Wall clock time and date at job start Tue Mar 31 2020 14:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.50700 * 2 1 4 4 C 1.53095 * 109.50690 * 120.08729 * 2 1 3 5 5 N 1.47018 * 109.29409 * 63.06209 * 4 2 1 6 6 C 1.46899 * 111.00176 * 182.41234 * 5 4 2 7 7 C 1.52995 * 109.46995 * 170.00206 * 6 5 4 8 8 C 1.53007 * 109.46752 * 180.02562 * 7 6 5 9 9 S 1.81006 * 109.46943 * 179.97438 * 8 7 6 10 10 C 1.76201 * 99.99727 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00359 * 359.97438 * 10 9 8 12 12 C 1.38796 * 119.99672 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00069 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 120.00076 * 0.02562 * 12 10 9 15 15 H 1.48504 * 109.47319 * 90.00062 * 14 12 10 16 16 H 1.48507 * 109.47227 * 209.99818 * 14 12 10 17 17 H 1.48500 * 109.47091 * 330.00029 * 14 12 10 18 18 C 1.47107 * 110.70202 * 58.59593 * 5 4 2 19 19 C 1.53104 * 109.27905 * 301.41042 * 18 5 4 20 20 H 1.08997 * 109.54143 * 296.89167 * 19 18 5 21 21 C 1.53001 * 109.50367 * 176.78301 * 19 18 5 22 22 F 1.39900 * 109.47255 * 300.21894 * 21 19 18 23 23 F 1.39902 * 109.46930 * 60.21915 * 21 19 18 24 24 F 1.39896 * 109.46917 * 180.21635 * 21 19 18 25 25 O 1.43013 * 109.50440 * 239.86907 * 2 1 3 26 26 H 1.09005 * 109.46638 * 299.91254 * 1 2 3 27 27 H 1.08999 * 109.46901 * 59.90795 * 1 2 3 28 28 H 1.08997 * 109.47161 * 179.91152 * 1 2 3 29 29 H 1.08993 * 109.47332 * 180.09120 * 3 2 1 30 30 H 1.09002 * 109.47196 * 300.09280 * 3 2 1 31 31 H 1.09001 * 109.47112 * 60.08329 * 3 2 1 32 32 H 1.09002 * 109.50646 * 183.02107 * 4 2 1 33 33 H 1.09003 * 109.50955 * 303.10660 * 4 2 1 34 34 H 1.08999 * 109.46967 * 290.00766 * 6 5 4 35 35 H 1.08997 * 109.47000 * 50.00171 * 6 5 4 36 36 H 1.09000 * 109.47486 * 299.99602 * 7 6 5 37 37 H 1.08997 * 109.47276 * 60.00133 * 7 6 5 38 38 H 1.09001 * 109.46976 * 299.99561 * 8 7 6 39 39 H 1.08997 * 109.47384 * 59.99878 * 8 7 6 40 40 H 0.97001 * 120.00002 * 180.02562 * 13 12 10 41 41 H 1.08997 * 109.49376 * 181.46945 * 18 5 4 42 42 H 1.08996 * 109.53153 * 61.37331 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0413 -0.7234 1.2486 5 7 1.6109 -2.1286 1.2063 6 6 2.0335 -2.8453 2.4170 7 6 1.3629 -4.2199 2.4560 8 6 1.8025 -4.9661 3.7174 9 16 1.0085 -6.5921 3.7640 10 6 1.6729 -7.2137 5.2729 11 1 2.3556 -6.6095 5.8519 12 6 1.3196 -8.4804 5.7169 13 7 1.8155 -8.9447 6.8444 14 14 0.1405 -9.5264 4.7144 15 1 0.9094 -10.3509 3.7478 16 1 -0.6271 -10.4158 5.6228 17 1 -0.7982 -8.6442 3.9757 18 6 2.1185 -2.7917 -0.0048 19 6 1.6065 -2.0474 -1.2409 20 1 0.5188 -2.1070 -1.2777 21 6 2.1960 -2.6840 -2.5011 22 9 3.5921 -2.6091 -2.4521 23 9 1.8032 -4.0248 -2.5736 24 9 1.7315 -2.0004 -3.6298 25 8 2.0075 -0.6767 -1.1659 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 0.5153 -0.8892 28 1 -0.3633 -1.0276 -0.0016 29 1 3.1309 1.4415 -0.0016 30 1 1.6766 1.9567 -0.8892 31 1 1.6791 1.9558 0.8907 32 1 3.1299 -0.6768 1.2762 33 1 1.6338 -0.2447 2.1391 34 1 3.1163 -2.9694 2.4064 35 1 1.7420 -2.2736 3.2980 36 1 0.2800 -4.0958 2.4667 37 1 1.6544 -4.7916 1.5750 38 1 2.8854 -5.0903 3.7071 39 1 1.5107 -4.3943 4.5982 40 1 1.5689 -9.8301 7.1545 41 1 1.7669 -3.8231 -0.0293 42 1 3.2084 -2.7787 0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428948449.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:25:08 Heat of formation + Delta-G solvation = -226.033595 kcal Electronic energy + Delta-G solvation = -26718.897841 eV Core-core repulsion = 22409.016024 eV Total energy + Delta-G solvation = -4309.881818 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.122 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.21980 -48.74260 -48.69927 -41.36773 -37.75481 -35.15299 -34.68725 -34.09593 -31.18553 -28.28097 -28.14326 -27.65962 -27.40689 -24.32794 -23.59063 -21.96879 -20.79125 -19.63951 -19.52313 -19.43370 -18.99195 -17.43001 -17.14514 -17.00891 -16.74059 -16.32665 -16.00175 -15.70153 -15.51580 -15.41296 -15.12953 -15.12032 -15.06991 -14.88549 -14.84181 -14.79767 -14.14482 -13.77962 -13.56438 -13.42594 -13.24204 -13.04653 -12.98983 -12.89473 -12.86256 -12.61330 -12.41522 -12.26960 -12.09440 -11.76775 -11.72633 -11.37601 -11.16267 -10.82292 -10.54503 -9.52423 -8.98476 -8.52094 -6.23015 1.12906 1.32315 1.33862 1.47996 1.74133 2.13987 2.24766 2.43200 2.69032 2.82985 2.86230 2.96701 3.32946 3.52782 3.65124 3.79437 3.89473 3.95700 4.04633 4.14355 4.18940 4.29096 4.42482 4.47680 4.61103 4.67553 4.73096 4.77178 4.79685 4.83801 4.94239 4.99040 5.12194 5.24187 5.28505 5.37635 5.69544 5.74505 5.82625 5.89927 6.10075 6.92298 8.61034 Molecular weight = 327.12amu Principal moments of inertia in cm(-1) A = 0.017119 B = 0.002849 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.250530 B = 9825.453593 C =10848.265126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.113 3.887 3 C -0.135 4.135 4 C 0.025 3.975 5 N -0.527 5.527 6 C 0.070 3.930 7 C -0.086 4.086 8 C -0.070 4.070 9 S -0.220 6.220 10 C -0.522 4.522 11 H 0.050 0.950 12 C 0.037 3.963 13 N -0.924 5.924 14 Si 0.925 3.075 15 H -0.263 1.263 16 H -0.264 1.264 17 H -0.227 1.227 18 C 0.016 3.984 19 C 0.057 3.943 20 H 0.125 0.875 21 C 0.466 3.534 22 F -0.183 7.183 23 F -0.174 7.174 24 F -0.178 7.178 25 O -0.374 6.374 26 H 0.084 0.916 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.043 0.957 33 H 0.110 0.890 34 H 0.039 0.961 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.276 0.724 41 H 0.103 0.897 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.985 21.833 -18.467 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.075 3.925 3 C -0.192 4.192 4 C -0.103 4.103 5 N -0.251 5.251 6 C -0.059 4.059 7 C -0.125 4.125 8 C -0.219 4.219 9 S 0.008 5.992 10 C -0.669 4.669 11 H 0.069 0.931 12 C -0.167 4.167 13 N -0.562 5.562 14 Si 0.746 3.254 15 H -0.187 1.187 16 H -0.188 1.188 17 H -0.151 1.151 18 C -0.112 4.112 19 C -0.003 4.003 20 H 0.142 0.858 21 C 0.411 3.589 22 F -0.165 7.165 23 F -0.155 7.155 24 F -0.160 7.160 25 O -0.294 6.294 26 H 0.103 0.897 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.116 0.884 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.057 0.943 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.121 0.879 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.075 21.279 -19.223 28.840 hybrid contribution 1.766 -0.653 1.085 2.173 sum -1.309 20.626 -18.138 27.498 Atomic orbital electron populations 1.22302 0.93457 1.03283 1.03541 1.21939 0.95075 0.93016 0.82510 1.21784 1.01873 0.91326 1.04242 1.22954 0.99007 0.88241 1.00059 1.62165 1.59395 1.02342 1.01243 1.22054 0.97574 0.93930 0.92361 1.21235 1.01789 0.94361 0.95152 1.23071 1.01658 0.95390 1.01750 1.83868 1.64505 1.19134 1.31700 1.22352 1.32209 1.04935 1.07442 0.93138 1.25785 0.97233 0.98054 0.95672 1.70041 1.44704 1.19262 1.22164 0.85718 0.80283 0.79956 0.79418 1.18738 1.18809 1.15059 1.22793 0.99002 0.99764 0.89651 1.23083 1.01803 0.84848 0.90544 0.85754 1.20233 0.76226 0.76659 0.85771 1.93186 1.30641 1.96038 1.96599 1.93228 1.90706 1.34931 1.96640 1.93196 1.88388 1.79590 1.54798 1.88015 1.76048 1.19988 1.45386 0.89728 0.91644 0.91854 0.92060 0.91079 0.88368 0.93885 0.87196 0.94272 0.88821 0.90304 0.91476 0.91904 0.91201 0.91422 0.87897 0.93120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 8.17 71.98 0.59 -1.50 16 2 C 0.11 1.60 1.11 -10.76 -0.01 1.58 16 3 C -0.13 -1.38 8.85 71.98 0.64 -0.75 16 4 C 0.03 0.38 4.34 86.31 0.37 0.75 16 5 N -0.53 -9.64 4.10 -894.97 -3.67 -13.31 16 6 C 0.07 1.44 4.96 86.30 0.43 1.87 16 7 C -0.09 -2.31 5.15 30.59 0.16 -2.15 16 8 C -0.07 -2.51 5.67 71.98 0.41 -2.11 16 9 S -0.22 -10.37 19.41 -56.49 -1.10 -11.47 16 10 C -0.52 -30.55 10.04 67.95 0.68 -29.87 16 11 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 12 C 0.04 2.18 5.50 84.86 0.47 2.64 16 13 N -0.92 -56.82 13.97 21.65 0.30 -56.52 16 14 Si 0.93 43.94 27.74 68.60 1.90 45.84 16 15 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 16 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.23 -10.34 6.74 99.48 0.67 -9.67 16 18 C 0.02 0.32 4.48 86.30 0.39 0.70 16 19 C 0.06 1.04 2.38 30.63 0.07 1.11 16 20 H 0.13 1.98 6.49 -2.39 -0.02 1.97 16 21 C 0.47 9.45 2.85 71.98 0.21 9.65 16 22 F -0.18 -4.16 16.68 44.97 0.75 -3.41 16 23 F -0.17 -3.63 16.87 44.97 0.76 -2.87 16 24 F -0.18 -3.77 17.26 44.97 0.78 -2.99 16 25 O -0.37 -7.07 9.82 -148.98 -1.46 -8.53 16 26 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.93 6.12 -2.39 -0.01 0.92 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.11 1.29 8.09 -2.39 -0.02 1.27 16 34 H 0.04 0.83 8.12 -2.39 -0.02 0.81 16 35 H 0.09 1.76 8.04 -2.39 -0.02 1.74 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 37 H 0.07 1.81 6.52 -2.39 -0.02 1.79 16 38 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.07 2.52 8.14 -2.40 -0.02 2.50 16 40 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 41 H 0.10 2.05 6.16 -2.39 -0.01 2.03 16 42 H 0.05 1.06 7.71 -2.39 -0.02 1.04 16 Total: -1.00 -66.48 357.18 3.64 -62.84 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 0.98 Total: 8.47 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 4.40 Total: -18.06 kcal Atomic # 7 Polarization: -66.47 SS G_CDS: -3.37 Total: -69.83 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -1.46 Total: -8.53 kcal Atomic # 9 Polarization: -11.55 SS G_CDS: 2.29 Total: -9.26 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.90 Total: 45.84 kcal Atomic # 16 Polarization: -10.37 SS G_CDS: -1.10 Total: -11.47 kcal Total: -66.48 3.64 -62.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428948449.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -163.189 kcal (2) G-P(sol) polarization free energy of solvation -66.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -229.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds