Wall clock time and date at job start Tue Mar 31 2020 15:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47296 * 2 1 4 4 N 1.46505 * 109.46842 * 119.99984 * 2 1 3 5 5 C 1.46495 * 120.00051 * 293.47071 * 4 2 1 6 6 C 1.50700 * 109.47313 * 75.63742 * 5 4 2 7 7 C 1.34519 * 125.78652 * 83.16641 * 6 5 4 8 8 C 1.41384 * 106.83897 * 180.02562 * 7 6 5 9 9 C 1.34519 * 106.84259 * 0.02562 * 8 7 6 10 10 O 1.34300 * 108.41655 * 359.73730 * 9 8 7 11 11 S 1.65600 * 120.00031 * 113.47137 * 4 2 1 12 12 O 1.42095 * 104.27800 * 153.92450 * 11 4 2 13 13 O 1.42107 * 104.27701 * 26.06773 * 11 4 2 14 14 C 1.81392 * 104.44920 * 270.00020 * 11 4 2 15 15 C 1.53007 * 109.47225 * 173.35445 * 14 11 4 16 16 C 1.50700 * 115.55045 * 66.06690 * 15 14 11 17 17 H 1.08002 * 119.99778 * 270.96804 * 16 15 14 18 18 C 1.37873 * 120.00059 * 90.96276 * 16 15 14 19 19 N 1.31520 * 119.99653 * 3.80909 * 18 16 15 20 20 Si 1.86797 * 120.00127 * 183.80544 * 18 16 15 21 21 H 1.48502 * 109.47191 * 60.00171 * 20 18 16 22 22 H 1.48500 * 109.47106 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47089 * 300.00138 * 20 18 16 24 24 C 1.53002 * 117.49658 * 280.39772 * 15 14 11 25 25 C 1.53004 * 117.49867 * 211.73843 * 15 14 11 26 26 H 1.09000 * 109.47294 * 300.00240 * 1 2 3 27 27 H 1.09003 * 109.46917 * 60.00204 * 1 2 3 28 28 H 1.09002 * 109.47133 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46803 * 239.99784 * 2 1 3 30 30 H 1.08999 * 109.47147 * 182.96290 * 3 2 1 31 31 H 1.08997 * 109.46951 * 302.95924 * 3 2 1 32 32 H 1.08997 * 109.47113 * 62.96144 * 3 2 1 33 33 H 1.08991 * 109.47273 * 195.64099 * 5 4 2 34 34 H 1.09006 * 109.47226 * 315.64189 * 5 4 2 35 35 H 1.07996 * 126.58311 * 0.04129 * 7 6 5 36 36 H 1.07998 * 126.57973 * 179.97438 * 8 7 6 37 37 H 1.07999 * 125.78919 * 180.02562 * 9 8 7 38 38 H 1.09000 * 109.47307 * 293.34998 * 14 11 4 39 39 H 1.09004 * 109.47855 * 53.35374 * 14 11 4 40 40 H 0.97003 * 119.99658 * 185.00433 * 19 18 16 41 41 H 1.09001 * 117.49927 * 359.97438 * 24 15 14 42 42 H 1.08999 * 117.49651 * 145.01771 * 24 15 14 43 43 H 1.08997 * 117.49442 * 214.97589 * 25 15 14 44 44 H 1.08998 * 117.49897 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.7860 -0.1123 2.5220 6 6 0.3481 -0.3270 2.9188 7 6 -0.1568 -1.4443 3.4722 8 6 -1.5361 -1.2120 3.6781 9 6 -1.7918 0.0330 3.2378 10 8 -0.6457 0.5662 2.7840 11 16 2.8328 -2.1250 1.0497 12 8 3.6534 -2.1820 2.2084 13 8 3.4037 -2.0726 -0.2506 14 6 1.5363 -3.3914 1.1249 15 6 2.1466 -4.7640 0.8339 16 6 3.1258 -5.2710 1.8611 17 1 4.1748 -5.0296 1.7725 18 6 2.6826 -6.0429 2.9140 19 7 1.4184 -6.3995 2.9815 20 14 3.8775 -6.5824 4.2446 21 1 4.4630 -5.3850 4.8992 22 1 3.1575 -7.3976 5.2556 23 1 4.9622 -7.3941 3.6363 24 6 2.4079 -5.1250 -0.6298 25 6 1.2619 -5.7960 0.1315 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 3.1287 1.4429 -0.0531 31 1 1.6341 1.9714 -0.8623 32 1 1.7207 1.9407 0.9153 33 1 2.4394 -0.5952 3.2486 34 1 1.9997 0.9562 2.4949 35 1 0.3871 -2.3456 3.7133 36 1 -2.2481 -1.9022 4.1061 37 1 -2.7543 0.5226 3.2515 38 1 1.0899 -3.3958 2.1193 39 1 0.7689 -3.1704 0.3831 40 1 1.0909 -6.8803 3.7577 41 1 2.1447 -4.3848 -1.3854 42 1 3.2879 -5.7294 -0.8497 43 1 1.3885 -6.8416 0.4121 44 1 0.2450 -5.4972 -0.1229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451125411.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:10 Heat of formation + Delta-G solvation = -45.221405 kcal Electronic energy + Delta-G solvation = -27998.456621 eV Core-core repulsion = 24238.272149 eV Total energy + Delta-G solvation = -3760.184473 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.51350 -38.67499 -38.59052 -38.10312 -36.85872 -34.11216 -34.07232 -33.03518 -30.61787 -29.97232 -28.08242 -27.50727 -26.68669 -22.99233 -22.70957 -22.25285 -21.59907 -21.12934 -19.87024 -18.87720 -18.46403 -18.23098 -17.20704 -16.93467 -16.82639 -16.69576 -15.95290 -15.64351 -15.50966 -15.14433 -14.90037 -14.43268 -14.01223 -13.97656 -13.79879 -13.69306 -13.57570 -13.43785 -13.23620 -13.13335 -12.95827 -12.87433 -12.85175 -12.62242 -12.47116 -12.27006 -12.24847 -12.13948 -11.89882 -11.66924 -11.50245 -11.05139 -10.78865 -10.49130 -10.35120 -9.82939 -9.39349 -8.20132 -6.36570 -0.63708 0.76761 1.37275 1.39215 1.47703 1.64981 1.90109 2.12508 2.38018 2.90174 3.04662 3.26477 3.38590 3.56837 3.82215 3.98037 4.08066 4.12732 4.19976 4.22655 4.29883 4.37558 4.48489 4.52146 4.57245 4.64974 4.77848 4.83236 4.84850 4.96315 4.96784 5.02571 5.04718 5.13555 5.20509 5.24681 5.41265 5.43678 5.49345 5.60279 5.63562 5.66237 5.67803 6.20227 6.22279 6.69982 7.35550 8.85841 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012963 B = 0.005686 C = 0.004895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.508158 B = 4923.298552 C = 5718.378807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.127 3.873 3 C -0.154 4.154 4 N -0.987 5.987 5 C 0.188 3.812 6 C -0.030 4.030 7 C -0.220 4.220 8 C -0.230 4.230 9 C -0.025 4.025 10 O -0.168 6.168 11 S 2.614 3.386 12 O -0.985 6.985 13 O -0.984 6.984 14 C -0.549 4.549 15 C 0.007 3.993 16 C -0.533 4.533 17 H 0.048 0.952 18 C 0.044 3.956 19 N -0.890 5.890 20 Si 0.931 3.069 21 H -0.274 1.274 22 H -0.273 1.273 23 H -0.269 1.269 24 C -0.200 4.200 25 C -0.126 4.126 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.092 0.908 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.155 0.845 37 H 0.244 0.756 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.265 0.735 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.070 0.930 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.417 16.639 -2.348 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.022 3.978 3 C -0.212 4.212 4 N -0.824 5.824 5 C 0.063 3.937 6 C -0.081 4.081 7 C -0.241 4.241 8 C -0.249 4.249 9 C -0.092 4.092 10 O -0.064 6.064 11 S 2.713 3.287 12 O -0.975 6.975 13 O -0.975 6.975 14 C -0.682 4.682 15 C 0.005 3.995 16 C -0.571 4.571 17 H 0.066 0.934 18 C -0.159 4.159 19 N -0.526 5.526 20 Si 0.755 3.245 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.194 1.194 24 C -0.237 4.237 25 C -0.165 4.165 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.073 0.927 31 H 0.108 0.892 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.173 0.827 37 H 0.260 0.740 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.074 0.926 41 H 0.114 0.886 42 H 0.099 0.901 43 H 0.088 0.912 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.515 16.713 -2.496 18.494 hybrid contribution -0.187 -1.451 1.143 1.856 sum -7.702 15.263 -1.353 17.149 Atomic orbital electron populations 1.22454 0.94209 1.02179 1.04533 1.21186 0.95292 0.95369 0.85907 1.22077 1.01381 0.93837 1.03936 1.57806 1.74375 1.38267 1.11941 1.19834 0.86839 1.03404 0.83668 1.22715 0.91524 0.89475 1.04409 1.21873 0.96724 0.99482 1.06010 1.22046 0.95882 0.99041 1.07937 1.24752 0.89948 0.94255 1.00267 1.84011 1.16619 1.41007 1.64794 1.04726 0.76469 0.74373 0.73093 1.93471 1.66025 1.86259 1.51773 1.93454 1.76253 1.86384 1.41398 1.29996 1.15799 1.12319 1.10047 1.18440 0.99532 0.90721 0.90825 1.20666 0.93155 1.33444 1.09786 0.93427 1.25492 0.96735 0.94401 0.99300 1.70074 1.14963 1.38377 1.29185 0.86030 0.79997 0.78638 0.79788 1.19953 1.19755 1.19387 1.23267 1.00789 1.04561 0.95107 1.22394 0.93523 0.97984 1.02562 0.90111 0.89515 0.93924 0.89021 0.92731 0.89220 0.90924 0.86820 0.85616 0.85574 0.82686 0.73995 0.86272 0.85864 0.92592 0.88582 0.90072 0.91173 0.89948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.69 8.65 71.98 0.62 -3.06 16 2 C 0.13 3.10 3.24 44.99 0.15 3.24 16 3 C -0.15 -2.84 9.05 71.98 0.65 -2.19 16 4 N -0.99 -29.47 2.73 -497.41 -1.36 -30.82 16 5 C 0.19 4.97 5.99 85.63 0.51 5.48 16 6 C -0.03 -0.78 5.32 24.83 0.13 -0.65 16 7 C -0.22 -6.64 10.34 22.19 0.23 -6.41 16 8 C -0.23 -5.59 10.91 22.19 0.24 -5.35 16 9 C -0.02 -0.46 12.09 66.97 0.81 0.35 16 10 O -0.17 -3.68 8.21 -2.45 -0.02 -3.70 16 11 S 2.61 106.22 5.17 -56.49 -0.29 105.92 16 12 O -0.99 -46.67 16.22 -127.65 -2.07 -48.74 16 13 O -0.98 -42.78 16.52 -127.65 -2.11 -44.89 16 14 C -0.55 -23.21 6.03 71.98 0.43 -22.78 16 15 C 0.01 0.35 1.51 -52.92 -0.08 0.26 16 16 C -0.53 -29.95 8.30 25.60 0.21 -29.74 16 17 H 0.05 2.78 7.82 -2.91 -0.02 2.75 16 18 C 0.04 2.41 5.41 84.65 0.46 2.87 16 19 N -0.89 -49.41 12.17 21.45 0.26 -49.15 16 20 Si 0.93 44.26 29.54 68.60 2.03 46.29 16 21 H -0.27 -13.22 7.11 99.48 0.71 -12.51 16 22 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 23 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 24 C -0.20 -8.92 9.96 30.62 0.30 -8.61 16 25 C -0.13 -5.86 8.91 30.62 0.27 -5.59 16 26 H 0.08 1.66 4.30 -2.39 -0.01 1.65 16 27 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.09 2.44 6.78 -2.39 -0.02 2.42 16 30 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.17 6.55 -2.39 -0.02 1.16 16 33 H 0.11 3.34 6.73 -2.39 -0.02 3.32 16 34 H 0.13 2.49 6.34 -2.38 -0.02 2.48 16 35 H 0.13 4.46 6.89 -2.91 -0.02 4.44 16 36 H 0.16 3.36 8.06 -2.91 -0.02 3.34 16 37 H 0.24 2.10 8.06 -2.91 -0.02 2.07 16 38 H 0.12 5.26 6.43 -2.39 -0.02 5.24 16 39 H 0.12 4.45 8.09 -2.39 -0.02 4.43 16 40 H 0.26 14.01 8.32 -92.71 -0.77 13.23 16 41 H 0.10 3.79 8.14 -2.39 -0.02 3.77 16 42 H 0.08 3.64 8.14 -2.39 -0.02 3.62 16 43 H 0.07 3.57 7.85 -2.39 -0.02 3.55 16 44 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 Total: -1.00 -69.95 366.79 2.38 -67.57 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 1.00 Total: 29.69 kcal Atomic # 6 Polarization: -77.12 SS G_CDS: 4.95 Total: -72.17 kcal Atomic # 7 Polarization: -78.88 SS G_CDS: -1.10 Total: -79.97 kcal Atomic # 8 Polarization: -93.13 SS G_CDS: -4.20 Total: -97.33 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 106.22 SS G_CDS: -0.29 Total: 105.92 kcal Total: -69.95 2.38 -67.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451125411.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.348 kcal (2) G-P(sol) polarization free energy of solvation -69.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds