Wall clock time and date at job start Tue Mar 31 2020 14:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.50700 * 2 1 4 4 C 1.53095 * 109.50690 * 120.08729 * 2 1 3 5 5 N 1.47018 * 109.29409 * 63.06209 * 4 2 1 6 6 C 1.46899 * 111.00176 * 182.41234 * 5 4 2 7 7 C 1.52995 * 109.46995 * 170.00206 * 6 5 4 8 8 C 1.53007 * 109.46752 * 180.02562 * 7 6 5 9 9 S 1.81006 * 109.46943 * 179.97438 * 8 7 6 10 10 C 1.76201 * 99.99727 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00359 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99672 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00069 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00076 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47319 * 90.00062 * 14 12 10 16 16 H 1.48507 * 109.47227 * 209.99818 * 14 12 10 17 17 H 1.48500 * 109.47091 * 330.00029 * 14 12 10 18 18 C 1.47107 * 110.70202 * 58.59593 * 5 4 2 19 19 C 1.53104 * 109.27905 * 301.41042 * 18 5 4 20 20 H 1.08997 * 109.54143 * 296.89167 * 19 18 5 21 21 C 1.53001 * 109.50367 * 176.78301 * 19 18 5 22 22 F 1.39900 * 109.47255 * 300.21894 * 21 19 18 23 23 F 1.39902 * 109.46930 * 60.21915 * 21 19 18 24 24 F 1.39896 * 109.46917 * 180.21635 * 21 19 18 25 25 O 1.43013 * 109.50440 * 239.86907 * 2 1 3 26 26 H 1.09005 * 109.46638 * 299.91254 * 1 2 3 27 27 H 1.08999 * 109.46901 * 59.90795 * 1 2 3 28 28 H 1.08997 * 109.47161 * 179.91152 * 1 2 3 29 29 H 1.08993 * 109.47332 * 180.09120 * 3 2 1 30 30 H 1.09002 * 109.47196 * 300.09280 * 3 2 1 31 31 H 1.09001 * 109.47112 * 60.08329 * 3 2 1 32 32 H 1.09002 * 109.50646 * 183.02107 * 4 2 1 33 33 H 1.09003 * 109.50955 * 303.10660 * 4 2 1 34 34 H 1.08999 * 109.46967 * 290.00766 * 6 5 4 35 35 H 1.08997 * 109.47000 * 50.00171 * 6 5 4 36 36 H 1.09000 * 109.47486 * 299.99602 * 7 6 5 37 37 H 1.08997 * 109.47276 * 60.00133 * 7 6 5 38 38 H 1.09001 * 109.46976 * 299.99561 * 8 7 6 39 39 H 1.08997 * 109.47384 * 59.99878 * 8 7 6 40 40 H 0.97001 * 120.00002 * 180.02562 * 13 12 10 41 41 H 1.08997 * 109.49376 * 181.46945 * 18 5 4 42 42 H 1.08996 * 109.53153 * 61.37331 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0413 -0.7234 1.2486 5 7 1.6109 -2.1286 1.2063 6 6 2.0335 -2.8453 2.4170 7 6 1.3629 -4.2199 2.4560 8 6 1.8025 -4.9661 3.7174 9 16 1.0085 -6.5921 3.7640 10 6 1.6729 -7.2137 5.2729 11 1 2.3556 -6.6095 5.8519 12 6 1.3196 -8.4804 5.7169 13 7 1.8155 -8.9447 6.8444 14 14 0.1405 -9.5264 4.7144 15 1 0.9094 -10.3509 3.7478 16 1 -0.6271 -10.4158 5.6228 17 1 -0.7982 -8.6442 3.9757 18 6 2.1185 -2.7917 -0.0048 19 6 1.6065 -2.0474 -1.2409 20 1 0.5188 -2.1070 -1.2777 21 6 2.1960 -2.6840 -2.5011 22 9 3.5921 -2.6091 -2.4521 23 9 1.8032 -4.0248 -2.5736 24 9 1.7315 -2.0004 -3.6298 25 8 2.0075 -0.6767 -1.1659 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 0.5153 -0.8892 28 1 -0.3633 -1.0276 -0.0016 29 1 3.1309 1.4415 -0.0016 30 1 1.6766 1.9567 -0.8892 31 1 1.6791 1.9558 0.8907 32 1 3.1299 -0.6768 1.2762 33 1 1.6338 -0.2447 2.1391 34 1 3.1163 -2.9694 2.4064 35 1 1.7420 -2.2736 3.2980 36 1 0.2800 -4.0958 2.4667 37 1 1.6544 -4.7916 1.5750 38 1 2.8854 -5.0903 3.7071 39 1 1.5107 -4.3943 4.5982 40 1 1.5689 -9.8301 7.1545 41 1 1.7669 -3.8231 -0.0293 42 1 3.2084 -2.7787 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428948449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:09 Heat of formation + Delta-G solvation = -207.142441 kcal Electronic energy + Delta-G solvation = -26718.078659 eV Core-core repulsion = 22409.016024 eV Total energy + Delta-G solvation = -4309.062636 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.122 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.36053 -47.88543 -47.82443 -40.63888 -36.87165 -34.48779 -32.96260 -32.45592 -30.39564 -27.75053 -26.97567 -26.54933 -25.65899 -23.33360 -22.77263 -20.90330 -20.07219 -18.69885 -18.59679 -18.18476 -17.51134 -16.71207 -16.20440 -15.80618 -15.39255 -15.05290 -14.86009 -14.72897 -14.54682 -14.45673 -14.35001 -14.25396 -13.98825 -13.96604 -13.81705 -13.31385 -12.89532 -12.80753 -12.61072 -12.42512 -12.26966 -12.19633 -12.08357 -11.76194 -11.70531 -11.46939 -11.09427 -11.04471 -10.90601 -10.48252 -10.34270 -10.02846 -9.77623 -9.02577 -8.70616 -8.59258 -6.96991 -6.30403 -4.03047 2.12385 2.87629 2.98074 3.25342 3.29067 3.44040 3.54249 3.64184 3.78669 4.11264 4.29832 4.31201 4.32706 4.51316 4.60234 4.63388 4.76567 4.83705 5.06518 5.09057 5.12589 5.22958 5.24858 5.30204 5.39023 5.42593 5.46470 5.51674 5.56393 5.69776 5.74126 5.84349 5.93688 6.13061 6.36592 6.49816 6.52610 6.63329 6.71751 7.93327 8.41966 9.15484 10.79093 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.002849 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.250530 B = 9825.453593 C =10848.265126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.118 3.882 3 C -0.137 4.137 4 C 0.026 3.974 5 N -0.528 5.528 6 C 0.061 3.939 7 C -0.099 4.099 8 C -0.083 4.083 9 S -0.213 6.213 10 C -0.503 4.503 11 H 0.088 0.912 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.862 3.138 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.017 3.983 19 C 0.051 3.949 20 H 0.114 0.886 21 C 0.466 3.534 22 F -0.175 7.175 23 F -0.171 7.171 24 F -0.176 7.176 25 O -0.360 6.360 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.093 0.907 34 H 0.039 0.961 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.271 0.729 41 H 0.106 0.894 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.822 20.580 -17.286 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.079 3.921 3 C -0.195 4.195 4 C -0.103 4.103 5 N -0.253 5.253 6 C -0.068 4.068 7 C -0.137 4.137 8 C -0.232 4.232 9 S 0.014 5.986 10 C -0.650 4.650 11 H 0.106 0.894 12 C -0.117 4.117 13 N -0.519 5.519 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.112 4.112 19 C -0.009 4.009 20 H 0.131 0.869 21 C 0.411 3.589 22 F -0.157 7.157 23 F -0.153 7.153 24 F -0.157 7.157 25 O -0.280 6.280 26 H 0.090 0.910 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.111 0.889 34 H 0.058 0.942 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.915 20.008 -18.039 27.007 hybrid contribution 1.319 -0.388 0.709 1.547 sum -0.596 19.620 -17.330 26.185 Atomic orbital electron populations 1.22328 0.94161 1.03753 1.02695 1.21714 0.94488 0.92399 0.83484 1.21757 1.02135 0.92448 1.03160 1.22858 0.99100 0.89301 0.98992 1.62199 1.59450 1.01629 1.01975 1.22224 0.97980 0.95383 0.91197 1.21357 1.01570 0.93209 0.97609 1.23006 1.02383 0.98433 0.99361 1.84173 1.63963 1.15541 1.34879 1.22119 1.32619 1.04804 1.05502 0.89440 1.24799 0.95529 0.96746 0.94587 1.69939 1.43113 1.18424 1.20401 0.86671 0.82314 0.81608 0.80760 1.19363 1.20085 1.16130 1.22813 0.99425 0.99761 0.89188 1.23140 1.01405 0.84922 0.91480 0.86860 1.20085 0.76587 0.76739 0.85447 1.93204 1.29905 1.96006 1.96550 1.93236 1.90738 1.34680 1.96602 1.93205 1.88405 1.79545 1.54539 1.88017 1.75639 1.19985 1.44352 0.91013 0.91999 0.90793 0.91615 0.91226 0.90366 0.93471 0.88854 0.94227 0.89989 0.90436 0.91550 0.91582 0.91296 0.91954 0.87541 0.92383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.29 8.17 37.16 0.30 -0.98 16 2 C 0.12 0.97 1.11 -90.57 -0.10 0.87 16 3 C -0.14 -0.87 8.85 37.16 0.33 -0.54 16 4 C 0.03 0.22 4.34 -3.71 -0.02 0.21 16 5 N -0.53 -5.41 4.10 -234.23 -0.96 -6.37 16 6 C 0.06 0.70 4.96 -3.83 -0.02 0.68 16 7 C -0.10 -1.41 5.15 -26.73 -0.14 -1.55 16 8 C -0.08 -1.53 5.67 37.16 0.21 -1.32 16 9 S -0.21 -5.11 19.41 -107.50 -2.09 -7.19 16 10 C -0.50 -14.47 10.04 30.94 0.31 -14.16 16 11 H 0.09 2.68 8.03 -52.49 -0.42 2.26 16 12 C 0.09 2.67 5.50 -17.43 -0.10 2.57 16 13 N -0.88 -26.67 13.97 55.49 0.78 -25.89 16 14 Si 0.86 21.43 27.74 -169.99 -4.71 16.72 16 15 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 17 H -0.24 -5.77 6.74 56.52 0.38 -5.39 16 18 C 0.02 0.17 4.48 -3.66 -0.02 0.16 16 19 C 0.05 0.50 2.38 -26.68 -0.06 0.43 16 20 H 0.11 1.00 6.49 -51.93 -0.34 0.66 16 21 C 0.47 4.94 2.85 37.16 0.11 5.04 16 22 F -0.18 -2.04 16.68 2.25 0.04 -2.00 16 23 F -0.17 -1.86 16.87 2.25 0.04 -1.82 16 24 F -0.18 -1.94 17.26 2.25 0.04 -1.90 16 25 O -0.36 -3.69 9.82 -35.23 -0.35 -4.04 16 26 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.63 6.12 -51.93 -0.32 0.31 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.70 8.09 -51.93 -0.42 0.28 16 34 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 35 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.07 0.95 6.52 -51.93 -0.34 0.61 16 38 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.07 1.27 8.14 -51.92 -0.42 0.85 16 40 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.11 1.13 6.16 -51.93 -0.32 0.81 16 42 H 0.06 0.63 7.71 -51.93 -0.40 0.23 16 LS Contribution 357.18 15.07 5.38 5.38 Total: -1.00 -30.86 357.18 -7.38 -38.24 By element: Atomic # 1 Polarization: 3.84 SS G_CDS: -6.35 Total: -2.52 kcal Atomic # 6 Polarization: -9.41 SS G_CDS: 0.81 Total: -8.60 kcal Atomic # 7 Polarization: -32.08 SS G_CDS: -0.18 Total: -32.26 kcal Atomic # 8 Polarization: -3.69 SS G_CDS: -0.35 Total: -4.04 kcal Atomic # 9 Polarization: -5.84 SS G_CDS: 0.11 Total: -5.72 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.72 kcal Atomic # 16 Polarization: -5.11 SS G_CDS: -2.09 Total: -7.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.86 -7.38 -38.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428948449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.907 kcal (2) G-P(sol) polarization free energy of solvation -30.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds