Wall clock time and date at job start Tue Mar 31 2020 15:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36007 * 116.99558 * 2 1 4 4 C 1.38703 * 119.98245 * 0.28134 * 3 2 1 5 5 C 1.38109 * 120.01789 * 180.23011 * 4 3 2 6 6 C 1.38868 * 119.97842 * 359.49561 * 5 4 3 7 7 N 1.39941 * 120.01597 * 180.27551 * 6 5 4 8 8 C 1.46499 * 120.00112 * 334.99892 * 7 6 5 9 9 S 1.65600 * 119.99767 * 154.99700 * 7 6 5 10 10 O 1.42101 * 104.27697 * 206.07269 * 9 7 6 11 11 O 1.42104 * 104.27738 * 333.92567 * 9 7 6 12 12 C 1.81393 * 104.45033 * 89.99910 * 9 7 6 13 13 C 1.52998 * 109.47355 * 179.97438 * 12 9 7 14 14 C 1.53006 * 109.46850 * 300.00251 * 13 12 9 15 15 C 1.52999 * 109.47128 * 59.99542 * 13 12 9 16 16 C 1.50702 * 109.47455 * 180.02562 * 13 12 9 17 17 H 1.07998 * 119.99680 * 357.68756 * 16 13 12 18 18 C 1.37873 * 119.99709 * 177.69579 * 16 13 12 19 19 N 1.31512 * 120.00466 * 6.58060 * 18 16 13 20 20 Si 1.86801 * 119.99444 * 186.57698 * 18 16 13 21 21 H 1.48506 * 109.47303 * 84.99613 * 20 18 16 22 22 H 1.48501 * 109.47086 * 204.99321 * 20 18 16 23 23 H 1.48496 * 109.47350 * 324.99325 * 20 18 16 24 24 C 1.38856 * 119.96203 * 0.24735 * 6 5 4 25 25 C 1.38109 * 119.98290 * 0.02562 * 24 6 5 26 26 H 1.09001 * 109.47029 * 299.99548 * 1 2 3 27 27 H 1.08999 * 109.47312 * 59.99675 * 1 2 3 28 28 H 1.09004 * 109.46728 * 180.02562 * 1 2 3 29 29 H 1.07997 * 119.99075 * 359.97438 * 4 3 2 30 30 H 1.07992 * 120.01059 * 179.76705 * 5 4 3 31 31 H 1.08995 * 109.47589 * 89.99854 * 8 7 6 32 32 H 1.09003 * 109.47011 * 209.99939 * 8 7 6 33 33 H 1.09005 * 109.46667 * 329.99412 * 8 7 6 34 34 H 1.09000 * 109.46952 * 300.00048 * 12 9 7 35 35 H 1.08999 * 109.47066 * 59.99761 * 12 9 7 36 36 H 1.09000 * 109.47608 * 66.66642 * 14 13 12 37 37 H 1.08997 * 109.47203 * 186.66724 * 14 13 12 38 38 H 1.09001 * 109.46994 * 306.66518 * 14 13 12 39 39 H 1.09007 * 109.47004 * 60.00484 * 15 13 12 40 40 H 1.08999 * 109.47250 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.47494 * 300.00661 * 15 13 12 42 42 H 0.97001 * 119.99911 * 180.02562 * 19 18 16 43 43 H 1.08002 * 120.00570 * 180.02562 * 24 6 5 44 44 H 1.08001 * 119.99178 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2119 0.0000 4 6 1.2905 2.3748 0.0059 5 6 1.9166 3.6059 0.0011 6 6 3.3034 3.6790 0.0010 7 7 3.9386 4.9259 0.0019 8 6 3.2465 6.1010 -0.5332 9 16 5.4727 5.0731 0.6080 10 8 5.5563 6.4291 1.0246 11 8 5.5826 4.0107 1.5453 12 6 6.5533 4.7777 -0.8187 13 6 8.0156 4.8882 -0.3824 14 6 8.2772 6.2892 0.1742 15 6 8.3048 3.8470 0.7007 16 6 8.9134 4.6433 -1.5678 17 1 8.4849 4.3934 -2.5271 18 6 10.2817 4.7382 -1.4274 19 7 10.8099 4.9139 -0.2360 20 14 11.3852 4.6172 -2.9298 21 1 11.5008 5.9531 -3.5681 22 1 12.7323 4.1471 -2.5179 23 1 10.7998 3.6551 -3.8977 24 6 4.0593 2.5142 0.0004 25 6 3.4315 1.2840 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 0.2120 2.3177 0.0101 30 1 1.3280 4.5112 0.0019 31 1 2.6880 6.5889 0.2656 32 1 3.9776 6.7978 -0.9433 33 1 2.5591 5.7907 -1.3202 34 1 6.3665 3.7798 -1.2154 35 1 6.3476 5.5197 -1.5901 36 1 7.7164 6.4234 1.0991 37 1 9.3421 6.4075 0.3745 38 1 7.9597 7.0348 -0.5547 39 1 8.1183 2.8489 0.3043 40 1 9.3464 3.9260 1.0118 41 1 7.6554 4.0245 1.5580 42 1 11.7726 4.9810 -0.1373 43 1 5.1378 2.5703 0.0007 44 1 4.0193 0.3780 -0.0004 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565955589.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:35 Heat of formation + Delta-G solvation = -71.661129 kcal Electronic energy + Delta-G solvation = -26944.938564 eV Core-core repulsion = 23183.607579 eV Total energy + Delta-G solvation = -3761.330985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.24783 -38.28978 -36.77549 -36.35680 -35.48082 -35.10125 -31.72959 -31.19962 -29.54333 -27.38454 -26.88487 -26.00003 -25.77534 -25.26330 -22.63154 -21.95548 -19.52666 -18.92270 -18.24016 -17.58892 -16.72865 -16.16234 -15.90555 -15.78197 -15.50830 -15.18765 -14.76992 -14.44759 -14.20859 -13.78811 -13.47890 -13.25468 -13.07159 -12.86610 -12.73725 -12.57649 -12.56857 -12.19135 -12.07787 -11.68347 -11.46520 -11.36386 -11.22305 -11.06129 -11.01405 -10.83313 -10.69939 -10.43981 -10.36420 -10.15684 -9.96332 -9.71474 -9.48688 -9.03919 -8.78402 -8.41518 -7.65514 -6.07510 -4.19340 0.62570 1.28683 1.41931 2.86170 3.20345 3.24683 3.31866 3.33490 3.69943 4.25192 4.35530 4.48327 4.56952 4.73211 4.78491 4.94322 4.95158 5.17155 5.19152 5.25882 5.33288 5.37360 5.41379 5.52592 5.63957 5.67163 5.74445 5.87879 6.02993 6.24892 6.29921 6.44982 6.55493 6.62883 6.72609 6.84741 6.86094 6.98806 7.25756 7.34248 7.43060 7.64241 7.92791 8.05279 8.28822 8.79092 9.46185 10.93671 Molecular weight = 327.13amu Principal moments of inertia in cm(-1) A = 0.017657 B = 0.003664 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.415817 B = 7639.789303 C = 8458.896707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.095 3.905 4 C -0.181 4.181 5 C -0.115 4.115 6 C 0.146 3.854 7 N -0.951 5.951 8 C 0.085 3.915 9 S 2.580 3.420 10 O -0.953 6.953 11 O -0.947 6.947 12 C -0.579 4.579 13 C 0.083 3.917 14 C -0.162 4.162 15 C -0.165 4.165 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.066 3.934 19 N -0.882 5.882 20 Si 0.896 3.104 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.113 4.113 25 C -0.111 4.111 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.025 0.975 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.037 0.963 40 H 0.099 0.901 41 H 0.027 0.973 42 H 0.263 0.737 43 H 0.140 0.860 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.468 -3.842 -1.449 19.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.050 3.950 4 C -0.201 4.201 5 C -0.137 4.137 6 C 0.050 3.950 7 N -0.775 5.775 8 C -0.059 4.059 9 S 2.680 3.320 10 O -0.943 6.943 11 O -0.937 6.937 12 C -0.713 4.713 13 C 0.081 3.919 14 C -0.220 4.220 15 C -0.223 4.223 16 C -0.543 4.543 17 H 0.078 0.922 18 C -0.137 4.137 19 N -0.520 5.520 20 Si 0.723 3.277 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.135 4.135 25 C -0.130 4.130 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.082 0.918 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.139 0.861 35 H 0.139 0.861 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.117 0.883 41 H 0.045 0.955 42 H 0.074 0.926 43 H 0.158 0.842 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -19.020 -3.698 -0.432 19.381 hybrid contribution 0.356 0.069 -1.492 1.536 sum -18.664 -3.629 -1.924 19.111 Atomic orbital electron populations 1.23005 0.78855 1.03658 1.01156 1.86086 1.20965 1.26891 1.89319 1.18919 0.92253 0.84082 0.99751 1.21002 0.99743 0.91735 1.07579 1.20609 0.92345 0.97700 1.03054 1.17440 0.92316 0.84092 1.01169 1.55918 1.34019 1.12073 1.75505 1.21621 0.98779 0.86187 0.99340 1.06361 0.72912 0.74688 0.78016 1.93559 1.84859 1.35317 1.80575 1.93587 1.84448 1.56599 1.59099 1.30618 1.13263 1.10425 1.17036 1.17955 0.84565 0.93569 0.95847 1.22230 1.05377 0.96731 0.97644 1.22330 1.05181 0.98135 0.96661 1.20919 0.90509 1.48352 0.94541 0.92180 1.24932 0.97966 0.94780 0.95975 1.69806 1.11791 1.49065 1.21293 0.86550 0.79821 0.78398 0.82887 1.20525 1.21154 1.19943 1.21010 1.00640 0.90607 1.01207 1.20199 0.91223 0.98061 1.03484 0.92827 0.92841 0.88491 0.85300 0.85337 0.91839 0.90036 0.90525 0.86068 0.86122 0.95568 0.88585 0.94521 0.94342 0.88259 0.95464 0.92641 0.84245 0.84414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.68 10.50 -19.76 -0.21 -3.89 16 3 C 0.10 1.21 6.69 -39.24 -0.26 0.95 16 4 C -0.18 -2.04 9.03 -39.46 -0.36 -2.39 16 5 C -0.11 -1.40 9.13 -39.40 -0.36 -1.76 16 6 C 0.15 2.16 6.05 -83.69 -0.51 1.65 16 7 N -0.95 -14.40 3.33 -65.35 -0.22 -14.61 16 8 C 0.09 0.98 9.20 59.85 0.55 1.53 16 9 S 2.58 48.91 3.77 -107.50 -0.41 48.51 16 10 O -0.95 -19.93 14.85 -57.54 -0.85 -20.78 16 11 O -0.95 -19.95 12.79 -57.54 -0.74 -20.68 16 12 C -0.58 -11.24 4.98 37.16 0.19 -11.06 16 13 C 0.08 1.98 0.52 -155.66 -0.08 1.90 16 14 C -0.16 -3.93 7.58 37.16 0.28 -3.65 16 15 C -0.17 -4.01 7.80 37.16 0.29 -3.72 16 16 C -0.50 -13.04 8.01 -34.44 -0.28 -13.31 16 17 H 0.06 1.51 7.75 -52.49 -0.41 1.11 16 18 C 0.07 1.72 5.09 -17.82 -0.09 1.63 16 19 N -0.88 -23.77 9.39 55.43 0.52 -23.25 16 20 Si 0.90 20.40 29.54 -169.99 -5.02 15.38 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 C -0.11 -1.76 8.42 -39.40 -0.33 -2.09 16 25 C -0.11 -1.54 9.98 -39.46 -0.39 -1.94 16 26 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 27 H 0.05 0.32 7.67 -51.93 -0.40 -0.08 16 28 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.13 1.06 6.29 -52.49 -0.33 0.73 16 30 H 0.13 1.25 7.13 -52.49 -0.37 0.87 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.90 7.79 -51.93 -0.40 0.49 16 33 H 0.08 0.67 7.47 -51.93 -0.39 0.28 16 34 H 0.12 2.14 7.18 -51.92 -0.37 1.77 16 35 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 36 H 0.03 0.60 5.96 -51.93 -0.31 0.29 16 37 H 0.10 2.51 5.99 -51.93 -0.31 2.20 16 38 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.10 2.61 6.01 -51.93 -0.31 2.29 16 41 H 0.03 0.63 5.46 -51.93 -0.28 0.34 16 42 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 43 H 0.14 2.27 5.13 -52.49 -0.27 2.00 16 44 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 LS Contribution 352.32 15.07 5.31 5.31 Total: -1.00 -31.86 352.32 -8.20 -40.06 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -6.23 Total: 5.03 kcal Atomic # 6 Polarization: -30.70 SS G_CDS: -0.36 Total: -31.06 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: 0.30 Total: -37.87 kcal Atomic # 8 Polarization: -43.56 SS G_CDS: -1.80 Total: -45.36 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Atomic # 16 Polarization: 48.91 SS G_CDS: -0.41 Total: 48.51 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.86 -8.20 -40.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565955589.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.602 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds