Wall clock time and date at job start Tue Mar 31 2020 15:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 H 1.09001 * 109.67922 * 174.81742 * 3 2 1 5 5 C 1.53301 * 109.68413 * 54.26919 * 3 2 1 6 6 O 1.42965 * 109.21792 * 292.57740 * 5 3 2 7 7 C 1.42964 * 114.16469 * 297.41693 * 6 5 3 8 8 C 1.52874 * 109.29806 * 62.45459 * 7 6 5 9 9 N 1.47146 * 109.68602 * 295.33921 * 3 2 1 10 10 C 1.34783 * 120.98296 * 249.17060 * 9 3 2 11 11 O 1.21717 * 119.99908 * 4.95996 * 10 9 3 12 12 C 1.46254 * 119.99768 * 184.68273 * 10 9 3 13 13 C 1.35026 * 119.99548 * 173.31032 * 12 10 9 14 14 C 1.46955 * 120.00316 * 349.59777 * 13 12 10 15 15 C 1.40026 * 120.09918 * 312.87757 * 14 13 12 16 16 C 1.37604 * 119.89645 * 179.76428 * 15 14 13 17 17 C 1.39171 * 120.09912 * 0.51244 * 16 15 14 18 18 O 1.35571 * 119.89866 * 179.75874 * 17 16 15 19 19 C 1.34782 * 117.00279 * 186.01169 * 18 17 16 20 20 H 1.07998 * 119.99751 * 5.54607 * 19 18 17 21 21 C 1.38722 * 120.00046 * 185.55149 * 19 18 17 22 22 N 1.31509 * 120.00117 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99917 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47266 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47561 * 119.99682 * 23 21 19 26 26 H 1.48500 * 109.47050 * 239.99596 * 23 21 19 27 27 C 1.39175 * 120.20436 * 359.74118 * 17 16 15 28 28 C 1.37593 * 120.10379 * 0.02562 * 27 17 16 29 29 H 4.19070 * 14.98845 * 359.97438 * 4 2 1 30 30 H 1.09000 * 109.51137 * 52.49733 * 5 3 2 31 31 H 1.08995 * 109.50992 * 172.65567 * 5 3 2 32 32 H 1.09008 * 109.50833 * 182.50619 * 7 6 5 33 33 H 1.08996 * 109.51359 * 302.60750 * 7 6 5 34 34 H 1.09002 * 109.62063 * 188.11492 * 8 7 6 35 35 H 1.09003 * 109.53071 * 67.69331 * 8 7 6 36 36 H 1.08002 * 120.00370 * 353.31774 * 12 10 9 37 37 H 1.07999 * 119.99432 * 169.59522 * 13 12 10 38 38 H 1.08004 * 120.05492 * 0.02562 * 15 14 13 39 39 H 1.07998 * 119.94556 * 180.22896 * 16 15 14 40 40 H 0.96994 * 120.00206 * 180.02562 * 22 21 19 41 41 H 1.08007 * 119.94911 * 179.97438 * 27 17 16 42 42 H 1.08001 * 120.05424 * 179.97438 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 1 3.0126 1.0230 -0.0927 5 6 3.1627 -0.8420 -1.1717 6 8 2.8338 -2.2148 -0.9452 7 6 3.4433 -2.7782 0.2188 8 6 2.9460 -2.0358 1.4591 9 7 3.1419 -0.5921 1.2522 10 6 3.7622 0.1640 2.1797 11 8 3.8393 1.3694 2.0299 12 6 4.3371 -0.4635 3.3692 13 6 5.0743 0.2705 4.2300 14 6 5.4916 1.6314 3.8650 15 6 6.0502 1.8805 2.6053 16 6 6.4350 3.1574 2.2661 17 6 6.2796 4.1983 3.1766 18 8 6.6646 5.4538 2.8398 19 6 6.6043 6.3921 3.8055 20 1 6.3471 6.1111 4.8161 21 6 6.8726 7.7187 3.5014 22 7 7.1862 8.0608 2.2709 23 14 6.7898 9.0190 4.8399 24 1 6.4187 8.3803 6.1282 25 1 8.1152 9.6749 4.9758 26 1 5.7690 10.0357 4.4799 27 6 5.7297 3.9545 4.4316 28 6 5.3376 2.6819 4.7779 29 1 -1.0501 -0.0011 -0.0004 30 1 2.6962 -0.5038 -2.0970 31 1 4.2447 -0.7347 -1.2480 32 1 3.1787 -3.8330 0.2939 33 1 4.5263 -2.6787 0.1470 34 1 3.5117 -2.3615 2.3321 35 1 1.8867 -2.2447 1.6086 36 1 4.1722 -1.5138 3.5589 37 1 5.3571 -0.1427 5.1869 38 1 6.1750 1.0726 1.8996 39 1 6.8626 3.3510 1.2934 40 1 7.3742 8.9883 2.0583 41 1 5.6113 4.7654 5.1352 42 1 4.9114 2.4935 5.7522 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491708734.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:27 Heat of formation + Delta-G solvation = -1.414182 kcal Electronic energy + Delta-G solvation = -26938.132322 eV Core-core repulsion = 23044.403521 eV Total energy + Delta-G solvation = -3893.728800 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.60959 -40.71036 -39.57564 -38.11417 -36.03566 -34.88128 -34.44066 -33.79500 -31.86038 -31.74761 -29.95438 -28.71808 -27.42277 -25.74992 -24.50538 -23.57891 -23.26028 -22.14765 -20.15878 -19.64303 -18.94648 -18.82647 -18.54887 -17.54258 -16.79774 -16.60511 -16.41118 -16.36904 -16.24295 -15.93324 -15.73300 -15.53178 -15.11137 -14.72707 -14.66707 -14.49743 -14.17003 -13.84594 -13.75884 -13.56416 -13.16941 -13.03301 -12.69968 -12.59624 -12.35083 -12.24915 -12.10188 -11.97183 -11.81527 -11.30608 -11.28581 -11.05510 -10.87730 -10.62307 -10.41838 -9.84293 -9.53832 -8.60031 -8.50022 -6.16803 -0.03043 0.69566 1.05509 1.32906 1.36257 1.43360 1.52183 1.79865 2.16107 2.29590 2.35288 2.82697 2.85055 3.20322 3.30640 3.49393 3.66397 3.70746 3.90028 4.05360 4.10930 4.14588 4.16957 4.23819 4.35782 4.38135 4.53619 4.53876 4.63028 4.75297 4.81657 4.87149 5.02274 5.03337 5.07897 5.19637 5.23549 5.33046 5.45756 5.65037 5.71612 5.79859 6.01212 6.05913 6.23316 6.37401 6.58393 6.94457 7.22558 7.76707 8.73890 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002728 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.743889 B =10259.998609 C =10830.066465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.230 4.230 3 C 0.211 3.789 4 H 0.099 0.901 5 C 0.069 3.931 6 O -0.389 6.389 7 C 0.042 3.958 8 C 0.069 3.931 9 N -0.609 5.609 10 C 0.533 3.467 11 O -0.562 6.562 12 C -0.234 4.234 13 C 0.015 3.985 14 C -0.159 4.159 15 C 0.007 3.993 16 C -0.218 4.218 17 C 0.126 3.874 18 O -0.232 6.232 19 C -0.414 4.414 20 H 0.102 0.898 21 C -0.024 4.024 22 N -0.921 5.921 23 Si 1.022 2.978 24 H -0.250 1.250 25 H -0.265 1.265 26 H -0.269 1.269 27 C -0.256 4.256 28 C -0.049 4.049 29 H 0.250 0.750 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.135 0.865 33 H 0.066 0.934 34 H 0.131 0.869 35 H 0.073 0.927 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.510 -26.235 0.984 27.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.231 4.231 3 C 0.107 3.893 4 H 0.117 0.883 5 C -0.009 4.009 6 O -0.307 6.307 7 C -0.035 4.035 8 C -0.053 4.053 9 N -0.343 5.343 10 C 0.326 3.674 11 O -0.441 6.441 12 C -0.254 4.254 13 C -0.004 4.004 14 C -0.159 4.159 15 C -0.011 4.011 16 C -0.237 4.237 17 C 0.075 3.925 18 O -0.138 6.138 19 C -0.490 4.490 20 H 0.119 0.881 21 C -0.222 4.222 22 N -0.559 5.559 23 Si 0.840 3.160 24 H -0.173 1.173 25 H -0.190 1.190 26 H -0.194 1.194 27 C -0.276 4.276 28 C -0.067 4.067 29 H 0.266 0.734 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.153 0.847 33 H 0.084 0.916 34 H 0.148 0.852 35 H 0.091 0.909 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.082 0.918 41 H 0.136 0.864 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.423 -25.451 0.458 27.144 hybrid contribution -0.115 1.516 0.096 1.523 sum -9.538 -23.935 0.554 25.772 Atomic orbital electron populations 1.25737 0.96675 0.99185 0.97359 1.23398 0.94916 1.01895 1.02899 1.18625 0.84551 0.99698 0.86415 0.88334 1.22918 1.00419 0.81255 0.96262 1.87964 1.72520 1.24453 1.45777 1.23192 0.97852 0.99093 0.83392 1.22683 1.03149 0.78178 1.01264 1.48275 1.57959 1.10031 1.18066 1.19245 0.77981 0.86392 0.83768 1.91012 1.59561 1.15989 1.77550 1.23082 1.04738 1.02102 0.95502 1.22647 0.89739 0.89788 0.98247 1.18883 1.07287 0.95016 0.94744 1.20664 0.92265 0.93912 0.94258 1.20196 1.11455 0.92539 0.99545 1.20019 0.92445 0.85672 0.94346 1.83886 1.75082 1.15150 1.39660 1.21906 1.49745 0.87150 0.90203 0.88063 1.26673 0.95700 0.99281 1.00515 1.70178 1.45475 1.19277 1.20942 0.84495 0.78746 0.76224 0.76489 1.17335 1.18999 1.19388 1.21096 1.09871 0.99119 0.97488 1.21159 0.95666 0.90792 0.99076 0.73397 0.86598 0.90851 0.84745 0.91568 0.85165 0.90864 0.80512 0.80851 0.86084 0.87910 0.91755 0.86365 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 19.25 74.32 1.43 -2.12 16 2 C -0.23 -5.71 12.34 31.12 0.38 -5.32 16 3 C 0.21 5.15 3.07 43.16 0.13 5.29 16 4 H 0.10 2.98 7.12 -2.39 -0.02 2.96 16 5 C 0.07 1.30 6.34 72.08 0.46 1.75 16 6 O -0.39 -7.00 10.54 -148.98 -1.57 -8.57 16 7 C 0.04 0.47 6.97 71.94 0.50 0.97 16 8 C 0.07 0.88 6.22 86.21 0.54 1.41 16 9 N -0.61 -13.41 2.69 -809.57 -2.18 -15.59 16 10 C 0.53 14.56 6.79 86.33 0.59 15.15 16 11 O -0.56 -21.75 11.83 -4.40 -0.05 -21.80 16 12 C -0.23 -4.44 9.25 23.62 0.22 -4.22 16 13 C 0.01 0.32 9.78 23.82 0.23 0.56 16 14 C -0.16 -5.39 4.41 -20.13 -0.09 -5.47 16 15 C 0.01 0.28 6.69 22.55 0.15 0.43 16 16 C -0.22 -10.53 9.97 22.34 0.22 -10.30 16 17 C 0.13 6.85 6.66 22.72 0.15 7.00 16 18 O -0.23 -14.85 9.74 -20.28 -0.20 -15.05 16 19 C -0.41 -25.28 9.43 67.94 0.64 -24.64 16 20 H 0.10 5.69 5.28 -2.91 -0.02 5.67 16 21 C -0.02 -1.43 5.49 84.86 0.47 -0.97 16 22 N -0.92 -58.51 13.67 21.62 0.30 -58.22 16 23 Si 1.02 44.29 29.55 68.60 2.03 46.31 16 24 H -0.25 -9.99 7.11 99.48 0.71 -9.28 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 27 C -0.26 -12.11 9.11 22.34 0.20 -11.91 16 28 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 29 H 0.25 3.00 7.80 -4.41 -0.03 2.96 16 30 H 0.12 1.93 8.13 -2.39 -0.02 1.91 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 34 H 0.13 0.81 5.40 -2.39 -0.01 0.80 16 35 H 0.07 0.98 8.09 -2.39 -0.02 0.96 16 36 H 0.18 1.54 5.93 -2.91 -0.02 1.53 16 37 H 0.17 2.22 8.06 -2.91 -0.02 2.19 16 38 H 0.12 4.12 7.32 -2.91 -0.02 4.10 16 39 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.27 15.80 8.31 -92.71 -0.77 15.02 16 41 H 0.12 5.62 5.70 -2.91 -0.02 5.60 16 42 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -87.22 358.57 5.82 -81.40 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: 1.05 Total: 25.52 kcal Atomic # 6 Polarization: -40.45 SS G_CDS: 6.45 Total: -34.00 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -1.88 Total: -73.81 kcal Atomic # 8 Polarization: -43.60 SS G_CDS: -1.82 Total: -45.42 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -87.22 5.82 -81.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491708734.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.989 kcal (2) G-P(sol) polarization free energy of solvation -87.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds