Wall clock time and date at job start Tue Mar 31 2020 15:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00325 * 2 1 4 4 C 1.50701 * 109.47609 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99447 * 354.58560 * 4 3 2 6 6 C 1.38218 * 119.99608 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99878 * 0.02562 * 6 5 4 8 8 C 1.38209 * 119.99881 * 359.70385 * 7 6 5 9 9 C 1.38207 * 120.00277 * 174.55928 * 4 3 2 10 10 S 1.76197 * 119.99819 * 0.02562 * 9 4 3 11 11 O 1.42102 * 106.40332 * 52.03917 * 10 9 4 12 12 O 1.42096 * 106.40613 * 279.11713 * 10 9 4 13 13 N 1.65603 * 107.21777 * 165.57899 * 10 9 4 14 14 C 1.46500 * 120.00407 * 94.22279 * 13 10 9 15 15 C 1.50709 * 109.46796 * 94.14173 * 14 13 10 16 16 H 1.07999 * 119.99642 * 0.02562 * 15 14 13 17 17 C 1.37868 * 119.99695 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00197 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47423 * 89.99910 * 19 17 15 21 21 H 1.48504 * 109.46897 * 209.99754 * 19 17 15 22 22 H 1.48498 * 109.46813 * 329.99503 * 19 17 15 23 23 C 1.46507 * 119.99632 * 274.22343 * 13 10 9 24 24 C 1.53008 * 109.46837 * 120.00115 * 23 13 10 25 25 C 1.53001 * 109.47227 * 239.99739 * 23 13 10 26 26 H 1.09000 * 109.46862 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47119 * 300.00028 * 1 2 3 29 29 H 1.09007 * 109.46885 * 59.99687 * 3 2 1 30 30 H 1.08991 * 109.47461 * 300.00349 * 3 2 1 31 31 H 1.07993 * 120.00290 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99838 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.99557 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99897 * 180.29577 * 8 7 6 35 35 H 1.08994 * 109.47119 * 214.14088 * 14 13 10 36 36 H 1.09000 * 109.46970 * 334.14766 * 14 13 10 37 37 H 0.96996 * 120.00362 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47418 * 0.02562 * 23 13 10 39 39 H 1.09001 * 109.47020 * 59.99875 * 24 23 13 40 40 H 1.09000 * 109.47038 * 180.02562 * 24 23 13 41 41 H 1.09004 * 109.46784 * 299.99866 * 24 23 13 42 42 H 1.08997 * 109.46642 * 60.00077 * 25 23 13 43 43 H 1.09000 * 109.47064 * 180.02562 * 25 23 13 44 44 H 1.09000 * 109.46802 * 300.00556 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1075 -0.0565 0.1141 6 6 5.4853 -0.1656 0.1141 7 6 6.2686 0.9681 0.0013 8 6 5.6738 2.2099 -0.1178 9 6 4.2956 2.3197 -0.1127 10 16 3.5374 3.9035 -0.2573 11 8 2.6158 4.0071 0.8194 12 8 3.1597 4.0448 -1.6199 13 7 4.7122 5.0368 0.0221 14 6 5.4446 5.6252 -1.1020 15 6 4.7799 6.9131 -1.5154 16 1 3.9003 7.2588 -0.9928 17 6 5.2949 7.6499 -2.5607 18 7 4.7147 8.7736 -2.9219 19 14 6.8159 7.0516 -3.4651 20 1 6.4081 6.1872 -4.6017 21 1 7.5773 8.2184 -3.9790 22 1 7.6715 6.2735 -2.5336 23 6 5.0191 5.4508 1.3935 24 6 6.4848 5.1402 1.7040 25 6 4.7744 6.9541 1.5393 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.4956 -0.9419 0.2027 32 1 5.9501 -1.1365 0.2032 33 1 7.3453 0.8827 0.0017 34 1 6.2856 3.0950 -0.2107 35 1 6.4722 5.8273 -0.8002 36 1 5.4423 4.9296 -1.9411 37 1 5.0771 9.2921 -3.6571 38 1 4.3780 4.9088 2.0888 39 1 7.1262 5.6819 1.0088 40 1 6.7131 5.4478 2.7245 41 1 6.6591 4.0693 1.6001 42 1 3.7303 7.1752 1.3180 43 1 5.0032 7.2621 2.5595 44 1 5.4158 7.4956 0.8440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537600862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:16 Heat of formation + Delta-G solvation = -85.033249 kcal Electronic energy + Delta-G solvation = -27431.021584 eV Core-core repulsion = 23669.110740 eV Total energy + Delta-G solvation = -3761.910844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.57570 -37.72896 -37.12227 -36.66699 -35.33896 -32.70967 -32.31036 -31.28542 -30.87260 -27.58330 -27.40149 -26.68282 -25.60145 -23.16300 -22.46677 -21.72245 -20.39117 -18.51443 -17.57366 -17.23138 -16.76909 -16.54198 -16.12815 -16.01443 -15.52145 -14.80689 -14.77208 -14.43380 -14.31927 -13.83136 -13.65421 -13.43338 -13.01801 -12.88101 -12.70835 -12.35362 -12.23189 -12.09086 -12.01062 -11.67300 -11.63105 -11.44602 -11.35185 -11.29495 -11.13755 -10.97735 -10.87038 -10.51970 -10.36587 -10.21861 -10.05192 -10.03089 -9.44356 -9.31126 -8.83270 -8.58452 -8.21477 -6.08026 -4.06435 0.79397 0.89259 1.24887 3.25721 3.30245 3.33523 3.38465 3.44370 3.49274 4.14829 4.38128 4.51877 4.81466 4.85376 5.05916 5.06291 5.11871 5.16665 5.22839 5.26661 5.29815 5.34919 5.42349 5.49772 5.53839 5.61588 5.67589 5.80739 5.89860 6.07415 6.11273 6.15501 6.18342 6.29866 6.35436 6.45536 6.65967 6.76672 6.79414 6.90357 7.01326 7.19670 7.37331 7.56631 8.48542 8.97490 9.50895 11.05033 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004719 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.389572 B = 5931.906883 C = 6161.617213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.383 6.383 3 C 0.063 3.937 4 C 0.007 3.993 5 C -0.118 4.118 6 C -0.076 4.076 7 C -0.140 4.140 8 C -0.029 4.029 9 C -0.666 4.666 10 S 2.680 3.320 11 O -0.969 6.969 12 O -0.937 6.937 13 N -0.972 5.972 14 C 0.220 3.780 15 C -0.526 4.526 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.894 5.894 19 Si 0.866 3.134 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.265 1.265 23 C 0.148 3.852 24 C -0.167 4.167 25 C -0.152 4.152 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.139 0.861 32 H 0.128 0.872 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.040 0.960 36 H 0.032 0.968 37 H 0.264 0.736 38 H 0.084 0.916 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.047 0.953 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.144 -16.464 9.286 18.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.302 6.302 3 C -0.013 4.013 4 C 0.006 3.994 5 C -0.137 4.137 6 C -0.094 4.094 7 C -0.159 4.159 8 C -0.047 4.047 9 C -0.749 4.749 10 S 2.769 3.231 11 O -0.960 6.960 12 O -0.927 6.927 13 N -0.812 5.812 14 C 0.097 3.903 15 C -0.565 4.565 16 H 0.101 0.899 17 C -0.128 4.128 18 N -0.532 5.532 19 Si 0.693 3.307 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.189 1.189 23 C 0.042 3.958 24 C -0.226 4.226 25 C -0.211 4.211 26 H 0.065 0.935 27 H 0.108 0.892 28 H 0.065 0.935 29 H 0.114 0.886 30 H 0.090 0.910 31 H 0.157 0.843 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.074 0.926 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 0.412 -16.356 8.948 18.649 hybrid contribution 1.212 -0.509 -0.600 1.445 sum 1.624 -16.866 8.348 18.889 Atomic orbital electron populations 1.22831 0.80257 1.02980 1.00829 1.87784 1.20304 1.26428 1.95677 1.21840 0.90014 0.86359 1.03099 1.19143 0.93376 0.92913 0.93984 1.21067 0.94730 0.97413 1.00442 1.21410 0.93837 0.98688 0.95490 1.21282 1.00228 0.92626 1.01743 1.20973 0.92256 0.98948 0.92572 1.31155 1.04876 1.22561 1.16336 1.02502 0.73728 0.72839 0.74064 1.93522 1.59474 1.86492 1.56473 1.93639 1.80281 1.85143 1.33663 1.57263 1.57763 1.53045 1.13094 1.19561 0.92987 0.94969 0.82800 1.21364 1.14245 1.04284 1.16624 0.89922 1.24832 0.96852 0.94750 0.96351 1.69882 1.40347 1.14403 1.28586 0.87015 0.83746 0.78855 0.81099 1.19817 1.21026 1.18933 1.20752 0.95908 0.97551 0.81584 1.22268 0.97184 1.01259 1.01846 1.22110 1.03624 0.94599 1.00744 0.93486 0.89237 0.93451 0.88627 0.91005 0.84322 0.85390 0.85221 0.84136 0.94231 0.95020 0.92553 0.89790 0.91251 0.91876 0.92996 0.92304 0.93364 0.89627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -5.07 9.20 -35.23 -0.32 -5.39 16 3 C 0.06 0.96 4.95 36.01 0.18 1.14 16 4 C 0.01 0.12 5.87 -104.62 -0.61 -0.50 16 5 C -0.12 -1.56 9.38 -39.58 -0.37 -1.94 16 6 C -0.08 -0.87 10.05 -39.58 -0.40 -1.27 16 7 C -0.14 -1.68 10.05 -39.58 -0.40 -2.08 16 8 C -0.03 -0.42 9.14 -39.59 -0.36 -0.78 16 9 C -0.67 -11.15 5.83 -39.59 -0.23 -11.38 16 10 S 2.68 53.27 4.64 -107.50 -0.50 52.77 16 11 O -0.97 -19.53 14.96 -57.17 -0.86 -20.39 16 12 O -0.94 -22.17 16.86 -57.17 -0.96 -23.13 16 13 N -0.97 -18.97 1.77 -108.56 -0.19 -19.16 16 14 C 0.22 4.90 3.42 -5.19 -0.02 4.88 16 15 C -0.53 -14.19 8.13 -34.44 -0.28 -14.47 16 16 H 0.08 2.44 7.41 -52.49 -0.39 2.05 16 17 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 18 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 19 Si 0.87 20.50 27.47 -169.99 -4.67 15.83 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.26 -5.72 6.54 56.52 0.37 -5.35 16 23 C 0.15 2.45 3.22 -67.92 -0.22 2.23 16 24 C -0.17 -2.23 9.05 37.16 0.34 -1.89 16 25 C -0.15 -2.66 8.24 37.16 0.31 -2.35 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 1.43 7.01 -51.93 -0.36 1.07 16 30 H 0.07 1.12 7.90 -51.93 -0.41 0.71 16 31 H 0.14 1.63 7.02 -52.49 -0.37 1.26 16 32 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 34 H 0.14 1.92 5.98 -52.49 -0.31 1.61 16 35 H 0.04 0.82 5.50 -51.93 -0.29 0.53 16 36 H 0.03 0.72 6.95 -51.93 -0.36 0.36 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 1.30 7.03 -51.93 -0.37 0.93 16 39 H 0.07 0.98 6.69 -51.93 -0.35 0.63 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.62 6.70 -51.93 -0.35 0.27 16 42 H 0.06 1.13 7.96 -51.93 -0.41 0.71 16 43 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.68 6.70 -51.93 -0.35 1.33 16 LS Contribution 361.43 15.07 5.45 5.45 Total: -1.00 -33.27 361.43 -8.78 -42.05 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -6.44 Total: 2.95 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: -1.05 Total: -25.03 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.58 Total: -45.10 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.14 Total: -48.91 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.67 Total: 15.83 kcal Atomic # 16 Polarization: 53.27 SS G_CDS: -0.50 Total: 52.77 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.27 -8.78 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537600862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.985 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds