Wall clock time and date at job start Tue Mar 31 2020 15:36:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42902 * 109.47083 * 2 1 4 4 C 1.35902 * 116.99660 * 179.97438 * 3 2 1 5 5 C 1.38752 * 120.05747 * 0.02562 * 4 3 2 6 6 C 1.38122 * 119.94460 * 180.28037 * 5 4 3 7 7 C 1.38290 * 120.05527 * 359.48688 * 6 5 4 8 8 S 1.76191 * 119.94656 * 180.26098 * 7 6 5 9 9 O 1.42101 * 106.40336 * 23.78641 * 8 7 6 10 10 O 1.42097 * 106.40700 * 156.71398 * 8 7 6 11 11 N 1.65609 * 107.21535 * 270.25108 * 8 7 6 12 12 C 1.46502 * 119.99866 * 65.23790 * 11 8 7 13 13 H 1.09003 * 109.47072 * 336.25250 * 12 11 8 14 14 C 1.50693 * 109.47026 * 216.24729 * 12 11 8 15 15 H 1.08003 * 119.99996 * 359.97438 * 14 12 11 16 16 C 1.37879 * 120.00292 * 179.97438 * 14 12 11 17 17 N 1.31508 * 120.00203 * 179.97438 * 16 14 12 18 18 Si 1.86803 * 119.99447 * 0.02562 * 16 14 12 19 19 H 1.48498 * 109.47120 * 90.00202 * 18 16 14 20 20 H 1.48502 * 109.46704 * 209.99753 * 18 16 14 21 21 H 1.48496 * 109.47243 * 329.99551 * 18 16 14 22 22 C 1.52999 * 109.47178 * 96.24877 * 12 11 8 23 23 C 1.52999 * 109.47158 * 58.25410 * 22 12 11 24 24 C 1.38243 * 120.10829 * 0.50987 * 7 6 5 25 25 C 1.38167 * 120.05745 * 359.74927 * 24 7 6 26 26 C 1.50708 * 120.02840 * 179.97438 * 25 24 7 27 27 H 1.09000 * 109.46675 * 60.00121 * 1 2 3 28 28 H 1.08996 * 109.47308 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47151 * 300.00414 * 1 2 3 30 30 H 1.09002 * 109.46915 * 239.99795 * 2 1 3 31 31 H 1.09000 * 109.46675 * 119.99879 * 2 1 3 32 32 H 1.08006 * 120.02836 * 359.97438 * 5 4 3 33 33 H 1.08001 * 119.97040 * 179.72620 * 6 5 4 34 34 H 0.96993 * 120.00079 * 245.23466 * 11 8 7 35 35 H 0.97003 * 119.99837 * 179.97438 * 17 16 14 36 36 H 1.08996 * 109.47035 * 178.25811 * 22 12 11 37 37 H 1.09007 * 109.46901 * 298.25620 * 22 12 11 38 38 H 1.09008 * 109.47012 * 175.69035 * 23 22 12 39 39 H 1.08997 * 109.46956 * 295.68875 * 23 22 12 40 40 H 1.08998 * 109.46983 * 55.69501 * 23 22 12 41 41 H 1.08001 * 119.97361 * 179.72278 * 24 7 6 42 42 H 1.09006 * 109.46549 * 270.02051 * 26 25 24 43 43 H 1.08992 * 109.47171 * 30.01653 * 26 25 24 44 44 H 1.08995 * 109.47147 * 150.02055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3537 1.5253 0.0005 5 6 4.2000 0.4257 0.0005 6 6 5.5689 0.6093 0.0069 7 6 6.0963 1.8877 0.0026 8 16 7.8430 2.1185 0.0039 9 8 8.4050 0.9324 -0.5407 10 8 8.0776 3.4103 -0.5397 11 7 8.3279 2.1820 1.5861 12 6 8.1900 1.0013 2.4424 13 1 7.4080 0.3540 2.0455 14 6 7.8238 1.4336 3.8388 15 1 7.7060 2.4828 4.0658 16 6 7.6391 0.4895 4.8266 17 7 7.3199 0.8668 6.0453 18 14 7.8435 -1.3253 4.4340 19 1 9.2555 -1.7249 4.6615 20 1 6.9546 -2.1253 5.3144 21 1 7.4829 -1.5683 3.0141 22 6 9.5156 0.2380 2.4760 23 6 10.6221 1.1600 2.9922 24 6 5.2553 2.9848 0.0026 25 6 3.8852 2.8065 0.0016 26 6 2.9689 4.0031 0.0021 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.7886 -0.5729 0.0005 33 1 6.2280 -0.2463 0.0114 34 1 8.7033 3.0008 1.9459 35 1 7.1896 0.2026 6.7401 36 1 9.4222 -0.6233 3.1375 37 1 9.7650 -0.1014 1.4706 38 1 11.5497 0.5956 3.0887 39 1 10.7677 1.9811 2.2902 40 1 10.3372 1.5599 3.9653 41 1 5.6695 3.9823 0.0037 42 1 2.7477 4.2908 1.0300 43 1 3.4547 4.8329 -0.5109 44 1 2.0416 3.7508 -0.5122 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000547280297.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:21 Heat of formation + Delta-G solvation = -118.029426 kcal Electronic energy + Delta-G solvation = -26790.882487 eV Core-core repulsion = 23027.540821 eV Total energy + Delta-G solvation = -3763.341665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.42020 -38.74302 -38.46890 -37.88878 -36.90358 -34.23811 -34.10967 -32.66815 -32.41996 -31.08369 -28.75138 -27.90502 -25.25416 -25.12967 -23.53420 -22.50638 -22.20180 -20.27629 -19.33083 -19.08933 -18.25579 -17.93048 -17.58591 -17.27911 -17.20121 -16.27063 -15.65500 -15.48796 -15.10154 -15.06158 -14.89945 -14.87470 -14.50572 -14.26498 -14.19374 -13.73985 -13.67692 -13.38352 -13.19999 -13.14054 -13.08479 -13.06743 -12.97087 -12.69647 -12.57390 -12.46098 -12.35787 -11.92690 -11.88612 -11.84552 -11.79507 -11.33706 -11.12631 -10.73561 -10.19178 -10.03853 -9.51775 -8.28164 -6.31280 -0.53174 -0.15328 0.16447 1.33030 1.37118 1.45065 2.02739 2.06274 2.31838 2.40355 2.81878 3.07442 3.33214 3.60442 3.68969 4.00481 4.04416 4.09465 4.18206 4.21578 4.29968 4.31078 4.40058 4.45959 4.56125 4.69197 4.73351 4.78962 4.80051 4.91137 4.96571 4.98594 5.04851 5.12887 5.19532 5.22454 5.26502 5.29324 5.39085 5.50879 5.59255 5.67021 6.21135 6.27813 6.33841 6.73867 7.32478 8.87445 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.011308 B = 0.005013 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2475.514590 B = 5583.636930 C = 6935.863663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.036 3.964 3 O -0.314 6.314 4 C 0.176 3.824 5 C -0.228 4.228 6 C 0.000 4.000 7 C -0.715 4.715 8 S 2.710 3.290 9 O -0.984 6.984 10 O -0.987 6.987 11 N -1.092 6.092 12 C 0.254 3.746 13 H 0.041 0.959 14 C -0.509 4.509 15 H 0.053 0.947 16 C 0.028 3.972 17 N -0.938 5.938 18 Si 0.920 3.080 19 H -0.264 1.264 20 H -0.298 1.298 21 H -0.243 1.243 22 C -0.152 4.152 23 C -0.134 4.134 24 C 0.006 3.994 25 C -0.150 4.150 26 C -0.102 4.102 27 H 0.068 0.932 28 H 0.101 0.899 29 H 0.062 0.938 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.161 0.839 33 H 0.145 0.855 34 H 0.420 0.580 35 H 0.266 0.734 36 H 0.046 0.954 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.155 0.845 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 -1.342 -13.198 16.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.038 4.038 3 O -0.226 6.226 4 C 0.129 3.871 5 C -0.248 4.248 6 C -0.019 4.019 7 C -0.804 4.804 8 S 2.801 3.199 9 O -0.974 6.974 10 O -0.978 6.978 11 N -0.852 5.852 12 C 0.147 3.853 13 H 0.058 0.942 14 C -0.548 4.548 15 H 0.072 0.928 16 C -0.171 4.171 17 N -0.578 5.578 18 Si 0.747 3.253 19 H -0.190 1.190 20 H -0.225 1.225 21 H -0.167 1.167 22 C -0.191 4.191 23 C -0.191 4.191 24 C -0.014 4.014 25 C -0.152 4.152 26 C -0.158 4.158 27 H 0.087 0.913 28 H 0.119 0.881 29 H 0.081 0.919 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.179 0.821 33 H 0.162 0.838 34 H 0.255 0.745 35 H 0.075 0.925 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.173 0.827 42 H 0.092 0.908 43 H 0.102 0.898 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.234 -1.356 -13.842 17.268 hybrid contribution -0.267 -0.831 1.017 1.340 sum -10.501 -2.187 -12.825 16.720 Atomic orbital electron populations 1.21798 0.90779 1.04354 1.03428 1.23240 0.97455 0.80435 1.02667 1.86083 1.17708 1.31768 1.87090 1.19176 0.83101 0.93859 0.90994 1.21578 0.93652 0.99670 1.09861 1.20902 0.96064 0.95502 0.89478 1.30680 1.26238 1.00552 1.22895 1.01044 0.73903 0.72570 0.72333 1.93518 1.76658 1.49718 1.77507 1.93508 1.85710 1.40999 1.77566 1.55177 1.77983 1.22279 1.29718 1.18733 0.93369 0.83109 0.90100 0.94155 1.21197 1.46345 0.94551 0.92749 0.92830 1.25527 0.94419 1.02545 0.94570 1.69993 1.49412 1.35611 1.02795 0.86292 0.78308 0.81265 0.79452 1.18961 1.22549 1.16710 1.22329 0.98004 0.98519 1.00265 1.21550 0.96778 0.99312 1.01468 1.20829 0.92212 0.98251 0.90073 1.19678 0.94313 0.94109 1.07093 1.20665 0.98156 0.93837 1.03146 0.91259 0.88090 0.91899 0.90335 0.91354 0.82120 0.83764 0.74462 0.92479 0.93575 0.91520 0.92672 0.92212 0.93119 0.82736 0.90822 0.89829 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 10.28 71.98 0.74 -1.01 16 2 C 0.04 0.60 5.46 71.98 0.39 0.99 16 3 O -0.31 -7.36 9.18 -92.44 -0.85 -8.21 16 4 C 0.18 4.86 6.66 22.50 0.15 5.01 16 5 C -0.23 -6.28 9.04 22.37 0.20 -6.07 16 6 C 0.00 0.00 8.89 22.25 0.20 0.20 16 7 C -0.71 -24.01 5.84 22.28 0.13 -23.88 16 8 S 2.71 96.56 5.64 -56.49 -0.32 96.24 16 9 O -0.98 -38.25 16.70 -128.00 -2.14 -40.38 16 10 O -0.99 -36.88 17.28 -128.00 -2.21 -39.09 16 11 N -1.09 -41.08 4.74 -172.53 -0.82 -41.90 16 12 C 0.25 10.99 2.06 44.24 0.09 11.08 16 13 H 0.04 1.75 6.30 -2.39 -0.02 1.73 16 14 C -0.51 -26.26 8.10 25.60 0.21 -26.06 16 15 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 16 C 0.03 1.54 5.45 84.66 0.46 2.00 16 17 N -0.94 -55.06 13.96 21.45 0.30 -54.76 16 18 Si 0.92 41.70 24.39 68.60 1.67 43.38 16 19 H -0.26 -11.50 6.85 99.48 0.68 -10.82 16 20 H -0.30 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.24 -10.12 6.53 99.48 0.65 -9.47 16 22 C -0.15 -6.22 5.39 30.59 0.16 -6.05 16 23 C -0.13 -5.02 9.51 71.98 0.68 -4.33 16 24 C 0.01 0.17 9.17 22.25 0.20 0.38 16 25 C -0.15 -4.24 5.89 -19.77 -0.12 -4.36 16 26 C -0.10 -2.21 9.79 71.24 0.70 -1.51 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.08 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.07 1.13 7.66 -2.39 -0.02 1.11 16 32 H 0.16 3.37 6.30 -2.91 -0.02 3.35 16 33 H 0.14 4.35 7.62 -2.91 -0.02 4.32 16 34 H 0.42 14.68 8.68 -96.75 -0.84 13.84 16 35 H 0.27 14.78 8.31 -92.71 -0.77 14.00 16 36 H 0.05 1.95 3.24 -2.39 -0.01 1.94 16 37 H 0.07 2.54 7.80 -2.38 -0.02 2.52 16 38 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 39 H 0.06 2.01 7.58 -2.39 -0.02 1.99 16 40 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 41 H 0.16 4.26 7.61 -2.91 -0.02 4.23 16 42 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 43 H 0.08 1.53 8.09 -2.39 -0.02 1.51 16 44 H 0.08 1.54 7.53 -2.39 -0.02 1.53 16 Total: -1.00 -67.52 364.19 -0.06 -67.58 By element: Atomic # 1 Polarization: 30.68 SS G_CDS: 0.09 Total: 30.77 kcal Atomic # 6 Polarization: -57.83 SS G_CDS: 4.21 Total: -53.63 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -0.52 Total: -96.66 kcal Atomic # 8 Polarization: -82.49 SS G_CDS: -5.20 Total: -87.69 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 1.67 Total: 43.38 kcal Atomic # 16 Polarization: 96.56 SS G_CDS: -0.32 Total: 96.24 kcal Total: -67.52 -0.06 -67.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000547280297.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.446 kcal (2) G-P(sol) polarization free energy of solvation -67.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds