Wall clock time and date at job start Tue Mar 31 2020 14:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.50581 * 2 1 4 4 C 1.53093 * 109.50905 * 120.08867 * 2 1 3 5 5 N 1.47009 * 109.26071 * 176.78472 * 4 2 1 6 6 C 1.46894 * 111.00295 * 177.60644 * 5 4 2 7 7 C 1.52999 * 109.47406 * 189.68063 * 6 5 4 8 8 C 1.53006 * 109.47326 * 180.02562 * 7 6 5 9 9 S 1.81004 * 109.47033 * 179.97438 * 8 7 6 10 10 C 1.76203 * 99.99806 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99768 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99807 * 179.97438 * 10 9 8 13 13 N 1.31627 * 120.00135 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99668 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47419 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47213 * 120.00275 * 14 12 10 17 17 H 1.48499 * 109.46940 * 240.00257 * 14 12 10 18 18 C 1.47016 * 110.75376 * 301.38357 * 5 4 2 19 19 C 1.53103 * 109.29298 * 58.59374 * 18 5 4 20 20 H 1.08998 * 109.50917 * 63.10882 * 19 18 5 21 21 C 1.52994 * 109.50526 * 183.24310 * 19 18 5 22 22 F 1.39903 * 109.47736 * 59.99770 * 21 19 18 23 23 F 1.39897 * 109.47182 * 179.97438 * 21 19 18 24 24 F 1.39899 * 109.47153 * 299.99756 * 21 19 18 25 25 O 1.43015 * 109.50635 * 239.87423 * 2 1 3 26 26 H 1.08996 * 109.46923 * 299.91572 * 1 2 3 27 27 H 1.09006 * 109.46971 * 59.91313 * 1 2 3 28 28 H 1.08998 * 109.47134 * 179.91203 * 1 2 3 29 29 H 1.08999 * 109.47119 * 180.08827 * 3 2 1 30 30 H 1.09004 * 109.47040 * 300.08745 * 3 2 1 31 31 H 1.09000 * 109.47302 * 60.09036 * 3 2 1 32 32 H 1.09001 * 109.50838 * 56.84905 * 4 2 1 33 33 H 1.09005 * 109.53925 * 296.73782 * 4 2 1 34 34 H 1.08998 * 109.47139 * 309.68167 * 6 5 4 35 35 H 1.08998 * 109.47206 * 69.68306 * 6 5 4 36 36 H 1.09002 * 109.47532 * 300.00117 * 7 6 5 37 37 H 1.09000 * 109.47250 * 59.99929 * 7 6 5 38 38 H 1.09002 * 109.46738 * 299.99637 * 8 7 6 39 39 H 1.09000 * 109.47135 * 59.99710 * 8 7 6 40 40 H 0.97001 * 119.99750 * 179.97438 * 13 12 10 41 41 H 1.09002 * 109.50934 * 178.55099 * 18 5 4 42 42 H 1.09003 * 109.50733 * 298.63693 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0409 1.4422 0.0000 4 6 2.0413 -0.7235 1.2486 5 7 3.5093 -0.7880 1.2047 6 6 4.0447 -1.4259 2.4147 7 6 5.5653 -1.2606 2.4482 8 6 6.1231 -1.9257 3.7083 9 16 7.9221 -1.7308 3.7475 10 6 8.2872 -2.5632 5.2569 11 1 7.4894 -2.9988 5.8400 12 6 9.6004 -2.6600 5.6960 13 7 10.5729 -2.1295 4.9851 14 14 9.9875 -3.5431 7.2959 15 1 8.7282 -4.0471 7.9004 16 1 10.8969 -4.6851 7.0235 17 1 10.6451 -2.5998 8.2354 18 6 3.9640 -1.4884 -0.0053 19 6 3.4335 -0.7581 -1.2420 20 1 3.8534 0.2470 -1.2792 21 6 3.8357 -1.5279 -2.5015 22 9 3.2940 -2.8169 -2.4534 23 9 3.3501 -0.8604 -3.6310 24 9 5.2305 -1.6106 -2.5719 25 8 2.0076 -0.6766 -1.1660 26 1 -0.3633 0.5125 0.8907 27 1 -0.3633 0.5152 -0.8893 28 1 -0.3633 -1.0276 -0.0016 29 1 3.1309 1.4415 -0.0016 30 1 1.6766 1.9567 -0.8892 31 1 1.6792 1.9558 0.8908 32 1 1.6332 -1.7338 1.2766 33 1 1.7274 -0.1793 2.1394 34 1 3.6087 -0.9562 3.2964 35 1 3.7947 -2.4868 2.4071 36 1 6.0015 -1.7304 1.5666 37 1 5.8155 -0.1998 2.4558 38 1 5.6871 -1.4562 4.5901 39 1 5.8729 -2.9866 3.7002 40 1 11.4905 -2.1968 5.2922 41 1 5.0537 -1.5020 -0.0302 42 1 3.5873 -2.5112 0.0029 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428948443.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:05 Heat of formation + Delta-G solvation = -225.996046 kcal Electronic energy + Delta-G solvation = -26663.369781 eV Core-core repulsion = 22353.489592 eV Total energy + Delta-G solvation = -4309.880190 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.122 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -51.22403 -48.74839 -48.70036 -41.36922 -37.74773 -35.15443 -34.61500 -34.03799 -31.17918 -28.27863 -28.10027 -27.56215 -27.33693 -24.28892 -23.58849 -21.94967 -20.79162 -19.59338 -19.51033 -19.43674 -18.99624 -17.42637 -17.05962 -16.89561 -16.72382 -16.31359 -16.03614 -15.68665 -15.52152 -15.40611 -15.18502 -15.12958 -15.04793 -14.85467 -14.82763 -14.69078 -14.03833 -13.58395 -13.51637 -13.28839 -13.18936 -12.98403 -12.95003 -12.87949 -12.83886 -12.56289 -12.44566 -12.38487 -12.19702 -11.72183 -11.57535 -11.32152 -11.15036 -10.80587 -10.29906 -9.51559 -8.65717 -8.37310 -6.13110 1.31677 1.33580 1.38282 1.49494 1.74329 2.13430 2.28236 2.43655 2.82426 2.96226 2.97142 3.32661 3.33062 3.52570 3.65481 3.79313 3.89984 3.96356 4.05914 4.15556 4.23164 4.31859 4.44660 4.48821 4.61567 4.67615 4.75000 4.78364 4.80669 4.84383 4.94189 4.99110 5.14684 5.25348 5.30418 5.37855 5.40358 5.75026 5.83470 5.90518 6.18521 7.05300 8.72236 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.018181 B = 0.002663 C = 0.002437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.712086 B =10511.919912 C =11485.116875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.112 3.888 3 C -0.169 4.169 4 C 0.026 3.974 5 N -0.529 5.529 6 C 0.072 3.928 7 C -0.084 4.084 8 C -0.088 4.088 9 S -0.198 6.198 10 C -0.537 4.537 11 H 0.073 0.927 12 C 0.014 3.986 13 N -0.907 5.907 14 Si 0.994 3.006 15 H -0.262 1.262 16 H -0.273 1.273 17 H -0.271 1.271 18 C 0.017 3.983 19 C 0.057 3.943 20 H 0.124 0.876 21 C 0.466 3.534 22 F -0.183 7.183 23 F -0.178 7.178 24 F -0.174 7.174 25 O -0.374 6.374 26 H 0.098 0.902 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.110 0.890 34 H 0.094 0.906 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.271 0.729 41 H 0.099 0.901 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.016 5.084 -11.932 25.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.074 3.926 3 C -0.226 4.226 4 C -0.102 4.102 5 N -0.253 5.253 6 C -0.057 4.057 7 C -0.123 4.123 8 C -0.237 4.237 9 S 0.030 5.970 10 C -0.685 4.685 11 H 0.091 0.909 12 C -0.190 4.190 13 N -0.544 5.544 14 Si 0.816 3.184 15 H -0.186 1.186 16 H -0.198 1.198 17 H -0.197 1.197 18 C -0.111 4.111 19 C -0.002 4.002 20 H 0.141 0.859 21 C 0.411 3.589 22 F -0.164 7.164 23 F -0.159 7.159 24 F -0.156 7.156 25 O -0.294 6.294 26 H 0.117 0.883 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.072 6.016 -12.857 25.407 hybrid contribution -0.074 -2.085 1.528 2.586 sum -21.146 3.931 -11.328 24.309 Atomic orbital electron populations 1.21783 0.89756 1.03344 1.04262 1.21952 0.96041 0.92078 0.82516 1.22301 1.02249 0.94486 1.03564 1.22956 0.86635 1.00547 1.00072 1.62130 1.09661 1.52249 1.01266 1.22052 0.93949 0.97379 0.92312 1.21180 0.94566 1.01165 0.95389 1.23148 0.97024 1.02288 1.01252 1.84666 1.03659 1.75583 1.33055 1.23073 0.96036 1.41281 1.08083 0.90904 1.26064 0.94983 0.96162 1.01827 1.70161 1.00555 1.43917 1.39761 0.84974 0.78545 0.77907 0.76994 1.18588 1.19822 1.19665 1.22760 1.02455 0.96191 0.89740 1.23066 0.85781 1.00854 0.90546 0.85880 1.20218 0.74760 0.78136 0.85745 1.93185 1.85824 1.40793 1.96604 1.93195 1.87806 1.80212 1.54702 1.93231 1.29453 1.96243 1.96644 1.88011 1.16957 1.78979 1.45410 0.88321 0.91068 0.91997 0.92033 0.91605 0.89680 0.93796 0.87143 0.88772 0.94235 0.92126 0.90996 0.91522 0.92192 0.91998 0.88242 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 8.85 71.98 0.64 -0.81 16 2 C 0.11 1.69 1.11 -10.76 -0.01 1.68 16 3 C -0.17 -2.29 8.17 71.98 0.59 -1.70 16 4 C 0.03 0.41 4.34 86.31 0.37 0.78 16 5 N -0.53 -10.58 4.10 -895.23 -3.67 -14.25 16 6 C 0.07 1.62 4.96 86.30 0.43 2.04 16 7 C -0.08 -2.52 5.15 30.60 0.16 -2.36 16 8 C -0.09 -3.37 5.67 71.98 0.41 -2.96 16 9 S -0.20 -10.43 21.44 -56.49 -1.21 -11.64 16 10 C -0.54 -30.80 9.50 67.95 0.65 -30.16 16 11 H 0.07 4.02 7.80 -2.91 -0.02 4.00 16 12 C 0.01 0.82 5.49 84.86 0.47 1.29 16 13 N -0.91 -54.70 13.22 21.65 0.29 -54.41 16 14 Si 0.99 43.72 29.55 68.60 2.03 45.75 16 15 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 C 0.02 0.36 4.47 86.32 0.39 0.75 16 19 C 0.06 1.14 2.39 30.63 0.07 1.21 16 20 H 0.12 2.19 6.50 -2.39 -0.02 2.18 16 21 C 0.47 10.14 2.85 71.98 0.21 10.35 16 22 F -0.18 -4.36 16.69 44.97 0.75 -3.61 16 23 F -0.18 -3.97 17.26 44.97 0.78 -3.19 16 24 F -0.17 -3.98 16.86 44.97 0.76 -3.22 16 25 O -0.37 -7.45 9.82 -148.98 -1.46 -8.91 16 26 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 1.00 6.13 -2.39 -0.01 0.99 16 30 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 31 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.11 1.38 8.09 -2.38 -0.02 1.36 16 34 H 0.09 1.89 8.04 -2.39 -0.02 1.87 16 35 H 0.04 0.89 8.12 -2.39 -0.02 0.87 16 36 H 0.06 1.88 6.51 -2.39 -0.02 1.86 16 37 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.06 2.28 8.14 -2.40 -0.02 2.26 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.10 2.26 6.13 -2.39 -0.01 2.25 16 42 H 0.05 1.15 7.72 -2.39 -0.02 1.13 16 Total: -1.00 -66.66 359.85 3.63 -63.03 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: 1.02 Total: 10.33 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 4.36 Total: -19.88 kcal Atomic # 7 Polarization: -65.28 SS G_CDS: -3.38 Total: -68.67 kcal Atomic # 8 Polarization: -7.45 SS G_CDS: -1.46 Total: -8.91 kcal Atomic # 9 Polarization: -12.30 SS G_CDS: 2.29 Total: -10.02 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -10.43 SS G_CDS: -1.21 Total: -11.64 kcal Total: -66.66 3.63 -63.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428948443.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.966 kcal (2) G-P(sol) polarization free energy of solvation -66.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds