Wall clock time and date at job start Tue Mar 31 2020 14:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50581 * 2 1 4 4 C 1.53093 * 109.50905 * 120.08867 * 2 1 3 5 5 N 1.47009 * 109.26071 * 176.78472 * 4 2 1 6 6 C 1.46894 * 111.00295 * 177.60644 * 5 4 2 7 7 C 1.52999 * 109.47406 * 189.68063 * 6 5 4 8 8 C 1.53006 * 109.47326 * 180.02562 * 7 6 5 9 9 S 1.81004 * 109.47033 * 179.97438 * 8 7 6 10 10 C 1.76203 * 99.99806 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99768 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99807 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00135 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99668 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47419 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47213 * 120.00275 * 14 12 10 17 17 H 1.48499 * 109.46940 * 240.00257 * 14 12 10 18 18 C 1.47016 * 110.75376 * 301.38357 * 5 4 2 19 19 C 1.53103 * 109.29298 * 58.59374 * 18 5 4 20 20 H 1.08998 * 109.50917 * 63.10882 * 19 18 5 21 21 C 1.52994 * 109.50526 * 183.24310 * 19 18 5 22 22 F 1.39903 * 109.47736 * 59.99770 * 21 19 18 23 23 F 1.39897 * 109.47182 * 179.97438 * 21 19 18 24 24 F 1.39899 * 109.47153 * 299.99756 * 21 19 18 25 25 O 1.43015 * 109.50635 * 239.87423 * 2 1 3 26 26 H 1.08996 * 109.46923 * 299.91572 * 1 2 3 27 27 H 1.09006 * 109.46971 * 59.91313 * 1 2 3 28 28 H 1.08998 * 109.47134 * 179.91203 * 1 2 3 29 29 H 1.08999 * 109.47119 * 180.08827 * 3 2 1 30 30 H 1.09004 * 109.47040 * 300.08745 * 3 2 1 31 31 H 1.09000 * 109.47302 * 60.09036 * 3 2 1 32 32 H 1.09001 * 109.50838 * 56.84905 * 4 2 1 33 33 H 1.09005 * 109.53925 * 296.73782 * 4 2 1 34 34 H 1.08998 * 109.47139 * 309.68167 * 6 5 4 35 35 H 1.08998 * 109.47206 * 69.68306 * 6 5 4 36 36 H 1.09002 * 109.47532 * 300.00117 * 7 6 5 37 37 H 1.09000 * 109.47250 * 59.99929 * 7 6 5 38 38 H 1.09002 * 109.46738 * 299.99637 * 8 7 6 39 39 H 1.09000 * 109.47135 * 59.99710 * 8 7 6 40 40 H 0.97001 * 119.99750 * 179.97438 * 13 12 10 41 41 H 1.09002 * 109.50934 * 178.55099 * 18 5 4 42 42 H 1.09003 * 109.50733 * 298.63693 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0413 -0.7235 1.2486 5 7 3.5093 -0.7880 1.2047 6 6 4.0447 -1.4259 2.4147 7 6 5.5653 -1.2606 2.4482 8 6 6.1231 -1.9257 3.7083 9 16 7.9221 -1.7308 3.7475 10 6 8.2872 -2.5632 5.2569 11 1 7.4894 -2.9988 5.8400 12 6 9.6004 -2.6600 5.6960 13 7 10.5729 -2.1295 4.9851 14 14 9.9875 -3.5431 7.2959 15 1 8.7282 -4.0471 7.9004 16 1 10.8969 -4.6851 7.0235 17 1 10.6451 -2.5998 8.2354 18 6 3.9640 -1.4884 -0.0053 19 6 3.4335 -0.7581 -1.2420 20 1 3.8534 0.2470 -1.2792 21 6 3.8357 -1.5279 -2.5015 22 9 3.2940 -2.8169 -2.4534 23 9 3.3501 -0.8604 -3.6310 24 9 5.2305 -1.6106 -2.5719 25 8 2.0076 -0.6766 -1.1660 26 1 -0.3633 0.5125 0.8907 27 1 -0.3633 0.5152 -0.8893 28 1 -0.3633 -1.0276 -0.0016 29 1 3.1309 1.4415 -0.0016 30 1 1.6766 1.9567 -0.8892 31 1 1.6792 1.9558 0.8908 32 1 1.6332 -1.7338 1.2766 33 1 1.7274 -0.1793 2.1394 34 1 3.6087 -0.9562 3.2964 35 1 3.7947 -2.4868 2.4071 36 1 6.0015 -1.7304 1.5666 37 1 5.8155 -0.1998 2.4558 38 1 5.6871 -1.4562 4.5901 39 1 5.8729 -2.9866 3.7002 40 1 11.4905 -2.1968 5.2922 41 1 5.0537 -1.5020 -0.0302 42 1 3.5873 -2.5112 0.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428948443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:06 Heat of formation + Delta-G solvation = -207.532815 kcal Electronic energy + Delta-G solvation = -26662.569156 eV Core-core repulsion = 22353.489592 eV Total energy + Delta-G solvation = -4309.079564 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -50.31075 -47.83396 -47.77619 -40.59133 -36.80637 -34.44553 -32.85691 -32.43028 -30.33654 -27.71407 -26.91632 -26.48736 -25.52679 -23.23344 -22.71116 -20.80593 -20.02445 -18.64807 -18.54763 -18.13263 -17.49997 -16.66544 -16.15724 -15.73616 -15.33580 -14.86993 -14.80879 -14.66917 -14.49461 -14.40457 -14.27810 -14.20231 -13.93979 -13.91808 -13.77937 -13.32504 -12.99164 -12.72320 -12.54411 -12.30359 -12.15227 -12.08362 -11.88620 -11.69443 -11.64039 -11.29090 -11.09482 -10.89745 -10.78877 -10.65573 -10.35768 -10.10955 -9.53590 -9.08183 -8.64369 -8.32114 -6.54678 -6.24457 -3.94816 2.17336 2.93821 3.19191 3.19773 3.27811 3.30867 3.54583 3.69146 3.84319 4.16210 4.20750 4.35634 4.38047 4.55716 4.64706 4.68385 4.88441 5.11418 5.13892 5.15108 5.26843 5.29617 5.31851 5.38774 5.47284 5.48465 5.53098 5.60598 5.62431 5.77291 5.81450 5.96406 5.99031 6.25501 6.48101 6.54908 6.62930 6.70639 6.80646 7.59273 8.35213 9.22053 10.83756 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.002663 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.712086 B =10511.919912 C =11485.116875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.118 3.882 3 C -0.172 4.172 4 C 0.026 3.974 5 N -0.528 5.528 6 C 0.061 3.939 7 C -0.095 4.095 8 C -0.113 4.113 9 S -0.131 6.131 10 C -0.516 4.516 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.017 3.983 19 C 0.050 3.950 20 H 0.114 0.886 21 C 0.466 3.534 22 F -0.176 7.176 23 F -0.176 7.176 24 F -0.170 7.170 25 O -0.361 6.361 26 H 0.077 0.923 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.038 0.962 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.108 0.892 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.269 4.949 -12.871 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.079 3.921 3 C -0.229 4.229 4 C -0.102 4.102 5 N -0.252 5.252 6 C -0.068 4.068 7 C -0.134 4.134 8 C -0.262 4.262 9 S 0.097 5.903 10 C -0.665 4.665 11 H 0.091 0.909 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.112 4.112 19 C -0.010 4.010 20 H 0.132 0.868 21 C 0.412 3.588 22 F -0.157 7.157 23 F -0.157 7.157 24 F -0.152 7.152 25 O -0.280 6.280 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.126 0.874 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.309 5.874 -13.785 24.441 hybrid contribution -0.538 -2.071 1.893 2.857 sum -19.846 3.803 -11.892 23.447 Atomic orbital electron populations 1.21757 0.91400 1.03197 1.03126 1.21710 0.94850 0.92010 0.83515 1.22324 1.03134 0.94815 1.02654 1.22852 0.88188 1.00251 0.98945 1.62177 1.08282 1.52731 1.02045 1.22247 0.96574 0.96886 0.91051 1.21304 0.92219 1.02119 0.97766 1.23224 1.02383 1.01682 0.98948 1.84650 0.97104 1.75351 1.33176 1.22726 0.95472 1.40918 1.07334 0.90935 1.25017 0.95275 0.95534 0.97985 1.70030 1.00033 1.42656 1.37750 0.86116 0.78465 0.79127 0.81832 1.19622 1.20570 1.20551 1.22800 1.02913 0.96300 0.89158 1.23145 0.85528 1.00770 0.91516 0.86834 1.20079 0.75005 0.78346 0.85411 1.93202 1.85735 1.40214 1.96557 1.93203 1.87800 1.80228 1.54496 1.93240 1.29100 1.96233 1.96600 1.88010 1.17154 1.78537 1.44338 0.90403 0.91239 0.91649 0.90745 0.92014 0.91042 0.93559 0.88918 0.90167 0.94417 0.91638 0.90539 0.92068 0.92314 0.92340 0.87429 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.85 37.16 0.33 -0.58 16 2 C 0.12 1.01 1.11 -90.57 -0.10 0.91 16 3 C -0.17 -1.36 8.17 37.16 0.30 -1.05 16 4 C 0.03 0.24 4.34 -3.72 -0.02 0.22 16 5 N -0.53 -5.74 4.10 -234.31 -0.96 -6.70 16 6 C 0.06 0.74 4.96 -3.83 -0.02 0.72 16 7 C -0.10 -1.47 5.15 -26.73 -0.14 -1.60 16 8 C -0.11 -2.20 5.67 37.16 0.21 -1.99 16 9 S -0.13 -3.38 21.44 -107.50 -2.30 -5.69 16 10 C -0.52 -14.70 9.50 30.94 0.29 -14.41 16 11 H 0.07 2.00 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.01 5.49 -17.43 -0.10 1.91 16 13 N -0.87 -25.87 13.22 55.49 0.73 -25.13 16 14 Si 0.92 21.43 29.55 -169.99 -5.02 16.40 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 C 0.02 0.18 4.47 -3.71 -0.02 0.17 16 19 C 0.05 0.52 2.39 -26.68 -0.06 0.46 16 20 H 0.11 1.06 6.50 -51.93 -0.34 0.73 16 21 C 0.47 5.16 2.85 37.15 0.11 5.27 16 22 F -0.18 -2.12 16.69 2.25 0.04 -2.08 16 23 F -0.18 -2.01 17.26 2.25 0.04 -1.97 16 24 F -0.17 -1.95 16.86 2.25 0.04 -1.91 16 25 O -0.36 -3.84 9.82 -35.23 -0.35 -4.19 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.67 6.13 -51.93 -0.32 0.35 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 34 H 0.08 0.92 8.04 -51.93 -0.42 0.51 16 35 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 36 H 0.06 1.02 6.51 -51.93 -0.34 0.68 16 37 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 39 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 40 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.11 1.23 6.13 -51.93 -0.32 0.91 16 42 H 0.06 0.66 7.72 -51.93 -0.40 0.26 16 LS Contribution 359.85 15.07 5.42 5.42 Total: -1.00 -30.93 359.85 -7.89 -38.82 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.32 Total: -2.98 kcal Atomic # 6 Polarization: -10.77 SS G_CDS: 0.79 Total: -9.98 kcal Atomic # 7 Polarization: -31.61 SS G_CDS: -0.23 Total: -31.84 kcal Atomic # 8 Polarization: -3.84 SS G_CDS: -0.35 Total: -4.19 kcal Atomic # 9 Polarization: -6.08 SS G_CDS: 0.11 Total: -5.97 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.93 -7.89 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428948443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.717 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds