Wall clock time and date at job start Tue Mar 31 2020 15:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00325 * 2 1 4 4 C 1.50701 * 109.47609 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99447 * 354.58560 * 4 3 2 6 6 C 1.38218 * 119.99608 * 179.97438 * 5 4 3 7 7 C 1.38262 * 119.99878 * 0.02562 * 6 5 4 8 8 C 1.38209 * 119.99881 * 359.70385 * 7 6 5 9 9 C 1.38207 * 120.00277 * 174.55928 * 4 3 2 10 10 S 1.76197 * 119.99819 * 0.02562 * 9 4 3 11 11 O 1.42102 * 106.40332 * 52.03917 * 10 9 4 12 12 O 1.42096 * 106.40613 * 279.11713 * 10 9 4 13 13 N 1.65603 * 107.21777 * 165.57899 * 10 9 4 14 14 C 1.46500 * 120.00407 * 94.22279 * 13 10 9 15 15 C 1.50709 * 109.46796 * 94.14173 * 14 13 10 16 16 H 1.07999 * 119.99642 * 0.02562 * 15 14 13 17 17 C 1.37868 * 119.99695 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00210 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 120.00197 * 0.02562 * 17 15 14 20 20 H 1.48503 * 109.47423 * 89.99910 * 19 17 15 21 21 H 1.48504 * 109.46897 * 209.99754 * 19 17 15 22 22 H 1.48498 * 109.46813 * 329.99503 * 19 17 15 23 23 C 1.46507 * 119.99632 * 274.22343 * 13 10 9 24 24 C 1.53008 * 109.46837 * 120.00115 * 23 13 10 25 25 C 1.53001 * 109.47227 * 239.99739 * 23 13 10 26 26 H 1.09000 * 109.46862 * 60.00310 * 1 2 3 27 27 H 1.08999 * 109.47139 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47119 * 300.00028 * 1 2 3 29 29 H 1.09007 * 109.46885 * 59.99687 * 3 2 1 30 30 H 1.08991 * 109.47461 * 300.00349 * 3 2 1 31 31 H 1.07993 * 120.00290 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.99838 * 179.97438 * 6 5 4 33 33 H 1.08003 * 119.99557 * 179.97438 * 7 6 5 34 34 H 1.08000 * 119.99897 * 180.29577 * 8 7 6 35 35 H 1.08994 * 109.47119 * 214.14088 * 14 13 10 36 36 H 1.09000 * 109.46970 * 334.14766 * 14 13 10 37 37 H 0.96996 * 120.00362 * 179.97438 * 18 17 15 38 38 H 1.09001 * 109.47418 * 0.02562 * 23 13 10 39 39 H 1.09001 * 109.47020 * 59.99875 * 24 23 13 40 40 H 1.09000 * 109.47038 * 180.02562 * 24 23 13 41 41 H 1.09004 * 109.46784 * 299.99866 * 24 23 13 42 42 H 1.08997 * 109.46642 * 60.00077 * 25 23 13 43 43 H 1.09000 * 109.47064 * 180.02562 * 25 23 13 44 44 H 1.09000 * 109.46802 * 300.00556 * 25 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1865 0.0006 5 6 4.1075 -0.0565 0.1141 6 6 5.4853 -0.1656 0.1141 7 6 6.2686 0.9681 0.0013 8 6 5.6738 2.2099 -0.1178 9 6 4.2956 2.3197 -0.1127 10 16 3.5374 3.9035 -0.2573 11 8 2.6158 4.0071 0.8194 12 8 3.1597 4.0448 -1.6199 13 7 4.7122 5.0368 0.0221 14 6 5.4446 5.6252 -1.1020 15 6 4.7799 6.9131 -1.5154 16 1 3.9003 7.2588 -0.9928 17 6 5.2949 7.6499 -2.5607 18 7 4.7147 8.7736 -2.9219 19 14 6.8159 7.0516 -3.4651 20 1 6.4081 6.1872 -4.6017 21 1 7.5773 8.2184 -3.9790 22 1 7.6715 6.2735 -2.5336 23 6 5.0191 5.4508 1.3935 24 6 6.4848 5.1402 1.7040 25 6 4.7744 6.9541 1.5393 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8899 31 1 3.4956 -0.9419 0.2027 32 1 5.9501 -1.1365 0.2032 33 1 7.3453 0.8827 0.0017 34 1 6.2856 3.0950 -0.2107 35 1 6.4722 5.8273 -0.8002 36 1 5.4423 4.9296 -1.9411 37 1 5.0771 9.2921 -3.6571 38 1 4.3780 4.9088 2.0888 39 1 7.1262 5.6819 1.0088 40 1 6.7131 5.4478 2.7245 41 1 6.6591 4.0693 1.6001 42 1 3.7303 7.1752 1.3180 43 1 5.0032 7.2621 2.5595 44 1 5.4158 7.4956 0.8440 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537600862.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:15 Heat of formation + Delta-G solvation = -108.466229 kcal Electronic energy + Delta-G solvation = -27432.037714 eV Core-core repulsion = 23669.110740 eV Total energy + Delta-G solvation = -3762.926974 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.61506 -38.79619 -38.54867 -38.29293 -36.98019 -34.72709 -33.34166 -32.54838 -32.24370 -29.38768 -28.38506 -27.92045 -26.58915 -24.40694 -24.19982 -22.81510 -21.78956 -19.90834 -19.08680 -18.92137 -18.42740 -17.61315 -17.23632 -17.18654 -17.02225 -16.26297 -15.87497 -15.72935 -15.56717 -15.28543 -14.97252 -14.62679 -14.48719 -14.40556 -13.82502 -13.77768 -13.63150 -13.34802 -13.26073 -13.20631 -13.07317 -13.05560 -12.68089 -12.63145 -12.50887 -12.38112 -12.22620 -12.18013 -11.83508 -11.66625 -11.52617 -11.37464 -11.02262 -10.71740 -10.36876 -9.87534 -9.83249 -8.22400 -6.25733 -0.66208 -0.24857 0.23668 1.38258 1.43079 1.49662 1.88301 2.39252 2.43746 2.47739 2.68135 3.11351 3.46047 3.52691 3.74356 3.87159 3.88365 4.06630 4.13639 4.24399 4.30270 4.36989 4.41885 4.45852 4.50408 4.51253 4.64178 4.76421 4.80894 4.87578 4.94867 4.95317 5.04661 5.09805 5.15332 5.21801 5.26110 5.35186 5.52795 5.55310 5.67015 5.84476 5.86241 5.90574 6.36844 6.76899 7.35140 8.94540 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.014412 B = 0.004719 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1942.389572 B = 5931.906883 C = 6161.617213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.386 6.386 3 C 0.062 3.938 4 C -0.017 4.017 5 C -0.121 4.121 6 C -0.060 4.060 7 C -0.131 4.131 8 C -0.040 4.040 9 C -0.676 4.676 10 S 2.679 3.321 11 O -0.988 6.988 12 O -0.992 6.992 13 N -0.975 5.975 14 C 0.228 3.772 15 C -0.527 4.527 16 H 0.036 0.964 17 C 0.009 3.991 18 N -0.949 5.949 19 Si 0.931 3.069 20 H -0.276 1.276 21 H -0.282 1.282 22 H -0.221 1.221 23 C 0.138 3.862 24 C -0.160 4.160 25 C -0.149 4.149 26 H 0.045 0.955 27 H 0.119 0.881 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.053 0.947 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.170 0.830 34 H 0.148 0.852 35 H 0.069 0.931 36 H 0.031 0.969 37 H 0.265 0.735 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.084 0.916 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.720 -20.241 10.598 23.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.305 6.305 3 C -0.015 4.015 4 C -0.019 4.019 5 C -0.140 4.140 6 C -0.078 4.078 7 C -0.150 4.150 8 C -0.059 4.059 9 C -0.765 4.765 10 S 2.774 3.226 11 O -0.979 6.979 12 O -0.982 6.982 13 N -0.815 5.815 14 C 0.104 3.896 15 C -0.566 4.566 16 H 0.054 0.946 17 C -0.189 4.189 18 N -0.590 5.590 19 Si 0.753 3.247 20 H -0.202 1.202 21 H -0.208 1.208 22 H -0.143 1.143 23 C 0.033 3.967 24 C -0.218 4.218 25 C -0.208 4.208 26 H 0.064 0.936 27 H 0.137 0.863 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.071 0.929 31 H 0.171 0.829 32 H 0.190 0.810 33 H 0.188 0.812 34 H 0.166 0.834 35 H 0.087 0.913 36 H 0.049 0.951 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.103 0.897 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.958 -20.095 10.297 22.924 hybrid contribution -0.035 0.567 -0.904 1.068 sum 3.923 -19.528 9.392 22.021 Atomic orbital electron populations 1.23128 0.78675 1.05028 1.01145 1.87760 1.22040 1.25086 1.95656 1.21721 0.90758 0.87134 1.01848 1.19320 0.93327 0.93836 0.95408 1.21345 0.96165 0.96563 0.99895 1.21955 0.92817 1.00604 0.92409 1.21751 1.02315 0.91302 0.99589 1.21237 0.91117 1.00830 0.92744 1.30416 1.06145 1.19870 1.20045 1.01983 0.73837 0.74055 0.72720 1.93479 1.60762 1.87298 1.56314 1.93563 1.81694 1.86555 1.36419 1.57127 1.57119 1.53594 1.13643 1.19352 0.93927 0.92506 0.83851 1.21644 1.12847 1.06151 1.15974 0.94600 1.25818 1.00785 0.94782 0.97468 1.70063 1.42818 1.16353 1.29744 0.85969 0.79892 0.78733 0.80067 1.20190 1.20752 1.14346 1.21070 0.98910 0.96459 0.80213 1.22229 0.93715 1.02617 1.03288 1.22068 1.00835 0.95716 1.02177 0.93589 0.86284 0.92837 0.89460 0.92935 0.82915 0.80975 0.81220 0.83402 0.91295 0.95075 0.92616 0.88837 0.91833 0.89101 0.90959 0.95693 0.89735 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.39 -10.02 9.20 -148.98 -1.37 -11.40 16 3 C 0.06 1.94 4.95 71.24 0.35 2.30 16 4 C -0.02 -0.52 5.87 -19.87 -0.12 -0.64 16 5 C -0.12 -2.83 9.38 22.27 0.21 -2.62 16 6 C -0.06 -1.05 10.05 22.27 0.22 -0.83 16 7 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 8 C -0.04 -1.05 9.14 22.27 0.20 -0.85 16 9 C -0.68 -22.10 5.83 22.27 0.13 -21.97 16 10 S 2.68 110.72 4.64 -56.49 -0.26 110.46 16 11 O -0.99 -42.07 14.96 -128.00 -1.92 -43.99 16 12 O -0.99 -49.95 16.86 -128.00 -2.16 -52.11 16 13 N -0.98 -38.50 1.77 -497.37 -0.88 -39.38 16 14 C 0.23 10.14 3.42 85.64 0.29 10.43 16 15 C -0.53 -29.71 8.13 25.60 0.21 -29.50 16 16 H 0.04 2.29 7.41 -2.91 -0.02 2.27 16 17 C 0.01 0.51 5.47 84.65 0.46 0.97 16 18 N -0.95 -59.58 13.96 21.44 0.30 -59.28 16 19 Si 0.93 42.03 27.47 68.60 1.88 43.92 16 20 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 22 H -0.22 -8.37 6.54 99.48 0.65 -7.72 16 23 C 0.14 4.49 3.22 44.99 0.15 4.64 16 24 C -0.16 -3.75 9.05 71.98 0.65 -3.09 16 25 C -0.15 -5.35 8.24 71.98 0.59 -4.75 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.09 2.77 7.01 -2.38 -0.02 2.75 16 30 H 0.05 1.79 7.90 -2.39 -0.02 1.77 16 31 H 0.15 3.08 7.02 -2.91 -0.02 3.06 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.17 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.15 3.54 5.98 -2.91 -0.02 3.52 16 35 H 0.07 2.69 5.50 -2.39 -0.01 2.67 16 36 H 0.03 1.41 6.95 -2.39 -0.02 1.39 16 37 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 38 H 0.09 2.85 7.03 -2.39 -0.02 2.83 16 39 H 0.06 1.58 6.69 -2.39 -0.02 1.56 16 40 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.07 1.41 6.70 -2.39 -0.02 1.40 16 42 H 0.02 1.01 7.96 -2.39 -0.02 0.99 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.06 2.44 6.70 -2.39 -0.02 2.43 16 Total: -1.00 -79.16 361.43 1.37 -77.80 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: 0.94 Total: 20.57 kcal Atomic # 6 Polarization: -51.42 SS G_CDS: 4.83 Total: -46.59 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -0.58 Total: -98.67 kcal Atomic # 8 Polarization: -102.05 SS G_CDS: -5.44 Total: -107.49 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.88 Total: 43.92 kcal Atomic # 16 Polarization: 110.72 SS G_CDS: -0.26 Total: 110.46 kcal Total: -79.16 1.37 -77.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537600862.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.667 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds