Wall clock time and date at job start Tue Mar 31 2020 15:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 C 1.52994 * 109.47213 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47213 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47433 * 179.97438 * 5 4 3 7 7 C 1.35893 * 117.00392 * 179.97438 * 6 5 4 8 8 C 1.38736 * 120.05957 * 180.02562 * 7 6 5 9 9 C 1.38138 * 119.94337 * 180.30421 * 8 7 6 10 10 C 1.38271 * 120.05803 * 359.41293 * 9 8 7 11 11 S 1.76199 * 119.94634 * 180.30266 * 10 9 8 12 12 O 1.42107 * 106.40105 * 23.84314 * 11 10 9 13 13 O 1.42099 * 106.40478 * 156.76235 * 11 10 9 14 14 N 1.65597 * 107.22072 * 270.30507 * 11 10 9 15 15 C 1.46504 * 120.00240 * 64.99824 * 14 11 10 16 16 C 1.50692 * 109.47472 * 165.00089 * 15 14 11 17 17 H 1.07999 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00382 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99795 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00346 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47357 * 90.00000 * 20 18 16 22 22 H 1.48504 * 109.47174 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47005 * 329.99990 * 20 18 16 24 24 C 1.38259 * 120.10889 * 0.60974 * 10 9 8 25 25 C 1.38146 * 120.05909 * 359.67363 * 24 10 9 26 26 H 1.09006 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47016 * 299.99478 * 1 2 3 28 28 H 1.09001 * 109.47245 * 59.99827 * 1 2 3 29 29 H 1.09002 * 109.47478 * 240.00788 * 2 1 3 30 30 H 1.08993 * 109.47401 * 120.00447 * 2 1 3 31 31 H 1.09007 * 109.47084 * 60.00040 * 3 2 1 32 32 H 1.08998 * 109.47684 * 300.00801 * 3 2 1 33 33 H 1.08994 * 109.47469 * 60.00410 * 4 3 2 34 34 H 1.09001 * 109.47551 * 299.99998 * 4 3 2 35 35 H 1.09002 * 109.47184 * 60.00229 * 5 4 3 36 36 H 1.09001 * 109.46987 * 299.99936 * 5 4 3 37 37 H 1.08002 * 120.02291 * 0.02562 * 8 7 6 38 38 H 1.08004 * 119.96766 * 179.69880 * 9 8 7 39 39 H 0.96998 * 120.00083 * 245.00162 * 14 11 10 40 40 H 1.09000 * 109.47252 * 285.00560 * 15 14 11 41 41 H 1.09006 * 109.46833 * 44.99656 * 15 14 11 42 42 H 0.97000 * 120.00256 * 180.02562 * 19 18 16 43 43 H 1.08006 * 119.97147 * 179.69573 * 24 10 9 44 44 H 1.07993 * 120.03340 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 8 5.5088 2.8853 0.0025 7 6 6.1257 4.0961 0.0027 8 6 7.5111 4.1702 0.0033 9 6 8.1357 5.4023 0.0098 10 6 7.3815 6.5612 0.0034 11 16 8.1813 8.1312 0.0037 12 8 9.4772 7.9214 -0.5406 13 8 7.2501 9.0561 -0.5408 14 7 8.4037 8.5678 1.5855 15 6 9.2941 7.7827 2.4440 16 6 9.6136 8.5690 3.6892 17 1 9.1956 9.5552 3.8271 18 6 10.4403 8.0299 4.6519 19 7 10.9506 6.8296 4.4833 20 14 10.8358 9.0044 6.1957 21 1 9.8293 8.7004 7.2443 22 1 12.1877 8.6311 6.6840 23 1 10.8049 10.4564 5.8860 24 6 6.0007 6.4901 0.0033 25 6 5.3712 5.2604 0.0027 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9565 -0.8899 33 1 3.9337 0.9288 -0.8891 34 1 3.9330 0.9290 0.8908 35 1 3.7162 3.3987 0.8913 36 1 3.7169 3.3992 -0.8887 37 1 8.1007 3.2653 0.0032 38 1 9.2142 5.4604 0.0152 39 1 7.9443 9.3434 1.9437 40 1 8.8031 6.8493 2.7197 41 1 10.2165 7.5629 1.9063 42 1 11.5320 6.4501 5.1607 43 1 5.4138 7.3967 0.0033 44 1 4.2927 5.2053 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000487338662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:25 Heat of formation + Delta-G solvation = -115.871985 kcal Electronic energy + Delta-G solvation = -24853.463323 eV Core-core repulsion = 21090.215211 eV Total energy + Delta-G solvation = -3763.248112 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.28796 -37.76877 -36.66724 -36.17847 -35.28136 -34.59588 -32.16587 -32.12973 -31.03528 -29.97651 -26.73510 -26.70301 -23.43768 -22.89356 -22.46910 -21.70276 -21.39407 -19.02392 -18.39084 -17.53918 -17.01652 -16.77991 -16.21905 -15.85706 -15.54406 -15.23765 -14.70812 -14.60876 -14.28036 -13.86036 -13.83756 -13.66034 -13.40295 -13.28094 -12.91210 -12.75175 -12.51143 -12.11491 -12.00396 -11.82162 -11.78656 -11.59692 -11.55828 -11.45516 -11.24461 -11.13666 -10.95647 -10.93482 -10.90717 -10.74344 -10.53279 -10.11113 -9.42619 -9.05488 -8.91187 -8.55951 -8.21307 -6.17399 -4.21815 0.89663 1.15492 1.33736 2.86120 3.25429 3.32034 3.35185 3.45997 3.84887 4.32122 4.34977 4.35629 4.40682 4.55149 4.63754 4.68867 4.72247 4.84526 4.96446 5.01949 5.08398 5.19584 5.21580 5.28157 5.32377 5.39432 5.48964 5.51759 5.60358 5.61863 5.72840 5.83149 5.89457 5.95442 5.99683 6.17777 6.25621 6.46544 6.66889 7.21075 7.29571 7.35504 7.80491 7.82275 8.18710 8.82339 9.42988 10.92954 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.002543 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.182016 B =11006.545302 C =12276.699850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.120 4.120 5 C 0.055 3.945 6 O -0.312 6.312 7 C 0.177 3.823 8 C -0.172 4.172 9 C 0.026 3.974 10 C -0.705 4.705 11 S 2.695 3.305 12 O -0.964 6.964 13 O -0.983 6.983 14 N -1.104 6.104 15 C 0.246 3.754 16 C -0.529 4.529 17 H 0.066 0.934 18 C 0.061 3.939 19 N -0.890 5.890 20 Si 0.904 3.096 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.272 1.272 24 C 0.020 3.980 25 C -0.235 4.235 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.139 0.861 38 H 0.150 0.850 39 H 0.410 0.590 40 H 0.022 0.978 41 H 0.039 0.961 42 H 0.266 0.734 43 H 0.141 0.859 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.438 -11.455 -9.021 22.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.020 4.020 6 O -0.225 6.225 7 C 0.130 3.870 8 C -0.192 4.192 9 C 0.007 3.993 10 C -0.791 4.791 11 S 2.783 3.217 12 O -0.954 6.954 13 O -0.973 6.973 14 N -0.866 5.866 15 C 0.122 3.878 16 C -0.569 4.569 17 H 0.084 0.916 18 C -0.143 4.143 19 N -0.528 5.528 20 Si 0.731 3.269 21 H -0.206 1.206 22 H -0.210 1.210 23 H -0.197 1.197 24 C 0.001 3.999 25 C -0.254 4.254 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.157 0.843 38 H 0.167 0.833 39 H 0.244 0.756 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.158 0.842 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -16.900 -11.516 -9.745 22.654 hybrid contribution -0.482 0.165 1.462 1.548 sum -17.382 -11.351 -8.283 22.352 Atomic orbital electron populations 1.21781 0.95695 1.01732 1.01905 1.21508 0.95970 0.96359 1.02340 1.21535 0.93834 0.97584 1.02583 1.21569 0.95549 0.94670 1.03924 1.22922 0.78251 0.99025 1.01796 1.86071 1.21575 1.27134 1.87718 1.19232 0.92482 0.83960 0.91304 1.20543 0.91286 0.99038 1.08303 1.20844 1.00498 0.90158 0.87774 1.31066 1.04920 1.22388 1.20747 1.01683 0.73548 0.73195 0.73279 1.93559 1.38331 1.86109 1.77372 1.93513 1.64810 1.61136 1.77838 1.55450 1.60064 1.40774 1.30307 1.19087 0.88165 0.90753 0.89748 1.21196 1.30108 1.02788 1.02800 0.91611 1.24975 0.95489 0.95142 0.98652 1.69933 1.32281 1.15420 1.35147 0.86412 0.77718 0.80226 0.82553 1.20562 1.21035 1.19702 1.20669 0.92459 0.97953 0.88814 1.21271 1.00111 0.92385 1.11658 0.92678 0.92653 0.92711 0.91845 0.91776 0.91528 0.91603 0.90735 0.90622 0.91638 0.91765 0.84340 0.83250 0.75576 0.96033 0.94292 0.92471 0.84167 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 9.91 37.16 0.37 -0.40 16 2 C -0.12 -0.67 5.93 -26.73 -0.16 -0.83 16 3 C -0.12 -0.67 5.21 -26.73 -0.14 -0.81 16 4 C -0.12 -0.85 5.58 -26.73 -0.15 -1.00 16 5 C 0.06 0.49 4.74 37.16 0.18 0.66 16 6 O -0.31 -3.86 10.14 -19.40 -0.20 -4.06 16 7 C 0.18 2.46 6.69 -39.21 -0.26 2.20 16 8 C -0.17 -2.55 9.99 -39.43 -0.39 -2.94 16 9 C 0.03 0.43 9.51 -39.61 -0.38 0.06 16 10 C -0.71 -11.87 5.95 -39.56 -0.24 -12.11 16 11 S 2.69 50.42 5.73 -107.50 -0.62 49.80 16 12 O -0.96 -20.73 16.76 -57.17 -0.96 -21.68 16 13 O -0.98 -19.00 17.28 -57.17 -0.99 -19.98 16 14 N -1.10 -22.28 5.99 -11.65 -0.07 -22.35 16 15 C 0.25 6.04 5.98 -5.20 -0.03 6.01 16 16 C -0.53 -14.14 9.27 -34.44 -0.32 -14.45 16 17 H 0.07 1.68 7.65 -52.49 -0.40 1.28 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -25.28 13.29 55.43 0.74 -24.54 16 20 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 C 0.02 0.30 9.51 -39.61 -0.38 -0.08 16 25 C -0.23 -3.10 9.04 -39.43 -0.36 -3.45 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.54 7.66 -51.93 -0.40 0.14 16 36 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 37 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.15 2.41 7.62 -52.48 -0.40 2.01 16 39 H 0.41 7.53 8.54 -34.47 -0.29 7.24 16 40 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.04 1.03 7.75 -51.93 -0.40 0.63 16 42 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.14 1.82 7.61 -52.48 -0.40 1.42 16 44 H 0.13 1.33 6.30 -52.49 -0.33 1.00 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -32.62 381.40 -10.53 -43.15 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.81 Total: 3.76 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: -2.35 Total: -25.60 kcal Atomic # 7 Polarization: -47.56 SS G_CDS: 0.67 Total: -46.89 kcal Atomic # 8 Polarization: -43.58 SS G_CDS: -2.14 Total: -45.72 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 16 Polarization: 50.42 SS G_CDS: -0.62 Total: 49.80 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.62 -10.53 -43.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487338662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.723 kcal (2) G-P(sol) polarization free energy of solvation -32.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds