Wall clock time and date at job start Tue Mar 31 2020 15:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47083 * 2 1 4 4 C 1.35902 * 116.99660 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05747 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94460 * 180.28037 * 5 4 3 7 7 C 1.38290 * 120.05527 * 359.48688 * 6 5 4 8 8 S 1.76191 * 119.94656 * 180.26098 * 7 6 5 9 9 O 1.42101 * 106.40336 * 23.78641 * 8 7 6 10 10 O 1.42097 * 106.40700 * 156.71398 * 8 7 6 11 11 N 1.65609 * 107.21535 * 270.25108 * 8 7 6 12 12 C 1.46502 * 119.99866 * 65.23790 * 11 8 7 13 13 H 1.09003 * 109.47072 * 336.25250 * 12 11 8 14 14 C 1.50693 * 109.47026 * 216.24729 * 12 11 8 15 15 H 1.08003 * 119.99996 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00292 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00203 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 119.99447 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47120 * 90.00202 * 18 16 14 20 20 H 1.48502 * 109.46704 * 209.99753 * 18 16 14 21 21 H 1.48496 * 109.47243 * 329.99551 * 18 16 14 22 22 C 1.52999 * 109.47178 * 96.24877 * 12 11 8 23 23 C 1.52999 * 109.47158 * 58.25410 * 22 12 11 24 24 C 1.38243 * 120.10829 * 0.50987 * 7 6 5 25 25 C 1.38167 * 120.05745 * 359.74927 * 24 7 6 26 26 C 1.50708 * 120.02840 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.46675 * 60.00121 * 1 2 3 28 28 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47151 * 300.00414 * 1 2 3 30 30 H 1.09002 * 109.46915 * 239.99795 * 2 1 3 31 31 H 1.09000 * 109.46675 * 119.99879 * 2 1 3 32 32 H 1.08006 * 120.02836 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.97040 * 179.72620 * 6 5 4 34 34 H 0.96993 * 120.00079 * 245.23466 * 11 8 7 35 35 H 0.97003 * 119.99837 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47035 * 178.25811 * 22 12 11 37 37 H 1.09007 * 109.46901 * 298.25620 * 22 12 11 38 38 H 1.09008 * 109.47012 * 175.69035 * 23 22 12 39 39 H 1.08997 * 109.46956 * 295.68875 * 23 22 12 40 40 H 1.08998 * 109.46983 * 55.69501 * 23 22 12 41 41 H 1.08001 * 119.97361 * 179.72278 * 24 7 6 42 42 H 1.09006 * 109.46549 * 270.02051 * 26 25 24 43 43 H 1.08992 * 109.47171 * 30.01653 * 26 25 24 44 44 H 1.08995 * 109.47147 * 150.02055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.2000 0.4257 0.0005 6 6 5.5689 0.6093 0.0069 7 6 6.0963 1.8877 0.0026 8 16 7.8430 2.1185 0.0039 9 8 8.4050 0.9324 -0.5407 10 8 8.0776 3.4103 -0.5397 11 7 8.3279 2.1820 1.5861 12 6 8.1900 1.0013 2.4424 13 1 7.4080 0.3540 2.0455 14 6 7.8238 1.4336 3.8388 15 1 7.7060 2.4828 4.0658 16 6 7.6391 0.4895 4.8266 17 7 7.3199 0.8668 6.0453 18 14 7.8435 -1.3253 4.4340 19 1 9.2555 -1.7249 4.6615 20 1 6.9546 -2.1253 5.3144 21 1 7.4829 -1.5683 3.0141 22 6 9.5156 0.2380 2.4760 23 6 10.6221 1.1600 2.9922 24 6 5.2553 2.9848 0.0026 25 6 3.8852 2.8065 0.0016 26 6 2.9689 4.0031 0.0021 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5729 0.0005 33 1 6.2280 -0.2463 0.0114 34 1 8.7033 3.0008 1.9459 35 1 7.1896 0.2026 6.7401 36 1 9.4222 -0.6233 3.1375 37 1 9.7650 -0.1014 1.4706 38 1 11.5497 0.5956 3.0887 39 1 10.7677 1.9811 2.2902 40 1 10.3372 1.5599 3.9653 41 1 5.6695 3.9823 0.0037 42 1 2.7477 4.2908 1.0300 43 1 3.4547 4.8329 -0.5109 44 1 2.0416 3.7508 -0.5122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000547280297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:22 Heat of formation + Delta-G solvation = -95.967132 kcal Electronic energy + Delta-G solvation = -26789.925794 eV Core-core repulsion = 23027.540821 eV Total energy + Delta-G solvation = -3762.384972 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.36941 -37.68918 -36.90548 -36.23415 -35.39074 -33.07030 -32.25145 -31.85125 -30.80497 -30.00720 -26.96405 -26.79305 -24.35092 -23.34456 -22.41461 -21.49563 -20.47606 -18.82010 -18.28613 -17.46597 -16.87680 -16.37039 -16.35237 -16.14836 -15.60558 -14.76408 -14.48887 -14.07501 -13.96980 -13.82333 -13.41550 -13.21803 -13.13707 -13.06503 -12.87856 -12.73392 -12.54758 -12.16775 -12.09568 -11.94725 -11.88155 -11.66107 -11.56912 -11.26113 -11.05558 -10.91910 -10.90674 -10.68696 -10.68079 -10.50460 -10.06505 -9.49090 -9.33494 -8.89969 -8.78523 -8.47632 -8.38154 -6.21532 -4.22130 0.85319 1.11444 1.32836 2.95195 3.18748 3.28009 3.29819 3.39551 3.72605 4.23393 4.27573 4.55544 4.65745 4.69167 4.73155 4.97180 4.98140 5.10468 5.14693 5.25847 5.34173 5.48129 5.50863 5.58694 5.69495 5.74785 5.83379 5.90823 5.94984 6.02168 6.17141 6.21493 6.22302 6.29858 6.32632 6.68781 6.69892 6.80469 6.95031 7.11904 7.22457 7.24286 7.42337 7.85712 8.37022 8.81474 9.38386 10.90805 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.005013 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.514590 B = 5583.636930 C = 6935.863663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.309 6.309 4 C 0.178 3.822 5 C -0.226 4.226 6 C 0.019 3.981 7 C -0.699 4.699 8 S 2.693 3.307 9 O -0.966 6.966 10 O -0.978 6.978 11 N -1.090 6.090 12 C 0.251 3.749 13 H 0.038 0.962 14 C -0.519 4.519 15 H 0.084 0.916 16 C 0.078 3.922 17 N -0.891 5.891 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.295 1.295 21 H -0.264 1.264 22 C -0.147 4.147 23 C -0.135 4.135 24 C 0.020 3.980 25 C -0.140 4.140 26 C -0.103 4.103 27 H 0.065 0.935 28 H 0.078 0.922 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.415 0.585 35 H 0.266 0.734 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.145 0.855 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.610 -0.295 -11.682 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.223 6.223 4 C 0.132 3.868 5 C -0.246 4.246 6 C 0.000 4.000 7 C -0.785 4.785 8 S 2.782 3.218 9 O -0.956 6.956 10 O -0.968 6.968 11 N -0.851 5.851 12 C 0.145 3.855 13 H 0.055 0.945 14 C -0.559 4.559 15 H 0.102 0.898 16 C -0.126 4.126 17 N -0.528 5.528 18 Si 0.705 3.295 19 H -0.199 1.199 20 H -0.222 1.222 21 H -0.189 1.189 22 C -0.186 4.186 23 C -0.193 4.193 24 C 0.000 4.000 25 C -0.142 4.142 26 C -0.160 4.160 27 H 0.084 0.916 28 H 0.097 0.903 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.250 0.750 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.051 0.949 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.390 -0.320 -12.303 15.481 hybrid contribution -0.408 -1.227 0.588 1.420 sum -9.799 -1.546 -11.715 15.351 Atomic orbital electron populations 1.21770 0.92555 1.02923 1.03538 1.22883 0.96004 0.81817 1.01895 1.86066 1.18917 1.29615 1.87656 1.18995 0.82136 0.93820 0.91889 1.21277 0.94316 0.98185 1.10810 1.20705 0.94986 0.95664 0.88627 1.30916 1.27311 0.99543 1.20752 1.01710 0.73680 0.73269 0.73148 1.93551 1.75629 1.49136 1.77319 1.93528 1.85127 1.40526 1.77617 1.55273 1.77385 1.22743 1.29695 1.18911 0.92677 0.82104 0.91795 0.94458 1.21038 1.47854 0.95982 0.90976 0.89805 1.24850 0.94345 0.98553 0.94803 1.69863 1.47086 1.34291 1.01607 0.87046 0.77949 0.85913 0.78606 1.19947 1.22223 1.18914 1.22294 0.98168 0.98573 0.99538 1.21576 0.96381 0.98813 1.02487 1.20598 0.91581 0.98047 0.89742 1.19303 0.94243 0.92760 1.07896 1.20604 0.98262 0.94453 1.02650 0.91574 0.90297 0.91363 0.91793 0.91483 0.84790 0.84115 0.75029 0.92389 0.92893 0.92917 0.94867 0.93763 0.90771 0.83748 0.91073 0.91391 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.47 5.46 37.16 0.20 0.67 16 3 O -0.31 -3.95 9.18 -19.43 -0.18 -4.12 16 4 C 0.18 2.60 6.66 -39.22 -0.26 2.34 16 5 C -0.23 -3.31 9.04 -39.43 -0.36 -3.67 16 6 C 0.02 0.32 8.89 -39.60 -0.35 -0.03 16 7 C -0.70 -11.98 5.84 -39.56 -0.23 -12.21 16 8 S 2.69 48.95 5.64 -107.50 -0.61 48.34 16 9 O -0.97 -19.32 16.70 -57.17 -0.95 -20.27 16 10 O -0.98 -18.60 17.28 -57.17 -0.99 -19.59 16 11 N -1.09 -20.79 4.74 -5.88 -0.03 -20.81 16 12 C 0.25 5.54 2.06 -69.09 -0.14 5.39 16 13 H 0.04 0.83 6.30 -51.93 -0.33 0.50 16 14 C -0.52 -13.26 8.10 -34.44 -0.28 -13.54 16 15 H 0.08 2.30 8.06 -52.48 -0.42 1.87 16 16 C 0.08 2.09 5.45 -17.82 -0.10 2.00 16 17 N -0.89 -25.58 13.96 55.43 0.77 -24.81 16 18 Si 0.88 20.63 24.39 -169.99 -4.15 16.48 16 19 H -0.27 -6.29 6.85 56.52 0.39 -5.91 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 H -0.26 -5.90 6.53 56.52 0.37 -5.54 16 22 C -0.15 -3.12 5.39 -26.73 -0.14 -3.27 16 23 C -0.14 -2.63 9.51 37.16 0.35 -2.28 16 24 C 0.02 0.31 9.17 -39.61 -0.36 -0.05 16 25 C -0.14 -2.07 5.89 -104.47 -0.62 -2.69 16 26 C -0.10 -1.21 9.79 36.01 0.35 -0.86 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.53 7.66 -51.93 -0.40 0.14 16 31 H 0.07 0.63 7.66 -51.93 -0.40 0.23 16 32 H 0.13 1.57 6.30 -52.48 -0.33 1.24 16 33 H 0.14 2.20 7.62 -52.49 -0.40 1.80 16 34 H 0.41 7.26 8.68 -34.48 -0.30 6.96 16 35 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.05 1.17 3.24 -51.93 -0.17 1.01 16 37 H 0.05 1.07 7.80 -51.93 -0.40 0.66 16 38 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 39 H 0.04 0.78 7.58 -51.93 -0.39 0.38 16 40 H 0.07 1.57 7.13 -51.93 -0.37 1.20 16 41 H 0.14 2.03 7.61 -52.49 -0.40 1.63 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.69 8.09 -51.93 -0.42 0.27 16 44 H 0.07 0.76 7.53 -51.93 -0.39 0.37 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -31.79 364.19 -8.61 -40.40 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -6.42 Total: 7.78 kcal Atomic # 6 Polarization: -27.34 SS G_CDS: -1.55 Total: -28.89 kcal Atomic # 7 Polarization: -46.37 SS G_CDS: 0.75 Total: -45.62 kcal Atomic # 8 Polarization: -41.86 SS G_CDS: -2.12 Total: -43.98 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.15 Total: 16.48 kcal Atomic # 16 Polarization: 48.95 SS G_CDS: -0.61 Total: 48.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.79 -8.61 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547280297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.567 kcal (2) G-P(sol) polarization free energy of solvation -31.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds