Wall clock time and date at job start Tue Mar 31 2020 15:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46902 * 2 1 4 4 C 1.52994 * 109.47213 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47213 * 180.02562 * 4 3 2 6 6 O 1.42899 * 109.47433 * 179.97438 * 5 4 3 7 7 C 1.35893 * 117.00392 * 179.97438 * 6 5 4 8 8 C 1.38736 * 120.05957 * 180.02562 * 7 6 5 9 9 C 1.38138 * 119.94337 * 180.30421 * 8 7 6 10 10 C 1.38271 * 120.05803 * 359.41293 * 9 8 7 11 11 S 1.76199 * 119.94634 * 180.30266 * 10 9 8 12 12 O 1.42107 * 106.40105 * 23.84314 * 11 10 9 13 13 O 1.42099 * 106.40478 * 156.76235 * 11 10 9 14 14 N 1.65597 * 107.22072 * 270.30507 * 11 10 9 15 15 C 1.46504 * 120.00240 * 64.99824 * 14 11 10 16 16 C 1.50692 * 109.47472 * 165.00089 * 15 14 11 17 17 H 1.07999 * 120.00014 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00382 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99795 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 120.00346 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47357 * 90.00000 * 20 18 16 22 22 H 1.48504 * 109.47174 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47005 * 329.99990 * 20 18 16 24 24 C 1.38259 * 120.10889 * 0.60974 * 10 9 8 25 25 C 1.38146 * 120.05909 * 359.67363 * 24 10 9 26 26 H 1.09006 * 109.46820 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47016 * 299.99478 * 1 2 3 28 28 H 1.09001 * 109.47245 * 59.99827 * 1 2 3 29 29 H 1.09002 * 109.47478 * 240.00788 * 2 1 3 30 30 H 1.08993 * 109.47401 * 120.00447 * 2 1 3 31 31 H 1.09007 * 109.47084 * 60.00040 * 3 2 1 32 32 H 1.08998 * 109.47684 * 300.00801 * 3 2 1 33 33 H 1.08994 * 109.47469 * 60.00410 * 4 3 2 34 34 H 1.09001 * 109.47551 * 299.99998 * 4 3 2 35 35 H 1.09002 * 109.47184 * 60.00229 * 5 4 3 36 36 H 1.09001 * 109.46987 * 299.99936 * 5 4 3 37 37 H 1.08002 * 120.02291 * 0.02562 * 8 7 6 38 38 H 1.08004 * 119.96766 * 179.69880 * 9 8 7 39 39 H 0.96998 * 120.00083 * 245.00162 * 14 11 10 40 40 H 1.09000 * 109.47252 * 285.00560 * 15 14 11 41 41 H 1.09006 * 109.46833 * 44.99656 * 15 14 11 42 42 H 0.97000 * 120.00256 * 180.02562 * 19 18 16 43 43 H 1.08006 * 119.97147 * 179.69573 * 24 10 9 44 44 H 1.07993 * 120.03340 * 180.02562 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0013 6 8 5.5088 2.8853 0.0025 7 6 6.1257 4.0961 0.0027 8 6 7.5111 4.1702 0.0033 9 6 8.1357 5.4023 0.0098 10 6 7.3815 6.5612 0.0034 11 16 8.1813 8.1312 0.0037 12 8 9.4772 7.9214 -0.5406 13 8 7.2501 9.0561 -0.5408 14 7 8.4037 8.5678 1.5855 15 6 9.2941 7.7827 2.4440 16 6 9.6136 8.5690 3.6892 17 1 9.1956 9.5552 3.8271 18 6 10.4403 8.0299 4.6519 19 7 10.9506 6.8296 4.4833 20 14 10.8358 9.0044 6.1957 21 1 9.8293 8.7004 7.2443 22 1 12.1877 8.6311 6.6840 23 1 10.8049 10.4564 5.8860 24 6 6.0007 6.4901 0.0033 25 6 5.3712 5.2604 0.0027 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6766 1.9564 0.8900 32 1 1.6765 1.9565 -0.8899 33 1 3.9337 0.9288 -0.8891 34 1 3.9330 0.9290 0.8908 35 1 3.7162 3.3987 0.8913 36 1 3.7169 3.3992 -0.8887 37 1 8.1007 3.2653 0.0032 38 1 9.2142 5.4604 0.0152 39 1 7.9443 9.3434 1.9437 40 1 8.8031 6.8493 2.7197 41 1 10.2165 7.5629 1.9063 42 1 11.5320 6.4501 5.1607 43 1 5.4138 7.3967 0.0033 44 1 4.2927 5.2053 0.0021 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487338662.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:24 Heat of formation + Delta-G solvation = -137.102098 kcal Electronic energy + Delta-G solvation = -24854.383930 eV Core-core repulsion = 21090.215211 eV Total energy + Delta-G solvation = -3764.168718 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31004 -38.77849 -38.25946 -36.89399 -36.72202 -36.45013 -34.11493 -32.83220 -32.12317 -31.02889 -28.71696 -27.33372 -24.54858 -24.27021 -23.98237 -22.46669 -21.90681 -20.54014 -19.48220 -19.19318 -18.45804 -17.68397 -17.46291 -17.42429 -16.88855 -16.27421 -16.13153 -15.80050 -15.36239 -14.97848 -14.71855 -14.63232 -14.50317 -14.42690 -14.27134 -14.07560 -13.68794 -13.58737 -13.52065 -13.18336 -13.08701 -12.75534 -12.67920 -12.53790 -12.49019 -12.11368 -12.08500 -11.94048 -11.91402 -11.73729 -11.68828 -11.41304 -11.40472 -10.83580 -10.20981 -10.10374 -9.67653 -8.23868 -6.35828 -0.51136 -0.15668 0.19243 1.45143 1.46407 1.57368 1.97029 2.11648 2.40564 2.48015 2.84649 3.10990 3.37408 3.63920 3.71855 3.87531 3.87922 4.06443 4.13696 4.20618 4.23056 4.36331 4.40735 4.45914 4.61596 4.63427 4.75264 4.80427 4.85763 4.88909 4.97976 5.03472 5.03874 5.08684 5.17791 5.28963 5.29212 5.32752 5.39412 5.47768 5.54398 5.75528 5.99475 6.22443 6.33857 6.78709 7.33593 8.87180 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.013147 B = 0.002543 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.182016 B =11006.545302 C =12276.699850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.115 4.115 5 C 0.044 3.956 6 O -0.319 6.319 7 C 0.181 3.819 8 C -0.182 4.182 9 C 0.007 3.993 10 C -0.718 4.718 11 S 2.712 3.288 12 O -0.998 6.998 13 O -0.986 6.986 14 N -1.103 6.103 15 C 0.259 3.741 16 C -0.549 4.549 17 H 0.075 0.925 18 C 0.007 3.993 19 N -0.925 5.925 20 Si 0.973 3.027 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.264 1.264 24 C 0.014 3.986 25 C -0.227 4.227 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.140 0.860 39 H 0.418 0.582 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.268 0.732 43 H 0.159 0.841 44 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.668 -11.575 -8.599 24.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.153 4.153 5 C -0.030 4.030 6 O -0.232 6.232 7 C 0.133 3.867 8 C -0.201 4.201 9 C -0.013 4.013 10 C -0.808 4.808 11 S 2.804 3.196 12 O -0.988 6.988 13 O -0.977 6.977 14 N -0.865 5.865 15 C 0.134 3.866 16 C -0.589 4.589 17 H 0.093 0.907 18 C -0.193 4.193 19 N -0.564 5.564 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.188 1.188 24 C -0.005 4.005 25 C -0.247 4.247 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.253 0.747 40 H 0.029 0.971 41 H 0.030 0.970 42 H 0.077 0.923 43 H 0.177 0.823 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -19.137 -11.590 -9.330 24.241 hybrid contribution 0.088 0.062 1.253 1.257 sum -19.049 -11.528 -8.077 23.685 Atomic orbital electron populations 1.21783 0.95325 1.01978 1.02047 1.21516 0.96292 0.96219 1.02273 1.21509 0.92605 0.97846 1.03102 1.21560 0.96464 0.93618 1.03628 1.23275 0.76248 1.00417 1.03048 1.86084 1.23716 1.26294 1.87100 1.19336 0.92320 0.84950 0.90053 1.20712 0.92364 0.98834 1.08198 1.20869 1.00317 0.91015 0.89075 1.30624 1.05991 1.20662 1.23531 1.00894 0.72823 0.73583 0.72264 1.93510 1.40629 1.86820 1.77833 1.93497 1.64565 1.62068 1.77561 1.55265 1.59814 1.41102 1.30272 1.18662 0.87661 0.90736 0.89522 1.21630 1.30251 1.03397 1.03588 0.90711 1.25903 0.95291 0.96120 1.02007 1.70056 1.32965 1.17018 1.36364 0.85327 0.77496 0.78951 0.78502 1.19587 1.20900 1.18834 1.20979 0.91585 0.99600 0.88328 1.21626 1.01903 0.91219 1.09903 0.92446 0.92623 0.92445 0.91793 0.92040 0.91198 0.90872 0.90822 0.91218 0.90642 0.90124 0.82994 0.84258 0.74650 0.97074 0.96960 0.92286 0.82307 0.81329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.13 -1.14 5.93 30.60 0.18 -0.96 16 3 C -0.11 -1.03 5.21 30.59 0.16 -0.87 16 4 C -0.12 -1.40 5.58 30.59 0.17 -1.23 16 5 C 0.04 0.65 4.74 71.98 0.34 1.00 16 6 O -0.32 -7.20 10.14 -92.34 -0.94 -8.13 16 7 C 0.18 4.71 6.69 22.51 0.15 4.86 16 8 C -0.18 -5.31 9.99 22.37 0.22 -5.09 16 9 C 0.01 0.22 9.51 22.25 0.21 0.44 16 10 C -0.72 -24.19 5.95 22.28 0.13 -24.06 16 11 S 2.71 103.08 5.73 -56.49 -0.32 102.76 16 12 O -1.00 -44.54 16.76 -128.00 -2.14 -46.68 16 13 O -0.99 -37.66 17.28 -128.00 -2.21 -39.87 16 14 N -1.10 -45.23 5.99 -190.78 -1.14 -46.37 16 15 C 0.26 13.09 5.98 85.63 0.51 13.60 16 16 C -0.55 -29.55 9.27 25.60 0.24 -29.31 16 17 H 0.07 3.78 7.65 -2.91 -0.02 3.76 16 18 C 0.01 0.37 5.46 84.65 0.46 0.83 16 19 N -0.93 -53.36 13.29 21.45 0.28 -53.08 16 20 Si 0.97 42.36 29.54 68.60 2.03 44.39 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 C 0.01 0.40 9.51 22.25 0.21 0.61 16 25 C -0.23 -5.38 9.04 22.37 0.20 -5.18 16 26 H 0.06 0.44 8.14 -2.38 -0.02 0.42 16 27 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.08 0.99 7.66 -2.39 -0.02 0.97 16 36 H 0.08 0.96 7.66 -2.39 -0.02 0.94 16 37 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.14 4.81 7.62 -2.91 -0.02 4.79 16 39 H 0.42 15.36 8.54 -96.75 -0.83 14.54 16 40 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.01 0.69 7.75 -2.38 -0.02 0.67 16 42 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 43 H 0.16 3.75 7.61 -2.91 -0.02 3.73 16 44 H 0.17 2.68 6.30 -2.91 -0.02 2.66 16 Total: -1.00 -69.39 381.40 -0.37 -69.76 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.17 Total: 23.14 kcal Atomic # 6 Polarization: -49.83 SS G_CDS: 3.91 Total: -45.92 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -0.86 Total: -99.44 kcal Atomic # 8 Polarization: -89.39 SS G_CDS: -5.29 Total: -94.68 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: 103.08 SS G_CDS: -0.32 Total: 102.76 kcal Total: -69.39 -0.37 -69.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487338662.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.346 kcal (2) G-P(sol) polarization free energy of solvation -69.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds