61 -0.40 -1.76 16 22 C -0.16 -2.33 10.04 -39.55 -0.40 -2.73 16 23 C -0.09 -1.47 10.04 -39.62 -0.40 -1.86 16 24 C -0.14 -2.63 9.36 -39.38 -0.37 -3.00 16 25 O -0.38 -5.42 9.24 -39.43 -0.36 -5.79 16 26 C 0.02 0.26 10.38 101.05 1.05 1.31 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.57 7.13 -51.93 -0.37 0.20 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.16 2.63 8.14 -51.92 -0.42 2.21 16 33 H 0.14 2.15 7.20 -51.92 -0.37 1.78 16 34 H 0.05 1.06 5.09 -51.93 -0.26 0.80 16 35 H 0.05 1.27 6.24 -51.93 -0.32 0.94 16 36 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.12 2.12 5.16 -52.49 -0.27 1.85 16 38 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 39 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.12 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.13 2.37 6.20 -52.49 -0.33 2.05 16 42 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.44 6.69 -51.93 -0.35 0.09 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -31.76 365.41 -9.24 -41.00 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -6.49 Total: 6.71 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -1.48 Total: -27.57 kcal Atomic # 7 Polarization: -44.75 SS G_CDS: 0.60 Total: -44.15 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -2.21 Total: -47.19 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -4.67 Total: 15.53 kcal Atomic # 16 Polarization: 50.66 SS G_CDS: -0.50 Total: 50.16 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.76 -9.24 -41.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421149770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.510 kcal (2) G-P(sol) polarization free energy of solvation -31.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds