Wall clock time and date at job start Tue Mar 31 2020 15:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00330 * 2 1 4 4 C 1.50694 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00148 * 270.02638 * 4 3 2 6 6 C 1.38218 * 119.99797 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00022 * 359.77234 * 6 5 4 8 8 C 1.38217 * 119.99999 * 0.45657 * 7 6 5 9 9 S 1.76198 * 119.99880 * 179.79516 * 8 7 6 10 10 O 1.42103 * 106.40291 * 156.18987 * 9 8 7 11 11 O 1.42096 * 106.40316 * 23.26490 * 9 8 7 12 12 N 1.65604 * 107.21445 * 269.72403 * 9 8 7 13 13 C 1.46500 * 120.00348 * 269.99913 * 12 9 8 14 14 C 1.50698 * 109.47329 * 265.00269 * 13 12 9 15 15 H 1.08002 * 119.99453 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00124 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47320 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47302 * 119.99766 * 18 16 14 21 21 H 1.48501 * 109.47124 * 239.99963 * 18 16 14 22 22 C 1.46504 * 119.99495 * 90.00421 * 12 9 8 23 23 C 1.53006 * 109.46883 * 239.99479 * 22 12 9 24 24 C 1.52999 * 109.47050 * 120.00277 * 22 12 9 25 25 C 1.38215 * 119.99767 * 90.00022 * 4 3 2 26 26 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47068 * 299.99776 * 1 2 3 28 28 H 1.09001 * 109.46727 * 59.99371 * 1 2 3 29 29 H 1.09005 * 109.46771 * 59.99776 * 3 2 1 30 30 H 1.08997 * 109.46978 * 300.00256 * 3 2 1 31 31 H 1.07995 * 120.00348 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.99993 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99714 * 180.25411 * 7 6 5 34 34 H 1.08999 * 109.46508 * 25.00461 * 13 12 9 35 35 H 1.09000 * 109.46954 * 145.00097 * 13 12 9 36 36 H 0.97005 * 120.00163 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47378 * 359.97438 * 22 12 9 38 38 H 1.09001 * 109.46801 * 300.00349 * 23 22 12 39 39 H 1.09001 * 109.46998 * 59.99945 * 23 22 12 40 40 H 1.09000 * 109.47050 * 180.02562 * 23 22 12 41 41 H 1.09000 * 109.47160 * 179.97438 * 24 22 12 42 42 H 1.09002 * 109.46719 * 299.99449 * 24 22 12 43 43 H 1.08993 * 109.47839 * 59.99291 * 24 22 12 44 44 H 1.08003 * 120.00267 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2012 1.1314 1.1983 6 6 5.5790 1.0217 1.1988 7 6 6.2682 0.9622 0.0017 8 6 5.5801 1.0219 -1.1956 9 16 6.4589 0.9514 -2.7211 10 8 5.5373 0.4779 -3.6936 11 8 7.6947 0.3075 -2.4430 12 7 6.8283 2.5087 -3.1463 13 6 5.8967 3.2841 -3.9692 14 6 6.2958 3.1749 -5.4183 15 1 7.1575 2.5871 -5.6982 16 6 5.5609 3.8254 -6.3866 17 7 4.5113 4.5408 -6.0457 18 14 6.0551 3.6895 -8.1829 19 1 7.2614 2.8314 -8.3008 20 1 4.9416 3.0864 -8.9584 21 1 6.3550 5.0421 -8.7174 22 6 8.0869 3.1110 -2.6996 23 6 7.7872 4.3490 -1.8519 24 6 8.9190 3.5164 -3.9178 25 6 4.2019 1.1316 -1.1961 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.6626 1.1742 2.1333 32 1 6.1170 0.9792 2.1343 33 1 7.3444 0.8723 0.0021 34 1 4.8870 2.8943 -3.8400 35 1 5.9246 4.3297 -3.6624 36 1 3.9944 4.9987 -6.7270 37 1 8.6438 2.3886 -2.1029 38 1 7.2301 5.0715 -2.4483 39 1 7.1944 4.0602 -0.9840 40 1 8.7236 4.7974 -1.5199 41 1 9.8552 3.9649 -3.5855 42 1 9.1325 2.6345 -4.5218 43 1 8.3620 4.2389 -4.5142 44 1 3.6640 1.1745 -2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523566849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:12 Heat of formation + Delta-G solvation = -94.246047 kcal Electronic energy + Delta-G solvation = -26858.294064 eV Core-core repulsion = 23095.983723 eV Total energy + Delta-G solvation = -3762.310341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.47752 -37.62485 -36.93413 -36.56829 -35.15742 -32.75930 -32.19871 -31.17559 -30.61400 -27.44002 -26.96383 -26.51789 -25.44810 -23.18645 -22.78986 -21.76164 -20.30282 -18.28357 -17.45405 -17.00088 -16.52363 -16.41103 -16.22172 -15.83742 -15.34588 -15.17632 -14.77501 -14.30440 -13.98494 -13.68699 -13.59987 -13.12387 -12.91241 -12.78163 -12.44104 -12.30781 -12.15881 -12.03433 -11.72675 -11.63977 -11.48125 -11.39002 -11.17220 -11.12062 -11.02662 -10.90616 -10.77365 -10.50258 -10.43127 -10.23083 -9.85127 -9.83088 -9.56001 -9.27780 -8.94058 -8.41911 -8.05155 -6.04614 -4.06409 0.79693 1.11140 1.25308 3.25562 3.32115 3.40408 3.45481 3.73168 3.97502 4.37211 4.47236 4.59965 4.70455 4.95324 5.01114 5.04564 5.12427 5.21312 5.27354 5.29694 5.31890 5.35910 5.50334 5.52080 5.66209 5.72614 5.77297 5.91531 5.99823 6.16769 6.19844 6.22088 6.28614 6.37475 6.50441 6.56057 6.79271 6.83150 6.96785 7.15628 7.28425 7.43125 7.65479 7.93741 8.23115 8.95658 9.57526 11.04170 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.004661 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.760367 B = 6006.208963 C = 7316.107188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.102 3.898 4 C -0.116 4.116 5 C -0.052 4.052 6 C -0.147 4.147 7 C -0.017 4.017 8 C -0.674 4.674 9 S 2.682 3.318 10 O -0.941 6.941 11 O -0.976 6.976 12 N -0.977 5.977 13 C 0.255 3.745 14 C -0.519 4.519 15 H 0.064 0.936 16 C 0.062 3.938 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.271 1.271 20 H -0.283 1.283 21 H -0.285 1.285 22 C 0.149 3.851 23 C -0.161 4.161 24 C -0.153 4.153 25 C 0.007 3.993 26 H 0.086 0.914 27 H 0.040 0.960 28 H 0.045 0.955 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.138 0.862 34 H 0.037 0.963 35 H 0.040 0.960 36 H 0.262 0.738 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.049 0.951 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.084 0.916 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.649 -2.706 15.831 16.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.026 3.974 4 C -0.117 4.117 5 C -0.070 4.070 6 C -0.166 4.166 7 C -0.036 4.036 8 C -0.757 4.757 9 S 2.770 3.230 10 O -0.931 6.931 11 O -0.966 6.966 12 N -0.817 5.817 13 C 0.133 3.867 14 C -0.559 4.559 15 H 0.082 0.918 16 C -0.140 4.140 17 N -0.537 5.537 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.209 1.209 21 H -0.211 1.211 22 C 0.042 3.958 23 C -0.220 4.220 24 C -0.212 4.212 25 C -0.013 4.013 26 H 0.104 0.896 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.145 0.855 32 H 0.148 0.852 33 H 0.156 0.844 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.103 0.897 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.510 -3.511 15.317 15.786 hybrid contribution -0.494 0.583 -0.342 0.837 sum -2.005 -2.929 14.975 15.390 Atomic orbital electron populations 1.22768 0.80910 1.02856 1.00112 1.87974 1.19699 1.27411 1.95437 1.21359 0.89421 0.85201 1.01434 1.19660 0.94345 1.04079 0.93600 1.21258 0.94426 0.93938 0.97423 1.21215 0.94310 1.02876 0.98220 1.20959 1.00154 0.91299 0.91179 1.31561 1.06452 1.16071 1.21657 1.02326 0.73566 0.73641 0.73429 1.93604 1.64599 1.78579 1.56317 1.93496 1.43237 1.73779 1.86108 1.57554 1.27819 1.32809 1.63493 1.19085 0.86787 0.91822 0.88989 1.21559 1.12869 1.30236 0.91229 0.91752 1.24905 0.94817 0.95237 0.99054 1.69928 1.17691 1.32371 1.33675 0.86513 0.78740 0.77649 0.84991 1.19594 1.20930 1.21099 1.20678 0.84420 0.94965 0.95694 1.22174 1.01353 0.98882 0.99624 1.22132 0.98230 1.02822 0.98022 1.20913 0.92198 0.89348 0.98802 0.89557 0.94148 0.93678 0.92271 0.91611 0.85549 0.85172 0.84423 0.94560 0.94183 0.92863 0.90077 0.91171 0.93193 0.92399 0.93458 0.92665 0.89699 0.83925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -5.06 10.69 -35.23 -0.38 -5.44 16 3 C 0.10 1.23 6.06 36.00 0.22 1.45 16 4 C -0.12 -1.63 5.51 -104.63 -0.58 -2.21 16 5 C -0.05 -0.63 9.70 -39.58 -0.38 -1.01 16 6 C -0.15 -1.76 10.05 -39.58 -0.40 -2.16 16 7 C -0.02 -0.24 9.52 -39.58 -0.38 -0.62 16 8 C -0.67 -11.45 5.97 -39.58 -0.24 -11.68 16 9 S 2.68 54.18 5.64 -107.50 -0.61 53.58 16 10 O -0.94 -22.47 16.26 -57.17 -0.93 -23.40 16 11 O -0.98 -20.17 15.84 -57.17 -0.91 -21.07 16 12 N -0.98 -19.82 2.73 -108.57 -0.30 -20.11 16 13 C 0.25 6.10 4.67 -5.19 -0.02 6.08 16 14 C -0.52 -13.91 7.53 -34.44 -0.26 -14.17 16 15 H 0.06 1.73 7.07 -52.49 -0.37 1.36 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 17 N -0.90 -25.46 13.29 55.43 0.74 -24.72 16 18 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C 0.15 2.57 3.24 -67.93 -0.22 2.35 16 23 C -0.16 -2.39 9.16 37.16 0.34 -2.05 16 24 C -0.15 -2.69 8.20 37.16 0.30 -2.39 16 25 C 0.01 0.11 9.18 -39.58 -0.36 -0.25 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.56 8.09 -51.93 -0.42 0.14 16 30 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 33 H 0.14 1.76 7.61 -52.49 -0.40 1.36 16 34 H 0.04 0.93 7.61 -51.93 -0.40 0.53 16 35 H 0.04 0.97 6.45 -51.93 -0.33 0.63 16 36 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 37 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 38 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 43 H 0.08 1.67 6.65 -51.93 -0.35 1.33 16 44 H 0.14 2.47 7.62 -52.48 -0.40 2.07 16 LS Contribution 374.55 15.07 5.64 5.64 Total: -1.00 -32.95 374.55 -9.43 -42.38 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -6.72 Total: 0.37 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.96 Total: -23.66 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 0.44 Total: -44.84 kcal Atomic # 8 Polarization: -47.70 SS G_CDS: -2.21 Total: -49.91 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 54.18 SS G_CDS: -0.61 Total: 53.58 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.95 -9.43 -42.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523566849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.861 kcal (2) G-P(sol) polarization free energy of solvation -32.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds