Wall clock time and date at job start Tue Mar 31 2020 15:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.50699 * 109.46785 * 179.97438 * 3 2 1 5 5 C 1.38236 * 120.00113 * 269.72136 * 4 3 2 6 6 C 1.38231 * 120.00269 * 179.76764 * 5 4 3 7 7 C 1.38239 * 119.99971 * 0.49096 * 6 5 4 8 8 S 1.76199 * 120.00288 * 179.76812 * 7 6 5 9 9 O 1.42098 * 106.40014 * 23.56213 * 8 7 6 10 10 O 1.42104 * 106.40141 * 156.47756 * 8 7 6 11 11 N 1.65602 * 107.21802 * 270.01876 * 8 7 6 12 12 C 1.46491 * 120.00142 * 270.00113 * 11 8 7 13 13 C 1.50702 * 109.47253 * 94.99606 * 12 11 8 14 14 H 1.07999 * 119.99973 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00057 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00040 * 180.02562 * 15 13 12 17 17 Si 1.86804 * 119.99922 * 0.02562 * 15 13 12 18 18 H 1.48497 * 109.47089 * 89.99748 * 17 15 13 19 19 H 1.48505 * 109.46959 * 209.99913 * 17 15 13 20 20 H 1.48503 * 109.47199 * 329.99572 * 17 15 13 21 21 C 1.46504 * 119.99517 * 89.99750 * 11 8 7 22 22 C 1.53004 * 109.46592 * 120.00117 * 21 11 8 23 23 C 1.53001 * 109.46873 * 239.99666 * 21 11 8 24 24 C 1.38241 * 119.99569 * 359.78766 * 7 6 5 25 25 C 1.38231 * 120.00247 * 359.95756 * 24 7 6 26 26 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 28 28 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 29 29 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 30 30 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 31 31 H 1.08008 * 119.99692 * 0.02562 * 5 4 3 32 32 H 1.08004 * 120.00486 * 180.25344 * 6 5 4 33 33 H 1.08992 * 109.47200 * 215.00075 * 12 11 8 34 34 H 1.09005 * 109.46828 * 335.00057 * 12 11 8 35 35 H 0.97004 * 120.00229 * 180.02562 * 16 15 13 36 36 H 1.08998 * 109.47342 * 0.02562 * 21 11 8 37 37 H 1.08998 * 109.47006 * 60.00126 * 22 21 11 38 38 H 1.08999 * 109.46538 * 179.97438 * 22 21 11 39 39 H 1.08997 * 109.47116 * 299.99935 * 22 21 11 40 40 H 1.09005 * 109.46658 * 60.00761 * 23 21 11 41 41 H 1.08997 * 109.46614 * 180.02562 * 23 21 11 42 42 H 1.08992 * 109.47419 * 300.00747 * 23 21 11 43 43 H 1.08001 * 119.99488 * 179.97438 * 24 7 6 44 44 H 1.08001 * 120.00020 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2015 1.1379 1.1981 6 6 5.5791 1.0239 1.1987 7 6 6.2687 0.9686 0.0018 8 16 8.0252 0.8295 0.0026 9 8 8.3816 0.2552 1.2525 10 8 8.3827 0.2547 -1.2469 11 7 8.6388 2.3676 0.0025 12 6 8.9107 3.0477 -1.2661 13 6 7.7289 3.9049 -1.6400 14 1 6.8622 3.9400 -0.9966 15 6 7.7547 4.6453 -2.8028 16 7 6.7236 5.3938 -3.1287 17 14 9.2541 4.5853 -3.9153 18 1 9.0907 3.4929 -4.9078 19 1 9.3961 5.8820 -4.6251 20 1 10.4676 4.3334 -3.0972 21 6 8.9096 3.0482 1.2713 22 6 10.3958 3.4023 1.3529 23 6 8.0752 4.3281 1.3517 24 6 5.5801 1.0230 -1.1956 25 6 4.2020 1.1317 -1.1962 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.6886 1.8464 -0.8900 30 1 1.6886 1.8464 0.8899 31 1 3.6631 1.1848 2.1332 32 1 6.1171 0.9818 2.1343 33 1 9.7955 3.6751 -1.1597 34 1 9.0828 2.3061 -2.0463 35 1 6.7415 5.9144 -3.9470 36 1 8.6472 2.3902 2.0998 37 1 10.6586 4.0600 0.5244 38 1 10.5972 3.9090 2.2967 39 1 10.9903 2.4905 1.2955 40 1 7.0163 4.0757 1.2936 41 1 8.2770 4.8346 2.2955 42 1 8.3379 4.9858 0.5232 43 1 6.1188 0.9803 -2.1307 44 1 3.6641 1.1738 -2.1318 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000540336703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:19 Heat of formation + Delta-G solvation = -112.416242 kcal Electronic energy + Delta-G solvation = -27012.945232 eV Core-core repulsion = 23249.846973 eV Total energy + Delta-G solvation = -3763.098259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.48400 -38.58056 -38.51904 -38.32630 -36.94018 -34.69225 -33.31063 -32.47450 -32.05646 -29.31086 -28.41145 -27.89191 -26.43826 -24.30518 -23.88696 -22.89624 -21.78872 -19.88058 -19.19255 -18.76037 -18.50542 -17.39531 -17.36812 -17.08511 -16.81770 -16.24437 -15.78143 -15.62162 -15.40269 -15.00035 -14.86834 -14.63255 -14.51934 -14.38473 -13.94727 -13.75291 -13.63352 -13.26172 -13.18512 -13.08382 -13.04148 -12.92901 -12.66210 -12.59232 -12.38268 -12.34000 -12.20383 -12.16962 -11.86410 -11.78090 -11.54106 -11.32710 -10.70575 -10.69302 -10.30312 -10.00332 -9.72647 -8.20956 -6.21828 -0.58816 -0.22445 0.33533 1.38381 1.42911 1.48476 1.94990 2.38408 2.39226 2.75007 3.06049 3.13883 3.29083 3.71497 3.79341 3.89516 3.93036 4.17390 4.29594 4.34332 4.35699 4.37425 4.51890 4.54901 4.55050 4.59376 4.72015 4.85784 4.89412 4.94922 4.96681 4.99820 5.07639 5.08913 5.13711 5.16082 5.29781 5.39605 5.53254 5.56118 5.73522 5.84184 5.91506 6.13528 6.39358 6.83333 7.40102 8.93699 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011816 B = 0.004925 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.185327 B = 5683.849439 C = 6862.070169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.410 6.410 3 C 0.100 3.900 4 C -0.047 4.047 5 C -0.123 4.123 6 C -0.034 4.034 7 C -0.672 4.672 8 S 2.696 3.304 9 O -0.977 6.977 10 O -0.992 6.992 11 N -0.975 5.975 12 C 0.217 3.783 13 C -0.518 4.518 14 H 0.059 0.941 15 C 0.026 3.974 16 N -0.937 5.937 17 Si 0.912 3.088 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.242 1.242 21 C 0.138 3.862 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.023 4.023 25 C -0.131 4.131 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.164 0.836 32 H 0.156 0.844 33 H 0.054 0.946 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.102 0.898 37 H 0.054 0.946 38 H 0.092 0.908 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.055 0.945 43 H 0.124 0.876 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -5.709 10.540 13.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.330 6.330 3 C 0.024 3.976 4 C -0.047 4.047 5 C -0.142 4.142 6 C -0.053 4.053 7 C -0.760 4.760 8 S 2.790 3.210 9 O -0.968 6.968 10 O -0.983 6.983 11 N -0.813 5.813 12 C 0.093 3.907 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.173 4.173 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.201 1.201 19 H -0.210 1.210 20 H -0.165 1.165 21 C 0.033 3.967 22 C -0.215 4.215 23 C -0.208 4.208 24 C -0.043 4.043 25 C -0.150 4.150 26 H 0.116 0.884 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.181 0.819 32 H 0.174 0.826 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.120 0.880 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.005 -6.526 10.410 13.675 hybrid contribution -0.436 0.886 -1.352 1.674 sum -6.441 -5.640 9.058 12.463 Atomic orbital electron populations 1.22986 0.78907 1.04018 1.01269 1.87928 1.21886 1.27458 1.95696 1.21468 0.87736 0.85425 1.02965 1.20187 0.95810 0.95336 0.93364 1.21457 0.93773 1.00115 0.98822 1.21141 0.95449 0.92372 0.96309 1.30901 1.26737 1.18174 1.00207 1.01443 0.74160 0.73046 0.72364 1.93491 1.83090 1.76216 1.43984 1.93489 1.83093 1.76630 1.45083 1.57225 1.77539 1.33585 1.12954 1.19403 0.97221 0.93167 0.80953 1.21613 1.02342 1.25353 1.06407 0.92264 1.25497 0.98065 0.94939 0.98791 1.70007 1.31878 1.30333 1.25554 0.86236 0.82200 0.77562 0.80297 1.20129 1.21035 1.16529 1.21070 0.96967 0.95012 0.83690 1.22119 0.94079 1.01996 1.03305 1.22097 0.98925 0.97422 1.02332 1.20905 0.95399 0.91327 0.96643 1.21345 0.93813 1.00641 0.99171 0.88431 0.92392 0.93125 0.91214 0.89638 0.81859 0.82639 0.92807 0.94790 0.92754 0.87979 0.92667 0.88946 0.92450 0.94190 0.90102 0.92603 0.85809 0.84284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 11.01 113.37 1.25 1.60 16 2 O -0.41 -9.63 10.69 -148.98 -1.59 -11.22 16 3 C 0.10 2.24 6.06 71.24 0.43 2.67 16 4 C -0.05 -1.36 5.51 -19.87 -0.11 -1.47 16 5 C -0.12 -3.37 9.70 22.27 0.22 -3.15 16 6 C -0.03 -1.05 9.52 22.27 0.21 -0.84 16 7 C -0.67 -25.16 5.97 22.27 0.13 -25.03 16 8 S 2.70 106.57 5.69 -56.49 -0.32 106.25 16 9 O -0.98 -37.63 15.85 -128.00 -2.03 -39.66 16 10 O -0.99 -45.08 15.84 -128.00 -2.03 -47.11 16 11 N -0.97 -37.99 2.73 -497.42 -1.36 -39.35 16 12 C 0.22 9.70 4.07 85.64 0.35 10.05 16 13 C -0.52 -26.64 8.08 25.60 0.21 -26.44 16 14 H 0.06 3.31 7.32 -2.91 -0.02 3.29 16 15 C 0.03 1.39 5.47 84.66 0.46 1.86 16 16 N -0.94 -54.62 13.96 21.45 0.30 -54.32 16 17 Si 0.91 41.76 27.47 68.60 1.88 43.65 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 20 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 21 C 0.14 4.41 3.24 44.99 0.15 4.55 16 22 C -0.16 -4.28 9.16 71.98 0.66 -3.62 16 23 C -0.15 -4.85 8.20 71.98 0.59 -4.26 16 24 C -0.02 -0.91 9.52 22.27 0.21 -0.70 16 25 C -0.13 -4.45 9.70 22.27 0.22 -4.24 16 26 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.46 8.09 -2.39 -0.02 1.44 16 30 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 31 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 32 H 0.16 4.09 7.62 -2.91 -0.02 4.07 16 33 H 0.05 2.29 5.51 -2.39 -0.01 2.28 16 34 H 0.03 1.60 6.34 -2.38 -0.02 1.59 16 35 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 36 H 0.10 2.91 6.91 -2.39 -0.02 2.90 16 37 H 0.05 1.63 6.69 -2.39 -0.02 1.61 16 38 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.04 1.39 7.93 -2.38 -0.02 1.37 16 41 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 2.16 6.65 -2.39 -0.02 2.14 16 43 H 0.12 5.16 7.62 -2.91 -0.02 5.13 16 44 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -68.77 370.24 0.76 -68.01 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.93 Total: 22.75 kcal Atomic # 6 Polarization: -53.97 SS G_CDS: 4.97 Total: -49.00 kcal Atomic # 7 Polarization: -92.62 SS G_CDS: -1.06 Total: -93.67 kcal Atomic # 8 Polarization: -92.33 SS G_CDS: -5.65 Total: -97.98 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 1.88 Total: 43.65 kcal Atomic # 16 Polarization: 106.57 SS G_CDS: -0.32 Total: 106.25 kcal Total: -68.77 0.76 -68.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000540336703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.405 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds