Wall clock time and date at job start Tue Mar 31 2020 15:29:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09001 * 109.67922 * 174.81742 * 3 2 1 5 5 C 1.53301 * 109.68413 * 54.26919 * 3 2 1 6 6 O 1.42965 * 109.21792 * 292.57740 * 5 3 2 7 7 C 1.42964 * 114.16469 * 297.41693 * 6 5 3 8 8 C 1.52874 * 109.29806 * 62.45459 * 7 6 5 9 9 N 1.47146 * 109.68602 * 295.33921 * 3 2 1 10 10 C 1.34783 * 120.98296 * 249.17060 * 9 3 2 11 11 O 1.21717 * 119.99908 * 4.95996 * 10 9 3 12 12 C 1.46254 * 119.99768 * 184.68273 * 10 9 3 13 13 C 1.35026 * 119.99548 * 173.31032 * 12 10 9 14 14 C 1.46955 * 120.00316 * 349.59777 * 13 12 10 15 15 C 1.40026 * 120.09918 * 312.87757 * 14 13 12 16 16 C 1.37604 * 119.89645 * 179.76428 * 15 14 13 17 17 C 1.39171 * 120.09912 * 0.51244 * 16 15 14 18 18 O 1.35571 * 119.89866 * 179.75874 * 17 16 15 19 19 C 1.34782 * 117.00279 * 186.01169 * 18 17 16 20 20 H 1.07998 * 119.99751 * 5.54607 * 19 18 17 21 21 C 1.38722 * 120.00046 * 185.55149 * 19 18 17 22 22 N 1.31509 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47561 * 119.99682 * 23 21 19 26 26 H 1.48500 * 109.47050 * 239.99596 * 23 21 19 27 27 C 1.39175 * 120.20436 * 359.74118 * 17 16 15 28 28 C 1.37593 * 120.10379 * 0.02562 * 27 17 16 29 29 H 4.19070 * 14.98845 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.51137 * 52.49733 * 5 3 2 31 31 H 1.08995 * 109.50992 * 172.65567 * 5 3 2 32 32 H 1.09008 * 109.50833 * 182.50619 * 7 6 5 33 33 H 1.08996 * 109.51359 * 302.60750 * 7 6 5 34 34 H 1.09002 * 109.62063 * 188.11492 * 8 7 6 35 35 H 1.09003 * 109.53071 * 67.69331 * 8 7 6 36 36 H 1.08002 * 120.00370 * 353.31774 * 12 10 9 37 37 H 1.07999 * 119.99432 * 169.59522 * 13 12 10 38 38 H 1.08004 * 120.05492 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.94556 * 180.22896 * 16 15 14 40 40 H 0.96994 * 120.00206 * 180.02562 * 22 21 19 41 41 H 1.08007 * 119.94911 * 179.97438 * 27 17 16 42 42 H 1.08001 * 120.05424 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0126 1.0230 -0.0927 5 6 3.1627 -0.8420 -1.1717 6 8 2.8338 -2.2148 -0.9452 7 6 3.4433 -2.7782 0.2188 8 6 2.9460 -2.0358 1.4591 9 7 3.1419 -0.5921 1.2522 10 6 3.7622 0.1640 2.1797 11 8 3.8393 1.3694 2.0299 12 6 4.3371 -0.4635 3.3692 13 6 5.0743 0.2705 4.2300 14 6 5.4916 1.6314 3.8650 15 6 6.0502 1.8805 2.6053 16 6 6.4350 3.1574 2.2661 17 6 6.2796 4.1983 3.1766 18 8 6.6646 5.4538 2.8398 19 6 6.6043 6.3921 3.8055 20 1 6.3471 6.1111 4.8161 21 6 6.8726 7.7187 3.5014 22 7 7.1862 8.0608 2.2709 23 14 6.7898 9.0190 4.8399 24 1 6.4187 8.3803 6.1282 25 1 8.1152 9.6749 4.9758 26 1 5.7690 10.0357 4.4799 27 6 5.7297 3.9545 4.4316 28 6 5.3376 2.6819 4.7779 29 1 -1.0501 -0.0011 -0.0004 30 1 2.6962 -0.5038 -2.0970 31 1 4.2447 -0.7347 -1.2480 32 1 3.1787 -3.8330 0.2939 33 1 4.5263 -2.6787 0.1470 34 1 3.5117 -2.3615 2.3321 35 1 1.8867 -2.2447 1.6086 36 1 4.1722 -1.5138 3.5589 37 1 5.3571 -0.1427 5.1869 38 1 6.1750 1.0726 1.8996 39 1 6.8626 3.3510 1.2934 40 1 7.3742 8.9883 2.0583 41 1 5.6113 4.7654 5.1352 42 1 4.9114 2.4935 5.7522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491708734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:28 Heat of formation + Delta-G solvation = 22.232119 kcal Electronic energy + Delta-G solvation = -26937.106941 eV Core-core repulsion = 23044.403521 eV Total energy + Delta-G solvation = -3892.703420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.59084 -39.10382 -38.34994 -36.49836 -35.03265 -33.84009 -32.95681 -32.12126 -30.95092 -30.14410 -28.64795 -27.57511 -25.49889 -24.82752 -23.41490 -22.29315 -21.78785 -20.78631 -18.87700 -17.98754 -17.92651 -17.67166 -16.90347 -16.60117 -15.78905 -15.73587 -15.49533 -15.16979 -14.57685 -14.50027 -14.34539 -13.86205 -13.65779 -13.51731 -13.34832 -13.07701 -12.88180 -12.60783 -12.39130 -12.16560 -11.88411 -11.70625 -11.49368 -11.21325 -11.03571 -10.91693 -10.69961 -10.59733 -10.45820 -10.40332 -10.08469 -9.53649 -9.45306 -9.19272 -8.79321 -8.73326 -7.97345 -6.90986 -6.47269 -4.02967 1.18883 2.28297 2.40019 2.62115 2.72330 3.12753 3.13673 3.19211 3.22599 3.47538 3.52852 3.96030 4.14728 4.43990 4.58836 4.66172 4.70978 4.86402 4.89056 5.04215 5.11543 5.20365 5.26163 5.29903 5.31543 5.45708 5.50469 5.57837 5.70980 5.81414 5.83494 6.15542 6.23812 6.32376 6.41464 6.55421 6.75279 6.75743 7.00513 7.10597 7.30330 7.36745 7.43016 7.48301 7.49508 7.89543 7.99291 8.35404 8.98526 9.70391 10.70685 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002728 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.743889 B =10259.998609 C =10830.066465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.187 4.187 3 C 0.217 3.783 4 H 0.130 0.870 5 C 0.061 3.939 6 O -0.376 6.376 7 C 0.046 3.954 8 C 0.073 3.927 9 N -0.615 5.615 10 C 0.547 3.453 11 O -0.503 6.503 12 C -0.268 4.268 13 C 0.033 3.967 14 C -0.188 4.188 15 C 0.004 3.996 16 C -0.200 4.200 17 C 0.170 3.830 18 O -0.173 6.173 19 C -0.390 4.390 20 H 0.094 0.906 21 C 0.039 3.961 22 N -0.859 5.859 23 Si 0.942 3.058 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.276 1.276 27 C -0.247 4.247 28 C -0.042 4.042 29 H 0.217 0.783 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.100 0.900 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.114 0.886 40 H 0.270 0.730 41 H 0.126 0.874 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.809 -21.631 -1.343 23.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.188 4.188 3 C 0.113 3.887 4 H 0.147 0.853 5 C -0.016 4.016 6 O -0.294 6.294 7 C -0.032 4.032 8 C -0.050 4.050 9 N -0.351 5.351 10 C 0.340 3.660 11 O -0.378 6.378 12 C -0.289 4.289 13 C 0.013 3.987 14 C -0.189 4.189 15 C -0.014 4.014 16 C -0.219 4.219 17 C 0.115 3.885 18 O -0.075 6.075 19 C -0.466 4.466 20 H 0.111 0.889 21 C -0.166 4.166 22 N -0.493 5.493 23 Si 0.766 3.234 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.266 4.266 28 C -0.060 4.060 29 H 0.234 0.766 30 H 0.127 0.873 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.144 0.856 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.693 -20.723 -1.869 22.184 hybrid contribution -0.391 0.663 0.919 1.198 sum -8.084 -20.060 -0.950 21.649 Atomic orbital electron populations 1.24875 0.95788 1.00932 0.99000 1.23063 0.94223 1.00239 1.01267 1.18635 0.84236 1.00579 0.85216 0.85268 1.22981 1.00250 0.81387 0.97009 1.87977 1.71993 1.24851 1.44548 1.22940 0.97502 0.97895 0.84854 1.22360 1.02372 0.80732 0.99509 1.48189 1.59567 1.08480 1.18902 1.18561 0.77992 0.86784 0.82698 1.91011 1.57308 1.13378 1.76073 1.22639 1.07550 1.00161 0.98536 1.22387 0.88063 0.92518 0.95687 1.18286 1.11667 0.92511 0.96463 1.20409 0.93127 0.94945 0.92952 1.19996 1.10647 0.91317 0.99980 1.19531 0.90304 0.86206 0.92423 1.83924 1.71558 1.13539 1.38461 1.21435 1.49048 0.86458 0.89624 0.88871 1.25333 0.96430 0.97144 0.97676 1.70029 1.42477 1.18609 1.18209 0.85634 0.78315 0.79839 0.79577 1.19024 1.20084 1.20107 1.20966 1.09635 0.97453 0.98582 1.20721 0.96183 0.92171 0.96951 0.76575 0.87334 0.91324 0.87700 0.92292 0.88175 0.90980 0.85801 0.85868 0.88170 0.86787 0.91977 0.85618 0.87610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 19.25 29.55 0.57 -1.54 16 2 C -0.19 -2.40 12.34 -37.13 -0.46 -2.86 16 3 C 0.22 2.69 3.07 -70.21 -0.22 2.47 16 4 H 0.13 1.82 7.12 -51.93 -0.37 1.45 16 5 C 0.06 0.61 6.34 37.31 0.24 0.84 16 6 O -0.38 -3.85 10.54 -35.23 -0.37 -4.23 16 7 C 0.05 0.35 6.97 37.09 0.26 0.61 16 8 C 0.07 0.63 6.22 -3.75 -0.02 0.61 16 9 N -0.62 -7.54 2.69 -169.88 -0.46 -7.99 16 10 C 0.55 8.20 6.79 -13.04 -0.09 8.11 16 11 O -0.50 -9.80 11.83 5.17 0.06 -9.74 16 12 C -0.27 -3.31 9.25 -37.50 -0.35 -3.66 16 13 C 0.03 0.45 9.78 -37.19 -0.36 0.08 16 14 C -0.19 -3.42 4.41 -105.03 -0.46 -3.88 16 15 C 0.00 0.08 6.69 -39.14 -0.26 -0.18 16 16 C -0.20 -4.53 9.97 -39.47 -0.39 -4.92 16 17 C 0.17 4.31 6.66 -38.89 -0.26 4.05 16 18 O -0.17 -5.06 9.74 0.74 0.01 -5.05 16 19 C -0.39 -11.07 9.43 30.91 0.29 -10.78 16 20 H 0.09 2.46 5.28 -52.49 -0.28 2.18 16 21 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 22 N -0.86 -25.43 13.67 55.48 0.76 -24.67 16 23 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.90 7.11 56.52 0.40 -5.49 16 26 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 27 C -0.25 -5.63 9.11 -39.47 -0.36 -5.98 16 28 C -0.04 -0.81 9.78 -39.15 -0.38 -1.19 16 29 H 0.22 1.63 7.80 -54.09 -0.42 1.21 16 30 H 0.11 0.92 8.13 -51.93 -0.42 0.50 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.10 0.55 8.14 -51.92 -0.42 0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.10 0.65 5.40 -51.93 -0.28 0.37 16 35 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 36 H 0.12 1.06 5.93 -52.49 -0.31 0.75 16 37 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.10 1.75 7.32 -52.48 -0.38 1.37 16 39 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 40 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 41 H 0.13 2.85 5.70 -52.48 -0.30 2.55 16 42 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -35.13 358.57 -6.84 -41.97 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -4.86 Total: 5.86 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -2.36 Total: -17.24 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.30 Total: -32.66 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.30 Total: -19.01 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.13 -6.84 -41.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.198 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.966 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds