Wall clock time and date at job start Tue Mar 31 2020 15:45:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47073 * 2 1 4 4 H 1.08994 * 109.47152 * 55.37621 * 3 2 1 5 5 C 1.52995 * 109.46981 * 175.37837 * 3 2 1 6 6 S 1.81405 * 109.47077 * 184.95261 * 5 3 2 7 7 O 1.42094 * 110.54200 * 294.75448 * 6 5 3 8 8 O 1.42097 * 110.54180 * 71.50510 * 6 5 3 9 9 N 1.65600 * 104.45097 * 183.12725 * 6 5 3 10 10 C 1.46497 * 120.00084 * 270.00225 * 9 6 5 11 11 C 1.50701 * 109.46967 * 95.00358 * 10 9 6 12 12 H 1.07992 * 120.00344 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99880 * 180.02562 * 11 10 9 14 14 N 1.31509 * 120.00283 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 119.99867 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.47411 * 90.00120 * 15 13 11 17 17 H 1.48499 * 109.46765 * 210.00201 * 15 13 11 18 18 H 1.48504 * 109.47082 * 329.99695 * 15 13 11 19 19 C 1.39678 * 119.99605 * 89.99578 * 9 6 5 20 20 C 1.38913 * 120.07847 * 334.72917 * 19 9 6 21 21 C 1.38105 * 119.92234 * 179.76429 * 20 19 9 22 22 C 1.38285 * 120.07442 * 0.50788 * 21 20 19 23 23 C 1.38278 * 120.15141 * 359.74387 * 22 21 20 24 24 C 1.38103 * 120.07848 * 0.02562 * 23 22 21 25 25 O 1.42902 * 109.46927 * 295.37760 * 3 2 1 26 26 C 1.42901 * 113.99901 * 106.30569 * 25 3 2 27 27 H 1.09006 * 109.47087 * 184.95658 * 1 2 3 28 28 H 1.09002 * 109.47504 * 304.95331 * 1 2 3 29 29 H 1.09004 * 109.47491 * 64.95886 * 1 2 3 30 30 H 1.09000 * 109.47354 * 239.99651 * 2 1 3 31 31 H 1.08998 * 109.46907 * 119.99784 * 2 1 3 32 32 H 1.08998 * 109.47134 * 304.95046 * 5 3 2 33 33 H 1.08999 * 109.46926 * 64.95568 * 5 3 2 34 34 H 1.09004 * 109.46851 * 214.99641 * 10 9 6 35 35 H 1.08991 * 109.47064 * 335.00020 * 10 9 6 36 36 H 0.97002 * 120.00280 * 180.02562 * 14 13 11 37 37 H 1.07992 * 120.03352 * 359.97438 * 20 19 9 38 38 H 1.08001 * 119.95748 * 180.25374 * 21 20 19 39 39 H 1.08004 * 119.92271 * 179.71848 * 22 21 20 40 40 H 1.08004 * 119.96329 * 179.97438 * 23 22 21 41 41 H 1.07998 * 120.04297 * 179.97438 * 24 23 22 42 42 H 1.09003 * 109.46729 * 65.39601 * 26 25 3 43 43 H 1.08997 * 109.47402 * 185.39823 * 26 25 3 44 44 H 1.09002 * 109.47253 * 305.39814 * 26 25 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6106 1.9797 0.8456 5 6 3.5655 1.4440 0.1162 6 16 4.1590 3.1519 0.2636 7 8 3.8889 3.8782 -0.9275 8 8 3.8289 3.6863 1.5382 9 7 5.8090 3.0149 0.2931 10 6 6.5081 2.8559 1.5707 11 6 6.7415 1.3910 1.8366 12 1 6.4026 0.6524 1.1254 13 6 7.3868 0.9937 2.9884 14 7 7.5901 -0.2846 3.2208 15 14 7.9723 2.2714 4.2190 16 1 6.8970 2.5349 5.2087 17 1 9.1786 1.7652 4.9218 18 1 8.3071 3.5296 3.5048 19 6 6.5342 3.0509 -0.9001 20 6 5.9292 2.6790 -2.0940 21 6 6.6478 2.7204 -3.2727 22 6 7.9711 3.1215 -3.2637 23 6 8.5780 3.4874 -2.0763 24 6 7.8639 3.4529 -0.8947 25 8 1.6543 2.0840 -1.2173 26 6 0.5947 3.0307 -1.0650 27 1 -0.3633 -1.0239 0.0888 28 1 -0.3634 0.5888 0.8423 29 1 -0.3634 0.4350 -0.9311 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.8632 0.8785 0.9992 33 1 3.9980 0.9845 -0.7725 34 1 7.4660 3.3744 1.5277 35 1 5.9017 3.2785 2.3717 36 1 8.0437 -0.5641 4.0314 37 1 4.8971 2.3610 -2.1008 38 1 6.1767 2.4353 -4.2018 39 1 8.5321 3.1487 -4.1862 40 1 9.6118 3.7998 -2.0728 41 1 8.3386 3.7384 0.0324 42 1 0.9366 3.8627 -0.4494 43 1 0.2960 3.4025 -2.0451 44 1 -0.2567 2.5488 -0.5843 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421149770.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:53 Heat of formation + Delta-G solvation = -105.872818 kcal Electronic energy + Delta-G solvation = -27368.048676 eV Core-core repulsion = 23605.234161 eV Total energy + Delta-G solvation = -3762.814515 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.46831 -39.78389 -38.39672 -37.23359 -37.02517 -34.75538 -34.64871 -31.98667 -31.58792 -31.07126 -28.97488 -27.65407 -25.24723 -24.66269 -23.60348 -22.57193 -22.22123 -20.22601 -19.16285 -19.04218 -18.37619 -17.88866 -17.67993 -16.94303 -16.68483 -16.44500 -15.98082 -15.80333 -15.46220 -15.13669 -14.87481 -14.64549 -14.39530 -14.33805 -14.19326 -14.02121 -13.79310 -13.48695 -13.42421 -13.34713 -13.15305 -13.05172 -13.01163 -12.54219 -12.38602 -12.29766 -12.25296 -12.20519 -11.89265 -11.79905 -11.72084 -11.68763 -10.99771 -10.83600 -10.60909 -9.79178 -8.88311 -8.35649 -6.42451 -0.90397 0.54175 0.58517 1.32202 1.35990 1.42024 1.45895 2.29258 2.48579 2.61119 2.96803 2.99455 3.04011 3.37337 3.61522 3.70728 3.86553 4.01908 4.09687 4.18993 4.33106 4.35817 4.39599 4.42699 4.45854 4.58849 4.65604 4.70180 4.77321 4.77961 4.80390 4.86644 4.99077 5.07878 5.12740 5.19815 5.33147 5.35329 5.51443 5.67422 5.69693 5.75080 6.00478 6.18083 6.26027 6.60989 7.22078 8.79083 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.009780 B = 0.006088 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2862.270363 B = 4598.459420 C = 6323.741958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.131 4.131 3 C 0.095 3.905 4 H 0.080 0.920 5 C -0.619 4.619 6 S 2.601 3.399 7 O -0.953 6.953 8 O -0.984 6.984 9 N -0.931 5.931 10 C 0.207 3.793 11 C -0.546 4.546 12 H 0.054 0.946 13 C 0.030 3.970 14 N -0.930 5.930 15 Si 0.919 3.081 16 H -0.266 1.266 17 H -0.275 1.275 18 H -0.245 1.245 19 C 0.166 3.834 20 C -0.185 4.185 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.093 4.093 24 C -0.168 4.168 25 O -0.391 6.391 26 C 0.010 3.990 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.152 0.848 33 H 0.150 0.850 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.270 0.730 37 H 0.122 0.878 38 H 0.153 0.847 39 H 0.157 0.843 40 H 0.150 0.850 41 H 0.120 0.880 42 H 0.031 0.969 43 H 0.110 0.890 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.924 4.116 -10.450 14.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.169 4.169 3 C 0.035 3.965 4 H 0.098 0.902 5 C -0.751 4.751 6 S 2.700 3.300 7 O -0.943 6.943 8 O -0.975 6.975 9 N -0.754 5.754 10 C 0.084 3.916 11 C -0.584 4.584 12 H 0.073 0.927 13 C -0.170 4.170 14 N -0.569 5.569 15 Si 0.742 3.258 16 H -0.191 1.191 17 H -0.200 1.200 18 H -0.168 1.168 19 C 0.070 3.930 20 C -0.207 4.207 21 C -0.107 4.107 22 C -0.169 4.169 23 C -0.111 4.111 24 C -0.190 4.190 25 O -0.310 6.310 26 C -0.086 4.086 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.168 0.832 41 H 0.138 0.862 42 H 0.050 0.950 43 H 0.128 0.872 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -9.271 4.806 -10.329 14.688 hybrid contribution 0.509 -0.472 1.376 1.542 sum -8.762 4.334 -8.953 13.255 Atomic orbital electron populations 1.21836 0.93560 1.03178 1.02465 1.21908 0.97928 0.93288 1.03826 1.21955 0.88732 0.97458 0.88309 0.90179 1.30816 1.06223 1.24440 1.13632 1.05141 0.72690 0.78727 0.73433 1.93573 1.83296 1.69806 1.47633 1.93520 1.82866 1.77926 1.43216 1.55324 1.24853 1.83663 1.11560 1.19672 0.94731 0.96993 0.80206 1.21476 1.39350 0.91300 1.06314 0.92741 1.25568 0.95099 0.96987 0.99368 1.69987 1.42872 1.16458 1.27569 0.86123 0.78970 0.80637 0.80043 1.19067 1.19992 1.16817 1.17847 0.93477 0.96953 0.84712 1.21199 1.01013 1.05688 0.92764 1.21231 0.94665 0.97614 0.97212 1.21426 0.95038 1.01529 0.98915 1.21315 1.00508 0.97877 0.91436 1.21121 0.93484 1.04322 1.00088 1.87983 1.55267 1.57319 1.30429 1.23261 0.89675 0.91094 1.04571 0.90879 0.92108 0.91716 0.90448 0.90150 0.83018 0.83224 0.92800 0.93333 0.92028 0.86002 0.82951 0.82569 0.83193 0.86175 0.95014 0.87172 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 8.87 71.98 0.64 -2.07 16 2 C -0.13 -3.01 5.64 30.59 0.17 -2.84 16 3 C 0.10 2.66 2.25 30.59 0.07 2.73 16 4 H 0.08 2.11 7.65 -2.39 -0.02 2.09 16 5 C -0.62 -20.66 5.72 71.98 0.41 -20.25 16 6 S 2.60 103.91 4.68 -56.49 -0.26 103.64 16 7 O -0.95 -38.59 14.57 -124.19 -1.81 -40.40 16 8 O -0.98 -44.14 16.53 -127.65 -2.11 -46.25 16 9 N -0.93 -40.20 2.91 -343.13 -1.00 -41.20 16 10 C 0.21 9.85 4.23 85.63 0.36 10.21 16 11 C -0.55 -29.36 9.92 25.60 0.25 -29.10 16 12 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 13 C 0.03 1.66 5.47 84.66 0.46 2.12 16 14 N -0.93 -54.45 13.96 21.45 0.30 -54.15 16 15 Si 0.92 41.63 27.47 68.60 1.88 43.52 16 16 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 17 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.24 -10.30 6.54 99.48 0.65 -9.65 16 19 C 0.17 6.69 6.04 38.22 0.23 6.92 16 20 C -0.19 -6.60 8.42 22.40 0.19 -6.42 16 21 C -0.09 -2.53 10.04 22.25 0.22 -2.31 16 22 C -0.15 -3.86 10.04 22.29 0.22 -3.64 16 23 C -0.09 -2.69 10.04 22.25 0.22 -2.47 16 24 C -0.17 -6.22 9.36 22.40 0.21 -6.01 16 25 O -0.39 -10.94 9.24 -144.96 -1.34 -12.28 16 26 C 0.01 0.21 10.38 113.37 1.18 1.39 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.09 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.09 7.13 -2.38 -0.02 1.07 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 32 H 0.15 5.27 8.14 -2.39 -0.02 5.25 16 33 H 0.15 4.69 7.20 -2.39 -0.02 4.67 16 34 H 0.05 2.46 5.09 -2.38 -0.01 2.45 16 35 H 0.05 2.35 6.24 -2.39 -0.01 2.33 16 36 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 37 H 0.12 4.23 5.16 -2.91 -0.02 4.22 16 38 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 39 H 0.16 2.77 8.06 -2.91 -0.02 2.74 16 40 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 41 H 0.12 4.49 6.20 -2.91 -0.02 4.48 16 42 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.07 1.21 6.69 -2.39 -0.02 1.19 16 Total: -1.00 -69.87 365.41 1.44 -68.42 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.94 Total: 30.41 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 4.85 Total: -51.72 kcal Atomic # 7 Polarization: -94.65 SS G_CDS: -0.70 Total: -95.35 kcal Atomic # 8 Polarization: -93.67 SS G_CDS: -5.26 Total: -98.92 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 1.88 Total: 43.52 kcal Atomic # 16 Polarization: 103.91 SS G_CDS: -0.26 Total: 103.64 kcal Total: -69.87 1.44 -68.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421149770.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.450 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds