Wall clock time and date at job start Tue Mar 31 2020 15:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00330 * 2 1 4 4 C 1.50694 * 109.47302 * 179.97438 * 3 2 1 5 5 C 1.38259 * 120.00148 * 270.02638 * 4 3 2 6 6 C 1.38218 * 119.99797 * 179.97438 * 5 4 3 7 7 C 1.38258 * 120.00022 * 359.77234 * 6 5 4 8 8 C 1.38217 * 119.99999 * 0.45657 * 7 6 5 9 9 S 1.76198 * 119.99880 * 179.79516 * 8 7 6 10 10 O 1.42103 * 106.40291 * 156.18987 * 9 8 7 11 11 O 1.42096 * 106.40316 * 23.26490 * 9 8 7 12 12 N 1.65604 * 107.21445 * 269.72403 * 9 8 7 13 13 C 1.46500 * 120.00348 * 269.99913 * 12 9 8 14 14 C 1.50698 * 109.47329 * 265.00269 * 13 12 9 15 15 H 1.08002 * 119.99453 * 359.97438 * 14 13 12 16 16 C 1.37870 * 120.00124 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99968 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00106 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47320 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.47302 * 119.99766 * 18 16 14 21 21 H 1.48501 * 109.47124 * 239.99963 * 18 16 14 22 22 C 1.46504 * 119.99495 * 90.00421 * 12 9 8 23 23 C 1.53006 * 109.46883 * 239.99479 * 22 12 9 24 24 C 1.52999 * 109.47050 * 120.00277 * 22 12 9 25 25 C 1.38215 * 119.99767 * 90.00022 * 4 3 2 26 26 H 1.08997 * 109.47305 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47068 * 299.99776 * 1 2 3 28 28 H 1.09001 * 109.46727 * 59.99371 * 1 2 3 29 29 H 1.09005 * 109.46771 * 59.99776 * 3 2 1 30 30 H 1.08997 * 109.46978 * 300.00256 * 3 2 1 31 31 H 1.07995 * 120.00348 * 359.97438 * 5 4 3 32 32 H 1.08000 * 119.99993 * 179.97438 * 6 5 4 33 33 H 1.08002 * 119.99714 * 180.25411 * 7 6 5 34 34 H 1.08999 * 109.46508 * 25.00461 * 13 12 9 35 35 H 1.09000 * 109.46954 * 145.00097 * 13 12 9 36 36 H 0.97005 * 120.00163 * 179.97438 * 17 16 14 37 37 H 1.08993 * 109.47378 * 359.97438 * 22 12 9 38 38 H 1.09001 * 109.46801 * 300.00349 * 23 22 12 39 39 H 1.09001 * 109.46998 * 59.99945 * 23 22 12 40 40 H 1.09000 * 109.47050 * 180.02562 * 23 22 12 41 41 H 1.09000 * 109.47160 * 179.97438 * 24 22 12 42 42 H 1.09002 * 109.46719 * 299.99449 * 24 22 12 43 43 H 1.08993 * 109.47839 * 59.99291 * 24 22 12 44 44 H 1.08003 * 120.00267 * 0.02562 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2012 1.1314 1.1983 6 6 5.5790 1.0217 1.1988 7 6 6.2682 0.9622 0.0017 8 6 5.5801 1.0219 -1.1956 9 16 6.4589 0.9514 -2.7211 10 8 5.5373 0.4779 -3.6936 11 8 7.6947 0.3075 -2.4430 12 7 6.8283 2.5087 -3.1463 13 6 5.8967 3.2841 -3.9692 14 6 6.2958 3.1749 -5.4183 15 1 7.1575 2.5871 -5.6982 16 6 5.5609 3.8254 -6.3866 17 7 4.5113 4.5408 -6.0457 18 14 6.0551 3.6895 -8.1829 19 1 7.2614 2.8314 -8.3008 20 1 4.9416 3.0864 -8.9584 21 1 6.3550 5.0421 -8.7174 22 6 8.0869 3.1110 -2.6996 23 6 7.7872 4.3490 -1.8519 24 6 8.9190 3.5164 -3.9178 25 6 4.2019 1.1316 -1.1961 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8463 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.6626 1.1742 2.1333 32 1 6.1170 0.9792 2.1343 33 1 7.3444 0.8723 0.0021 34 1 4.8870 2.8943 -3.8400 35 1 5.9246 4.3297 -3.6624 36 1 3.9944 4.9987 -6.7270 37 1 8.6438 2.3886 -2.1029 38 1 7.2301 5.0715 -2.4483 39 1 7.1944 4.0602 -0.9840 40 1 8.7236 4.7974 -1.5199 41 1 9.8552 3.9649 -3.5855 42 1 9.1325 2.6345 -4.5218 43 1 8.3620 4.2389 -4.5142 44 1 3.6640 1.1745 -2.1316 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000523566849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:12 Heat of formation + Delta-G solvation = -116.605128 kcal Electronic energy + Delta-G solvation = -26859.263626 eV Core-core repulsion = 23095.983723 eV Total energy + Delta-G solvation = -3763.279903 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.52558 -38.56865 -38.48041 -38.24818 -36.86233 -34.78045 -33.23400 -32.31180 -32.19913 -28.87286 -28.28630 -27.87145 -26.33209 -24.77721 -24.31291 -22.83618 -21.76421 -19.75628 -18.93467 -18.62287 -18.30509 -17.39203 -17.33043 -17.01462 -16.81529 -16.35977 -16.21421 -15.75794 -15.30401 -15.00043 -14.94723 -14.72746 -14.07764 -14.05608 -13.79211 -13.71956 -13.47517 -13.30394 -13.19611 -13.09358 -12.99669 -12.94100 -12.73194 -12.61407 -12.44973 -12.38569 -12.15380 -12.13250 -12.07840 -11.72278 -11.51730 -11.34456 -10.70837 -10.54658 -10.40031 -10.01867 -9.74922 -8.15809 -6.23647 -0.58279 -0.19994 0.16556 1.38339 1.41667 1.52462 2.02651 2.40247 2.44342 2.82836 3.04537 3.15863 3.33378 3.74282 3.80146 3.92262 3.96711 4.14511 4.22067 4.32525 4.34310 4.38295 4.46323 4.53383 4.54824 4.57719 4.74047 4.84076 4.86488 4.93273 4.95402 5.05777 5.12355 5.14837 5.20628 5.25580 5.33950 5.39956 5.59567 5.69807 5.80506 5.82381 6.02134 6.14115 6.17274 6.83216 7.42822 8.92414 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.004661 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.760367 B = 6006.208963 C = 7316.107188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.413 6.413 3 C 0.100 3.900 4 C -0.123 4.123 5 C -0.041 4.041 6 C -0.133 4.133 7 C -0.026 4.026 8 C -0.681 4.681 9 S 2.684 3.316 10 O -0.993 6.993 11 O -0.986 6.986 12 N -0.982 5.982 13 C 0.273 3.727 14 C -0.529 4.529 15 H 0.055 0.945 16 C 0.013 3.987 17 N -0.926 5.926 18 Si 0.949 3.051 19 H -0.270 1.270 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.137 3.863 23 C -0.153 4.153 24 C -0.152 4.152 25 C -0.023 4.023 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.043 0.957 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.153 0.847 34 H 0.011 0.989 35 H 0.036 0.964 36 H 0.265 0.735 37 H 0.101 0.899 38 H 0.047 0.953 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.994 -2.392 19.085 19.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.333 6.333 3 C 0.024 3.976 4 C -0.124 4.124 5 C -0.059 4.059 6 C -0.151 4.151 7 C -0.045 4.045 8 C -0.771 4.771 9 S 2.779 3.221 10 O -0.984 6.984 11 O -0.977 6.977 12 N -0.821 5.821 13 C 0.150 3.850 14 C -0.568 4.568 15 H 0.074 0.926 16 C -0.186 4.186 17 N -0.567 5.567 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.210 1.210 21 H -0.197 1.197 22 C 0.032 3.968 23 C -0.212 4.212 24 C -0.211 4.211 25 C -0.043 4.043 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.074 0.926 31 H 0.186 0.814 32 H 0.193 0.807 33 H 0.171 0.829 34 H 0.029 0.971 35 H 0.054 0.946 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.076 0.924 44 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.809 -3.195 18.523 18.814 hybrid contribution -0.730 0.434 -1.195 1.466 sum -1.538 -2.761 17.329 17.614 Atomic orbital electron populations 1.22973 0.79105 1.03965 1.01181 1.87921 1.21768 1.27996 1.95665 1.21445 0.88325 0.85206 1.02625 1.19956 0.95587 1.03459 0.93364 1.21781 0.94785 0.91312 0.97980 1.21722 0.94441 1.00177 0.98799 1.21280 1.01089 0.91141 0.90995 1.30833 1.06291 1.19471 1.20457 1.01725 0.73055 0.73258 0.74047 1.93531 1.65746 1.79662 1.59455 1.93463 1.43746 1.73959 1.86488 1.57413 1.28561 1.32252 1.63856 1.18602 0.86319 0.91696 0.88395 1.21838 1.12429 1.29645 0.92935 0.92633 1.25640 0.94935 0.95162 1.02863 1.70015 1.18578 1.33223 1.34874 0.85646 0.78259 0.78138 0.80525 1.19435 1.20976 1.19665 1.21042 0.83156 0.96523 0.96092 1.22106 1.02947 0.97057 0.99075 1.22107 0.99734 1.01447 0.97787 1.20861 0.92370 0.91798 0.99263 0.88531 0.91856 0.93800 0.88878 0.92611 0.81394 0.80669 0.82913 0.97149 0.94587 0.92642 0.88159 0.93381 0.92034 0.89054 0.89662 0.94531 0.92410 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -10.41 10.69 -148.98 -1.59 -12.00 16 3 C 0.10 2.28 6.06 71.23 0.43 2.72 16 4 C -0.12 -3.29 5.51 -19.87 -0.11 -3.40 16 5 C -0.04 -0.81 9.70 22.27 0.22 -0.59 16 6 C -0.13 -2.57 10.05 22.27 0.22 -2.35 16 7 C -0.03 -0.68 9.52 22.27 0.21 -0.47 16 8 C -0.68 -23.39 5.97 22.27 0.13 -23.26 16 9 S 2.68 113.26 5.64 -56.49 -0.32 112.94 16 10 O -0.99 -51.09 16.26 -128.00 -2.08 -53.17 16 11 O -0.99 -41.38 15.84 -128.00 -2.03 -43.41 16 12 N -0.98 -41.30 2.73 -497.41 -1.36 -42.65 16 13 C 0.27 13.82 4.67 85.63 0.40 14.22 16 14 C -0.53 -29.61 7.53 25.60 0.19 -29.42 16 15 H 0.06 3.13 7.07 -2.91 -0.02 3.11 16 16 C 0.01 0.73 5.46 84.65 0.46 1.19 16 17 N -0.93 -54.32 13.29 21.44 0.28 -54.04 16 18 Si 0.95 45.06 29.54 68.60 2.03 47.08 16 19 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 22 C 0.14 4.67 3.24 44.99 0.15 4.82 16 23 C -0.15 -4.30 9.16 71.98 0.66 -3.64 16 24 C -0.15 -5.33 8.20 71.98 0.59 -4.74 16 25 C -0.02 -0.80 9.18 22.27 0.20 -0.60 16 26 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.47 8.09 -2.38 -0.02 1.45 16 30 H 0.06 1.35 8.09 -2.39 -0.02 1.33 16 31 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 32 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.15 3.48 7.61 -2.91 -0.02 3.46 16 34 H 0.01 0.58 7.61 -2.39 -0.02 0.56 16 35 H 0.04 1.84 6.45 -2.39 -0.02 1.82 16 36 H 0.26 14.64 8.31 -92.70 -0.77 13.87 16 37 H 0.10 3.03 6.91 -2.39 -0.02 3.02 16 38 H 0.05 1.56 6.69 -2.39 -0.02 1.55 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 41 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 42 H 0.04 1.38 7.93 -2.39 -0.02 1.36 16 43 H 0.06 2.33 6.65 -2.39 -0.02 2.31 16 44 H 0.12 4.47 7.62 -2.91 -0.02 4.45 16 Total: -1.00 -75.51 374.55 0.93 -74.58 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.98 Total: 14.54 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 5.01 Total: -43.87 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -1.07 Total: -96.69 kcal Atomic # 8 Polarization: -102.88 SS G_CDS: -5.70 Total: -108.58 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 113.26 SS G_CDS: -0.32 Total: 112.94 kcal Total: -75.51 0.93 -74.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523566849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.024 kcal (2) G-P(sol) polarization free energy of solvation -75.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds