Wall clock time and date at job start Tue Mar 31 2020 15:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00113 * 269.72136 * 4 3 2 6 6 C 1.38231 * 120.00269 * 179.76764 * 5 4 3 7 7 C 1.38239 * 119.99971 * 0.49096 * 6 5 4 8 8 S 1.76199 * 120.00288 * 179.76812 * 7 6 5 9 9 O 1.42098 * 106.40014 * 23.56213 * 8 7 6 10 10 O 1.42104 * 106.40141 * 156.47756 * 8 7 6 11 11 N 1.65602 * 107.21802 * 270.01876 * 8 7 6 12 12 C 1.46491 * 120.00142 * 270.00113 * 11 8 7 13 13 C 1.50702 * 109.47253 * 94.99606 * 12 11 8 14 14 H 1.07999 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99922 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47089 * 89.99748 * 17 15 13 19 19 H 1.48505 * 109.46959 * 209.99913 * 17 15 13 20 20 H 1.48503 * 109.47199 * 329.99572 * 17 15 13 21 21 C 1.46504 * 119.99517 * 89.99750 * 11 8 7 22 22 C 1.53004 * 109.46592 * 120.00117 * 21 11 8 23 23 C 1.53001 * 109.46873 * 239.99666 * 21 11 8 24 24 C 1.38241 * 119.99569 * 359.78766 * 7 6 5 25 25 C 1.38231 * 120.00247 * 359.95756 * 24 7 6 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 30 30 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 31 31 H 1.08008 * 119.99692 * 0.02562 * 5 4 3 32 32 H 1.08004 * 120.00486 * 180.25344 * 6 5 4 33 33 H 1.08992 * 109.47200 * 215.00075 * 12 11 8 34 34 H 1.09005 * 109.46828 * 335.00057 * 12 11 8 35 35 H 0.97004 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47342 * 0.02562 * 21 11 8 37 37 H 1.08998 * 109.47006 * 60.00126 * 22 21 11 38 38 H 1.08999 * 109.46538 * 179.97438 * 22 21 11 39 39 H 1.08997 * 109.47116 * 299.99935 * 22 21 11 40 40 H 1.09005 * 109.46658 * 60.00761 * 23 21 11 41 41 H 1.08997 * 109.46614 * 180.02562 * 23 21 11 42 42 H 1.08992 * 109.47419 * 300.00747 * 23 21 11 43 43 H 1.08001 * 119.99488 * 179.97438 * 24 7 6 44 44 H 1.08001 * 120.00020 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2015 1.1379 1.1981 6 6 5.5791 1.0239 1.1987 7 6 6.2687 0.9686 0.0018 8 16 8.0252 0.8295 0.0026 9 8 8.3816 0.2552 1.2525 10 8 8.3827 0.2547 -1.2469 11 7 8.6388 2.3676 0.0025 12 6 8.9107 3.0477 -1.2661 13 6 7.7289 3.9049 -1.6400 14 1 6.8622 3.9400 -0.9966 15 6 7.7547 4.6453 -2.8028 16 7 6.7236 5.3938 -3.1287 17 14 9.2541 4.5853 -3.9153 18 1 9.0907 3.4929 -4.9078 19 1 9.3961 5.8820 -4.6251 20 1 10.4676 4.3334 -3.0972 21 6 8.9096 3.0482 1.2713 22 6 10.3958 3.4023 1.3529 23 6 8.0752 4.3281 1.3517 24 6 5.5801 1.0230 -1.1956 25 6 4.2020 1.1317 -1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 3.6631 1.1848 2.1332 32 1 6.1171 0.9818 2.1343 33 1 9.7955 3.6751 -1.1597 34 1 9.0828 2.3061 -2.0463 35 1 6.7415 5.9144 -3.9470 36 1 8.6472 2.3902 2.0998 37 1 10.6586 4.0600 0.5244 38 1 10.5972 3.9090 2.2967 39 1 10.9903 2.4905 1.2955 40 1 7.0163 4.0757 1.2936 41 1 8.2770 4.8346 2.2955 42 1 8.3379 4.9858 0.5232 43 1 6.1188 0.9803 -2.1307 44 1 3.6641 1.1738 -2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000540336703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:20 Heat of formation + Delta-G solvation = -91.647415 kcal Electronic energy + Delta-G solvation = -27012.044628 eV Core-core repulsion = 23249.846973 eV Total energy + Delta-G solvation = -3762.197655 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.29082 -37.58635 -37.04937 -36.71326 -35.31923 -32.74754 -32.12126 -30.89178 -30.76747 -27.50285 -27.48767 -26.63027 -25.52193 -22.64599 -22.41669 -21.65824 -20.34975 -18.39660 -17.60733 -17.05047 -16.79959 -16.52354 -16.18093 -15.95744 -15.45242 -14.71342 -14.41729 -14.23060 -13.92773 -13.67805 -13.64394 -13.25741 -12.98648 -12.82571 -12.56789 -12.41638 -12.08514 -12.02457 -11.87526 -11.61979 -11.56470 -11.44611 -11.37136 -11.16219 -10.99321 -10.95615 -10.84541 -10.49737 -10.40436 -10.18428 -10.01683 -9.87408 -9.47544 -9.01029 -8.70301 -8.63505 -8.10748 -6.15181 -4.14400 0.86868 1.16160 1.63126 3.25376 3.31404 3.35212 3.37002 3.66553 4.04021 4.32010 4.35317 4.73245 4.80518 4.89152 5.11764 5.13830 5.15606 5.16902 5.28423 5.30661 5.33255 5.45403 5.56825 5.62852 5.66349 5.81368 5.93022 5.97783 6.13867 6.19538 6.24671 6.36821 6.43415 6.45453 6.49107 6.64070 6.67141 6.89023 6.93988 7.04990 7.11445 7.21955 7.41023 7.55140 8.41897 8.90588 9.45617 10.96792 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004925 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.185327 B = 5683.849439 C = 6862.070169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.098 3.902 4 C -0.046 4.046 5 C -0.127 4.127 6 C -0.027 4.027 7 C -0.657 4.657 8 S 2.689 3.311 9 O -0.976 6.976 10 O -0.961 6.961 11 N -0.972 5.972 12 C 0.210 3.790 13 C -0.536 4.536 14 H 0.085 0.915 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.864 3.136 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.263 1.263 21 C 0.148 3.852 22 C -0.157 4.157 23 C -0.157 4.157 24 C 0.006 3.994 25 C -0.117 4.117 26 H 0.086 0.914 27 H 0.041 0.959 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.042 0.958 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.084 0.916 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.263 -5.614 8.422 11.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.022 3.978 4 C -0.046 4.046 5 C -0.146 4.146 6 C -0.047 4.047 7 C -0.743 4.743 8 S 2.780 3.220 9 O -0.967 6.967 10 O -0.951 6.951 11 N -0.810 5.810 12 C 0.087 3.913 13 C -0.575 4.575 14 H 0.103 0.897 15 C -0.126 4.126 16 N -0.531 5.531 17 Si 0.691 3.309 18 H -0.198 1.198 19 H -0.212 1.212 20 H -0.188 1.188 21 C 0.042 3.958 22 C -0.216 4.216 23 C -0.215 4.215 24 C -0.014 4.014 25 C -0.136 4.136 26 H 0.104 0.896 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.144 0.856 32 H 0.153 0.847 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.104 0.896 43 H 0.162 0.838 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.746 -6.418 8.268 11.940 hybrid contribution -0.375 0.900 -0.801 1.261 sum -6.121 -5.519 7.467 11.121 Atomic orbital electron populations 1.22762 0.81011 1.02776 1.00058 1.87976 1.19595 1.27364 1.95442 1.21441 0.89876 0.85078 1.01391 1.19754 0.93799 0.97158 0.93904 1.20998 0.94241 1.01992 0.97399 1.20788 0.94435 0.92972 0.96480 1.31128 1.27692 1.16209 0.99263 1.01864 0.73803 0.73237 0.73063 1.93508 1.82644 1.76147 1.44372 1.93537 1.82159 1.75777 1.43624 1.57258 1.77177 1.33753 1.12829 1.19641 0.98157 0.93694 0.79798 1.21505 1.02405 1.26183 1.07427 0.89709 1.24823 0.95684 0.94843 0.97223 1.69888 1.29818 1.28665 1.24776 0.87034 0.84276 0.77826 0.81803 1.19774 1.21188 1.18776 1.20725 0.95496 0.94975 0.84596 1.22107 0.95764 1.01731 1.02018 1.22197 0.99868 0.97696 1.01789 1.20919 0.94237 0.89158 0.97055 1.21120 0.94446 1.00414 0.97592 0.89581 0.94043 0.93927 0.91841 0.92115 0.85607 0.84708 0.93988 0.93848 0.92612 0.89784 0.91550 0.92105 0.92787 0.92713 0.93541 0.89569 0.83835 0.85295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.93 10.69 -35.23 -0.38 -5.31 16 3 C 0.10 1.21 6.06 36.01 0.22 1.43 16 4 C -0.05 -0.70 5.51 -104.62 -0.58 -1.27 16 5 C -0.13 -1.89 9.70 -39.58 -0.38 -2.27 16 6 C -0.03 -0.45 9.52 -39.58 -0.38 -0.82 16 7 C -0.66 -12.16 5.97 -39.58 -0.24 -12.40 16 8 S 2.69 52.84 5.69 -107.50 -0.61 52.23 16 9 O -0.98 -19.27 15.85 -57.17 -0.91 -20.18 16 10 O -0.96 -21.20 15.84 -57.17 -0.91 -22.10 16 11 N -0.97 -19.05 2.73 -108.57 -0.30 -19.35 16 12 C 0.21 4.68 4.07 -5.20 -0.02 4.66 16 13 C -0.54 -13.48 8.08 -34.44 -0.28 -13.75 16 14 H 0.08 2.28 7.32 -52.49 -0.38 1.90 16 15 C 0.08 2.05 5.47 -17.82 -0.10 1.96 16 16 N -0.89 -25.31 13.96 55.43 0.77 -24.54 16 17 Si 0.86 20.19 27.47 -169.99 -4.67 15.52 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.26 -5.85 6.54 56.52 0.37 -5.48 16 21 C 0.15 2.49 3.24 -67.93 -0.22 2.27 16 22 C -0.16 -2.34 9.16 37.16 0.34 -2.00 16 23 C -0.16 -2.64 8.20 37.16 0.30 -2.34 16 24 C 0.01 0.10 9.52 -39.58 -0.38 -0.27 16 25 C -0.12 -1.96 9.70 -39.58 -0.38 -2.34 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 30 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 31 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.14 1.93 7.62 -52.48 -0.40 1.53 16 33 H 0.04 0.91 5.51 -51.93 -0.29 0.63 16 34 H 0.04 1.01 6.34 -51.93 -0.33 0.68 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.08 1.30 6.91 -51.93 -0.36 0.94 16 37 H 0.07 1.04 6.69 -51.93 -0.35 0.69 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.97 7.93 -51.93 -0.41 0.55 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.09 1.68 6.65 -51.93 -0.35 1.33 16 43 H 0.14 2.75 7.62 -52.49 -0.40 2.35 16 44 H 0.13 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 370.24 15.07 5.58 5.58 Total: -1.00 -31.32 370.24 -9.04 -40.36 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -6.65 Total: 3.56 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: -0.98 Total: -25.78 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.48 Total: -43.89 kcal Atomic # 8 Polarization: -45.40 SS G_CDS: -2.19 Total: -47.59 kcal Atomic # 14 Polarization: 20.19 SS G_CDS: -4.67 Total: 15.52 kcal Atomic # 16 Polarization: 52.84 SS G_CDS: -0.61 Total: 52.23 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.32 -9.04 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540336703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.291 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds