Wall clock time and date at job start Tue Mar 31 2020 15:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 N 1.46505 * 109.46842 * 119.99984 * 2 1 3 5 5 C 1.46495 * 120.00051 * 293.47071 * 4 2 1 6 6 C 1.50700 * 109.47313 * 75.63742 * 5 4 2 7 7 C 1.34519 * 125.78652 * 83.16641 * 6 5 4 8 8 C 1.41384 * 106.83897 * 180.02562 * 7 6 5 9 9 C 1.34519 * 106.84259 * 0.02562 * 8 7 6 10 10 O 1.34300 * 108.41655 * 359.73730 * 9 8 7 11 11 S 1.65600 * 120.00031 * 113.47137 * 4 2 1 12 12 O 1.42095 * 104.27800 * 153.92450 * 11 4 2 13 13 O 1.42107 * 104.27701 * 26.06773 * 11 4 2 14 14 C 1.81392 * 104.44920 * 270.00020 * 11 4 2 15 15 C 1.53007 * 109.47225 * 173.35445 * 14 11 4 16 16 C 1.50700 * 115.55045 * 66.06690 * 15 14 11 17 17 H 1.08002 * 119.99778 * 270.96804 * 16 15 14 18 18 C 1.37873 * 120.00059 * 90.96276 * 16 15 14 19 19 N 1.31520 * 119.99653 * 3.80909 * 18 16 15 20 20 Si 1.86797 * 120.00127 * 183.80544 * 18 16 15 21 21 H 1.48502 * 109.47191 * 60.00171 * 20 18 16 22 22 H 1.48500 * 109.47106 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47089 * 300.00138 * 20 18 16 24 24 C 1.53002 * 117.49658 * 280.39772 * 15 14 11 25 25 C 1.53004 * 117.49867 * 211.73843 * 15 14 11 26 26 H 1.09000 * 109.47294 * 300.00240 * 1 2 3 27 27 H 1.09003 * 109.46917 * 60.00204 * 1 2 3 28 28 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46803 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.47147 * 182.96290 * 3 2 1 31 31 H 1.08997 * 109.46951 * 302.95924 * 3 2 1 32 32 H 1.08997 * 109.47113 * 62.96144 * 3 2 1 33 33 H 1.08991 * 109.47273 * 195.64099 * 5 4 2 34 34 H 1.09006 * 109.47226 * 315.64189 * 5 4 2 35 35 H 1.07996 * 126.58311 * 0.04129 * 7 6 5 36 36 H 1.07998 * 126.57973 * 179.97438 * 8 7 6 37 37 H 1.07999 * 125.78919 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47307 * 293.34998 * 14 11 4 39 39 H 1.09004 * 109.47855 * 53.35374 * 14 11 4 40 40 H 0.97003 * 119.99658 * 185.00433 * 19 18 16 41 41 H 1.09001 * 117.49927 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49651 * 145.01771 * 24 15 14 43 43 H 1.08997 * 117.49442 * 214.97589 * 25 15 14 44 44 H 1.08998 * 117.49897 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7860 -0.1123 2.5220 6 6 0.3481 -0.3270 2.9188 7 6 -0.1568 -1.4443 3.4722 8 6 -1.5361 -1.2120 3.6781 9 6 -1.7918 0.0330 3.2378 10 8 -0.6457 0.5662 2.7840 11 16 2.8328 -2.1250 1.0497 12 8 3.6534 -2.1820 2.2084 13 8 3.4037 -2.0726 -0.2506 14 6 1.5363 -3.3914 1.1249 15 6 2.1466 -4.7640 0.8339 16 6 3.1258 -5.2710 1.8611 17 1 4.1748 -5.0296 1.7725 18 6 2.6826 -6.0429 2.9140 19 7 1.4184 -6.3995 2.9815 20 14 3.8775 -6.5824 4.2446 21 1 4.4630 -5.3850 4.8992 22 1 3.1575 -7.3976 5.2556 23 1 4.9622 -7.3941 3.6363 24 6 2.4079 -5.1250 -0.6298 25 6 1.2619 -5.7960 0.1315 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1287 1.4429 -0.0531 31 1 1.6341 1.9714 -0.8623 32 1 1.7207 1.9407 0.9153 33 1 2.4394 -0.5952 3.2486 34 1 1.9997 0.9562 2.4949 35 1 0.3871 -2.3456 3.7133 36 1 -2.2481 -1.9022 4.1061 37 1 -2.7543 0.5226 3.2515 38 1 1.0899 -3.3958 2.1193 39 1 0.7689 -3.1704 0.3831 40 1 1.0909 -6.8803 3.7577 41 1 2.1447 -4.3848 -1.3854 42 1 3.2879 -5.7294 -0.8497 43 1 1.3885 -6.8416 0.4121 44 1 0.2450 -5.4972 -0.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451125411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:11 Heat of formation + Delta-G solvation = -25.687659 kcal Electronic energy + Delta-G solvation = -27997.609575 eV Core-core repulsion = 24238.272149 eV Total energy + Delta-G solvation = -3759.337426 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.51949 -37.54325 -36.75774 -36.42305 -35.16690 -33.08152 -32.02134 -32.01145 -29.53361 -28.28350 -27.15603 -25.70836 -25.38043 -21.68483 -21.21746 -21.11004 -20.34085 -19.45218 -18.51407 -17.38904 -17.34284 -16.47327 -15.95243 -15.67171 -15.35676 -14.77717 -14.52864 -14.36047 -14.04978 -13.75458 -13.44516 -13.14979 -12.88678 -12.78174 -12.64831 -12.42863 -12.22455 -11.95934 -11.75441 -11.73422 -11.34269 -11.30354 -11.22687 -11.05533 -10.97046 -10.90225 -10.62802 -10.60184 -10.42766 -10.08113 -9.75602 -9.66814 -9.10029 -9.04872 -8.48011 -8.39180 -8.05443 -6.13126 -4.25234 0.92843 1.78778 2.72221 3.01882 3.31829 3.32605 3.34610 3.42532 4.37364 4.48585 4.68951 4.75172 4.82605 5.07973 5.13459 5.15654 5.17756 5.22527 5.25328 5.35929 5.47327 5.65118 5.65425 5.68747 5.83706 5.85402 5.94264 5.96498 6.05469 6.10561 6.19836 6.27617 6.30240 6.39069 6.47272 6.61039 6.65559 6.75854 6.78678 7.04157 7.22415 7.25909 7.52810 7.78844 8.20756 8.80554 9.45755 10.93458 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.005686 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.508158 B = 4923.298552 C = 5718.378807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.137 3.863 3 C -0.157 4.157 4 N -0.998 5.998 5 C 0.192 3.808 6 C -0.029 4.029 7 C -0.195 4.195 8 C -0.205 4.205 9 C -0.050 4.050 10 O -0.173 6.173 11 S 2.599 3.401 12 O -0.949 6.949 13 O -0.966 6.966 14 C -0.551 4.551 15 C 0.035 3.965 16 C -0.513 4.513 17 H 0.067 0.933 18 C 0.081 3.919 19 N -0.873 5.873 20 Si 0.887 3.113 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.273 1.273 24 C -0.211 4.211 25 C -0.127 4.127 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.128 0.872 34 H 0.093 0.907 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.198 0.802 38 H 0.129 0.871 39 H 0.099 0.901 40 H 0.263 0.737 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.790 14.271 -1.830 15.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.032 3.968 3 C -0.215 4.215 4 N -0.832 5.832 5 C 0.067 3.933 6 C -0.081 4.081 7 C -0.215 4.215 8 C -0.224 4.224 9 C -0.118 4.118 10 O -0.070 6.070 11 S 2.698 3.302 12 O -0.939 6.939 13 O -0.956 6.956 14 C -0.684 4.684 15 C 0.033 3.967 16 C -0.551 4.551 17 H 0.085 0.915 18 C -0.123 4.123 19 N -0.509 5.509 20 Si 0.713 3.287 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.249 4.249 25 C -0.166 4.166 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.111 0.889 35 H 0.172 0.828 36 H 0.164 0.836 37 H 0.215 0.785 38 H 0.147 0.853 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.111 0.889 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.890 14.369 -1.970 15.654 hybrid contribution -0.632 -0.778 1.000 1.416 sum -6.522 13.591 -0.970 15.106 Atomic orbital electron populations 1.22474 0.95507 1.02647 1.03179 1.20873 0.94217 0.94238 0.87496 1.22069 1.01738 0.95571 1.02167 1.58176 1.74571 1.40119 1.10288 1.19691 0.86771 1.01912 0.84969 1.22962 0.91302 0.89596 1.04195 1.21888 0.95277 0.99749 1.04583 1.21856 0.96712 0.97509 1.06350 1.23953 0.89302 0.95178 1.03361 1.83998 1.16474 1.41537 1.64942 1.05504 0.76674 0.73754 0.74225 1.93523 1.64499 1.85369 1.50516 1.93491 1.75561 1.85784 1.40775 1.30097 1.14977 1.13437 1.09880 1.18317 0.99084 0.88911 0.90416 1.20490 0.93284 1.32901 1.08376 0.91535 1.24937 0.95385 0.94245 0.97783 1.70022 1.14148 1.37977 1.28735 0.86720 0.81342 0.79109 0.81525 1.19312 1.21134 1.19855 1.23235 1.01383 1.04663 0.95599 1.22485 0.92371 0.99374 1.02397 0.90397 0.92002 0.92538 0.88000 0.92025 0.91656 0.92120 0.85460 0.88861 0.82848 0.83560 0.78485 0.85316 0.88247 0.92755 0.90906 0.89592 0.88875 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.15 8.65 37.16 0.32 -1.83 16 2 C 0.14 1.82 3.24 -67.93 -0.22 1.60 16 3 C -0.16 -1.70 9.05 37.16 0.34 -1.36 16 4 N -1.00 -15.31 2.73 -108.57 -0.30 -15.60 16 5 C 0.19 2.64 5.99 -5.20 -0.03 2.61 16 6 C -0.03 -0.40 5.32 -35.62 -0.19 -0.59 16 7 C -0.19 -2.92 10.34 -39.70 -0.41 -3.33 16 8 C -0.21 -2.63 10.91 -39.70 -0.43 -3.07 16 9 C -0.05 -0.55 12.09 29.42 0.36 -0.20 16 10 O -0.17 -2.16 8.21 5.72 0.05 -2.11 16 11 S 2.60 52.16 5.17 -107.50 -0.56 51.61 16 12 O -0.95 -21.73 16.22 -57.54 -0.93 -22.66 16 13 O -0.97 -20.96 16.52 -57.54 -0.95 -21.91 16 14 C -0.55 -11.49 6.03 37.16 0.22 -11.26 16 15 C 0.04 0.86 1.51 -155.65 -0.24 0.62 16 16 C -0.51 -13.99 8.30 -34.44 -0.29 -14.27 16 17 H 0.07 1.86 7.82 -52.49 -0.41 1.45 16 18 C 0.08 2.20 5.41 -17.82 -0.10 2.10 16 19 N -0.87 -23.78 12.17 55.43 0.67 -23.10 16 20 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 24 C -0.21 -4.72 9.96 -26.69 -0.27 -4.99 16 25 C -0.13 -2.95 8.91 -26.69 -0.24 -3.19 16 26 H 0.08 0.93 4.30 -51.93 -0.22 0.71 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 1.44 6.78 -51.93 -0.35 1.08 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.60 6.55 -51.93 -0.34 0.26 16 33 H 0.13 1.83 6.73 -51.93 -0.35 1.48 16 34 H 0.09 1.04 6.34 -51.93 -0.33 0.71 16 35 H 0.15 2.53 6.89 -52.49 -0.36 2.17 16 36 H 0.15 1.66 8.06 -52.49 -0.42 1.24 16 37 H 0.20 1.38 8.06 -52.49 -0.42 0.95 16 38 H 0.13 2.73 6.43 -51.92 -0.33 2.40 16 39 H 0.10 1.82 8.09 -51.92 -0.42 1.40 16 40 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 41 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.09 1.91 8.14 -51.93 -0.42 1.49 16 43 H 0.09 2.32 7.85 -51.93 -0.41 1.91 16 44 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 366.79 15.07 5.53 5.53 Total: -1.00 -31.80 366.79 -9.14 -40.95 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -6.47 Total: 8.27 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: -1.17 Total: -37.15 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.38 Total: -38.71 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -1.84 Total: -46.69 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 52.16 SS G_CDS: -0.56 Total: 51.61 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.80 -9.14 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451125411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.258 kcal (2) G-P(sol) polarization free energy of solvation -31.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds